Wall clock time and date at job start Mon Mar 30 2020 06:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.47146 * 2 1 4 4 C 1.38159 * 119.45482 * 270.04107 * 3 2 1 5 5 C 1.39607 * 121.44463 * 180.02562 * 4 3 2 6 6 S 1.76067 * 130.61789 * 179.97438 * 5 4 3 7 7 C 1.75506 * 91.51508 * 179.97438 * 6 5 4 8 8 C 1.50695 * 124.66469 * 179.97438 * 7 6 5 9 9 O 1.42904 * 109.47478 * 270.02430 * 8 7 6 10 10 C 1.32730 * 110.67319 * 359.97438 * 7 6 5 11 11 C 1.39764 * 120.07101 * 359.95522 * 5 4 3 12 12 C 1.47835 * 118.06878 * 0.02562 * 11 5 4 13 13 C 1.40572 * 120.40865 * 179.97438 * 12 11 5 14 14 H 1.08007 * 120.00030 * 24.79316 * 13 12 11 15 15 C 1.40001 * 120.00340 * 204.79573 * 13 12 11 16 16 N 1.30836 * 119.99918 * 17.80681 * 15 13 12 17 17 Si 1.86791 * 120.00281 * 197.80672 * 15 13 12 18 18 H 1.48506 * 109.47282 * 89.99708 * 17 15 13 19 19 H 1.48505 * 109.47425 * 209.99942 * 17 15 13 20 20 H 1.48505 * 109.47268 * 330.00214 * 17 15 13 21 21 C 1.37610 * 119.45957 * 90.00151 * 3 2 1 22 22 H 1.08999 * 109.46620 * 59.99874 * 1 2 3 23 23 H 1.08997 * 109.46809 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47202 * 300.00329 * 1 2 3 25 25 H 1.08996 * 109.47398 * 240.00016 * 2 1 3 26 26 H 1.09003 * 109.47163 * 119.99633 * 2 1 3 27 27 H 1.08000 * 119.27620 * 359.95435 * 4 3 2 28 28 H 1.09005 * 109.46885 * 30.02309 * 8 7 6 29 29 H 1.09003 * 109.47567 * 150.02013 * 8 7 6 30 30 H 0.96694 * 114.00290 * 180.02562 * 9 8 7 31 31 H 1.07999 * 122.09153 * 179.72690 * 10 7 6 32 32 H 0.96992 * 120.00009 * 180.02562 * 16 15 13 33 33 H 1.08010 * 119.92682 * 0.03857 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2580 2.0616 -1.2030 5 6 2.7235 3.3769 -1.2515 6 16 3.0897 4.4132 -2.6270 7 6 3.5564 5.7327 -1.5680 8 6 4.0340 7.0820 -2.0392 9 8 5.4551 7.0590 -2.1885 10 6 3.4310 5.3786 -0.2949 11 6 2.9713 4.0762 -0.0670 12 6 2.7263 3.3819 1.2150 13 6 2.9596 4.0386 2.4357 14 1 2.9253 5.1170 2.4840 15 6 3.2364 3.2948 3.5891 16 7 3.6209 2.0484 3.4871 17 14 3.0570 4.0819 5.2735 18 1 1.6736 3.8743 5.7722 19 1 4.0215 3.4598 6.2160 20 1 3.3332 5.5375 5.1718 21 6 2.2580 2.0589 1.1982 22 1 -0.3632 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 2.0712 1.5331 -2.1261 28 1 3.5717 7.3165 -2.9981 29 1 3.7579 7.8412 -1.3074 30 1 5.8326 7.8968 -2.4896 31 1 3.6735 6.0514 0.5143 32 1 3.8123 1.5330 4.2861 33 1 2.0752 1.5401 2.1277 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396289599.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:14 Heat of formation + Delta-G solvation = -33.241050 kcal Electronic energy + Delta-G solvation = -16870.955659 eV Core-core repulsion = 14179.779183 eV Total energy + Delta-G solvation = -2691.176475 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.23044 -36.70362 -34.85827 -34.27850 -31.72990 -29.78251 -28.49418 -26.04982 -24.71358 -22.47038 -21.88962 -20.07930 -18.84138 -17.42087 -17.12509 -16.10179 -15.22904 -14.82672 -14.60348 -13.92842 -13.61219 -13.48910 -13.00633 -12.62083 -12.50275 -12.30278 -11.78573 -11.63067 -11.51683 -11.31523 -11.07632 -10.80815 -10.64436 -10.43318 -10.32421 -9.72220 -9.67642 -9.60414 -9.46813 -9.33488 -8.22419 -7.20549 -7.01359 -6.72374 -4.51123 1.82920 2.64670 2.66351 2.92555 2.96065 3.06492 3.08752 3.52114 3.71215 4.34440 4.86076 5.38507 5.49644 5.58631 5.65047 5.69522 5.81476 6.03439 6.21166 6.33611 6.36921 6.46184 6.55756 6.62645 6.75759 6.82307 7.03385 7.06518 7.24068 7.32866 7.73499 7.76623 7.90212 7.90677 8.01839 8.36631 8.55626 8.71615 9.83155 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.014063 B = 0.008431 C = 0.005514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.510304 B = 3320.363640 C = 5076.890426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.079 4.079 3 C -0.024 4.024 4 C -0.229 4.229 5 C -0.059 4.059 6 S 0.006 5.994 7 C -0.260 4.260 8 C 0.164 3.836 9 O -0.568 6.568 10 C -0.028 4.028 11 C -0.199 4.199 12 C 0.156 3.844 13 C -0.427 4.427 14 H 0.086 0.914 15 C 0.073 3.927 16 N -0.763 5.763 17 Si 0.916 3.084 18 H -0.263 1.263 19 H -0.274 1.274 20 H -0.258 1.258 21 C -0.190 4.190 22 H 0.051 0.949 23 H 0.045 0.955 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.090 0.910 28 H 0.044 0.956 29 H 0.053 0.947 30 H 0.369 0.631 31 H 0.122 0.878 32 H 0.288 0.712 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.055 2.989 -2.943 4.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 C -0.027 4.027 4 C -0.255 4.255 5 C -0.174 4.174 6 S 0.268 5.732 7 C -0.375 4.375 8 C 0.086 3.914 9 O -0.373 6.373 10 C -0.058 4.058 11 C -0.205 4.205 12 C 0.151 3.849 13 C -0.454 4.454 14 H 0.104 0.896 15 C -0.149 4.149 16 N -0.386 5.386 17 Si 0.739 3.261 18 H -0.188 1.188 19 H -0.199 1.199 20 H -0.182 1.182 21 C -0.212 4.212 22 H 0.070 0.930 23 H 0.064 0.936 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.108 0.892 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.215 0.785 31 H 0.140 0.860 32 H 0.099 0.901 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.074 2.093 -4.171 5.107 hybrid contribution 0.201 0.995 2.016 2.257 sum -1.873 3.088 -2.155 4.206 Atomic orbital electron populations 1.21700 0.95790 1.00286 1.02020 1.20473 0.95318 0.94459 1.01445 1.19239 0.96416 0.93979 0.93074 1.19329 1.16573 0.93362 0.96211 1.22183 1.03264 0.97734 0.94231 1.83323 1.72496 1.07024 1.10403 1.22903 1.18966 0.99597 0.95996 1.20200 0.80566 0.92459 0.98221 1.86689 1.21347 1.38641 1.90628 1.19628 0.95847 0.95400 0.94972 1.19061 1.13659 0.94593 0.93196 1.18427 0.85914 0.91174 0.89362 1.19647 1.38305 0.95401 0.92052 0.89618 1.26099 0.92046 0.94666 1.02131 1.69840 1.27259 1.08901 1.32562 0.86168 0.79384 0.80679 0.79880 1.18818 1.19883 1.18195 1.20887 1.07830 0.96246 0.96196 0.92957 0.93561 0.92663 0.92382 0.91663 0.89168 0.93748 0.92863 0.78523 0.85985 0.90091 0.85923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.89 37.16 0.37 -1.89 16 2 C -0.08 -1.46 6.03 -27.88 -0.17 -1.63 16 3 C -0.02 -0.55 5.11 -104.88 -0.54 -1.08 16 4 C -0.23 -5.32 9.64 -39.10 -0.38 -5.70 16 5 C -0.06 -1.44 6.49 -38.50 -0.25 -1.69 16 6 S 0.01 0.12 23.27 -107.50 -2.50 -2.38 16 7 C -0.26 -5.48 6.07 -36.19 -0.22 -5.70 16 8 C 0.16 2.71 7.50 36.00 0.27 2.98 16 9 O -0.57 -9.34 13.64 -35.23 -0.48 -9.82 16 10 C -0.03 -0.66 9.60 -40.81 -0.39 -1.05 16 11 C -0.20 -5.05 6.02 -104.75 -0.63 -5.68 16 12 C 0.16 4.08 5.76 -104.30 -0.60 3.48 16 13 C -0.43 -10.69 8.82 -38.04 -0.34 -11.03 16 14 H 0.09 2.06 7.52 -52.48 -0.39 1.66 16 15 C 0.07 1.70 5.13 -17.32 -0.09 1.61 16 16 N -0.76 -18.34 10.97 55.55 0.61 -17.73 16 17 Si 0.92 17.32 29.60 -169.99 -5.03 12.29 16 18 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 19 H -0.27 -5.07 7.11 56.52 0.40 -4.66 16 20 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 21 C -0.19 -4.74 8.28 -39.02 -0.32 -5.07 16 22 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.06 0.99 8.07 -51.93 -0.42 0.57 16 26 H 0.06 1.18 8.07 -51.93 -0.42 0.77 16 27 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.37 3.77 9.12 45.56 0.42 4.18 16 31 H 0.12 2.65 7.72 -52.49 -0.41 2.25 16 32 H 0.29 6.20 8.30 -40.82 -0.34 5.86 16 33 H 0.12 3.09 6.16 -52.48 -0.32 2.76 16 LS Contribution 296.87 15.07 4.47 4.47 Total: -1.00 -28.59 296.87 -9.43 -38.02 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -3.22 Total: 7.59 kcal Atomic # 6 Polarization: -29.16 SS G_CDS: -3.28 Total: -32.44 kcal Atomic # 7 Polarization: -18.34 SS G_CDS: 0.61 Total: -17.73 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: -0.48 Total: -9.82 kcal Atomic # 14 Polarization: 17.32 SS G_CDS: -5.03 Total: 12.29 kcal Atomic # 16 Polarization: 0.12 SS G_CDS: -2.50 Total: -2.38 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.59 -9.43 -38.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396289599.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.778 kcal (2) G-P(sol) polarization free energy of solvation -28.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds