Wall clock time and date at job start Mon Mar 30 2020 06:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.47146 * 2 1 4 4 C 1.38159 * 119.45482 * 270.04107 * 3 2 1 5 5 C 1.39607 * 121.44463 * 180.02562 * 4 3 2 6 6 S 1.76067 * 130.61789 * 179.97438 * 5 4 3 7 7 C 1.75506 * 91.51508 * 179.97438 * 6 5 4 8 8 C 1.50695 * 124.66469 * 179.97438 * 7 6 5 9 9 O 1.42904 * 109.47478 * 270.02430 * 8 7 6 10 10 C 1.32730 * 110.67319 * 359.97438 * 7 6 5 11 11 C 1.39764 * 120.07101 * 359.95522 * 5 4 3 12 12 C 1.47835 * 118.06878 * 0.02562 * 11 5 4 13 13 C 1.40572 * 120.40865 * 179.97438 * 12 11 5 14 14 H 1.08007 * 120.00030 * 24.79316 * 13 12 11 15 15 C 1.40001 * 120.00340 * 204.79573 * 13 12 11 16 16 N 1.30836 * 119.99918 * 17.80681 * 15 13 12 17 17 Si 1.86791 * 120.00281 * 197.80672 * 15 13 12 18 18 H 1.48506 * 109.47282 * 89.99708 * 17 15 13 19 19 H 1.48505 * 109.47425 * 209.99942 * 17 15 13 20 20 H 1.48505 * 109.47268 * 330.00214 * 17 15 13 21 21 C 1.37610 * 119.45957 * 90.00151 * 3 2 1 22 22 H 1.08999 * 109.46620 * 59.99874 * 1 2 3 23 23 H 1.08997 * 109.46809 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47202 * 300.00329 * 1 2 3 25 25 H 1.08996 * 109.47398 * 240.00016 * 2 1 3 26 26 H 1.09003 * 109.47163 * 119.99633 * 2 1 3 27 27 H 1.08000 * 119.27620 * 359.95435 * 4 3 2 28 28 H 1.09005 * 109.46885 * 30.02309 * 8 7 6 29 29 H 1.09003 * 109.47567 * 150.02013 * 8 7 6 30 30 H 0.96694 * 114.00290 * 180.02562 * 9 8 7 31 31 H 1.07999 * 122.09153 * 179.72690 * 10 7 6 32 32 H 0.96992 * 120.00009 * 180.02562 * 16 15 13 33 33 H 1.08010 * 119.92682 * 0.03857 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2580 2.0616 -1.2030 5 6 2.7235 3.3769 -1.2515 6 16 3.0897 4.4132 -2.6270 7 6 3.5564 5.7327 -1.5680 8 6 4.0340 7.0820 -2.0392 9 8 5.4551 7.0590 -2.1885 10 6 3.4310 5.3786 -0.2949 11 6 2.9713 4.0762 -0.0670 12 6 2.7263 3.3819 1.2150 13 6 2.9596 4.0386 2.4357 14 1 2.9253 5.1170 2.4840 15 6 3.2364 3.2948 3.5891 16 7 3.6209 2.0484 3.4871 17 14 3.0570 4.0819 5.2735 18 1 1.6736 3.8743 5.7722 19 1 4.0215 3.4598 6.2160 20 1 3.3332 5.5375 5.1718 21 6 2.2580 2.0589 1.1982 22 1 -0.3632 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 2.0712 1.5331 -2.1261 28 1 3.5717 7.3165 -2.9981 29 1 3.7579 7.8412 -1.3074 30 1 5.8326 7.8968 -2.4896 31 1 3.6735 6.0514 0.5143 32 1 3.8123 1.5330 4.2861 33 1 2.0752 1.5401 2.1277 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396289599.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:14 Heat of formation + Delta-G solvation = -49.841054 kcal Electronic energy + Delta-G solvation = -16871.675489 eV Core-core repulsion = 14179.779183 eV Total energy + Delta-G solvation = -2691.896305 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.99051 -38.07460 -36.44759 -36.03344 -33.30144 -31.59587 -30.04072 -27.76135 -26.32783 -24.09286 -23.56274 -21.77154 -20.57888 -19.19021 -18.36951 -17.81980 -16.87616 -16.43135 -16.29874 -15.52194 -15.05589 -14.95831 -14.56652 -14.24613 -14.12888 -13.91871 -13.40575 -13.27977 -13.08432 -12.87778 -12.65738 -12.39224 -12.16988 -12.01395 -11.80877 -11.43127 -11.31344 -11.24948 -11.06659 -10.92749 -10.04034 -8.97222 -8.77812 -8.48913 -6.37423 0.08060 0.88833 0.92894 1.30902 1.36342 1.48723 1.50276 1.74993 2.13266 2.57203 3.51366 3.66875 4.11820 4.16895 4.28062 4.30743 4.44169 4.55845 4.61583 4.79892 4.84690 4.87450 5.00306 5.04061 5.07364 5.26283 5.31401 5.41742 5.46459 5.54601 5.92269 5.94372 6.10666 6.18643 6.53808 6.71882 6.88097 6.97077 8.12432 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.014063 B = 0.008431 C = 0.005514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.510304 B = 3320.363640 C = 5076.890426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.077 4.077 3 C -0.027 4.027 4 C -0.240 4.240 5 C -0.092 4.092 6 S 0.042 5.958 7 C -0.247 4.247 8 C 0.164 3.836 9 O -0.590 6.590 10 C -0.061 4.061 11 C -0.224 4.224 12 C 0.125 3.875 13 C -0.459 4.459 14 H 0.084 0.916 15 C 0.036 3.964 16 N -0.794 5.794 17 Si 0.988 3.012 18 H -0.257 1.257 19 H -0.263 1.263 20 H -0.256 1.256 21 C -0.216 4.216 22 H 0.052 0.948 23 H 0.078 0.922 24 H 0.042 0.958 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.108 0.892 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.398 0.602 31 H 0.126 0.874 32 H 0.297 0.703 33 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.158 3.733 -3.577 5.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.115 4.115 3 C -0.030 4.030 4 C -0.266 4.266 5 C -0.207 4.207 6 S 0.305 5.695 7 C -0.362 4.362 8 C 0.085 3.915 9 O -0.399 6.399 10 C -0.091 4.091 11 C -0.230 4.230 12 C 0.120 3.880 13 C -0.486 4.486 14 H 0.102 0.898 15 C -0.183 4.183 16 N -0.417 5.417 17 Si 0.807 3.193 18 H -0.182 1.182 19 H -0.188 1.188 20 H -0.180 1.180 21 C -0.237 4.237 22 H 0.071 0.929 23 H 0.097 0.903 24 H 0.061 0.939 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.126 0.874 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.248 0.752 31 H 0.144 0.856 32 H 0.108 0.892 33 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.169 2.844 -4.836 6.016 hybrid contribution 0.295 0.826 2.029 2.210 sum -1.875 3.670 -2.808 4.987 Atomic orbital electron populations 1.21640 0.93762 1.02240 1.01424 1.20525 0.97001 0.91788 1.02183 1.19673 0.95146 0.95908 0.92254 1.19637 1.16459 0.93420 0.97053 1.22609 1.03822 0.98719 0.95512 1.83067 1.71644 1.06072 1.08767 1.23636 1.15978 1.01208 0.95340 1.20319 0.81003 0.90035 1.00134 1.86586 1.21034 1.41288 1.91040 1.19730 0.98015 0.95115 0.96205 1.19443 1.14166 0.95882 0.93526 1.18845 0.86731 0.92117 0.90350 1.19850 1.40137 0.95544 0.93028 0.89836 1.26940 0.90951 0.95016 1.05407 1.69871 1.27619 1.10159 1.34082 0.85102 0.79639 0.79614 0.74902 1.18159 1.18759 1.17976 1.20891 1.09679 0.96516 0.96650 0.92923 0.90294 0.93888 0.90649 0.91821 0.87377 0.91128 0.90510 0.75163 0.85649 0.89178 0.87045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.12 9.89 71.98 0.71 -3.41 16 2 C -0.08 -2.82 6.03 29.85 0.18 -2.64 16 3 C -0.03 -1.25 5.11 -20.03 -0.10 -1.35 16 4 C -0.24 -11.25 9.64 22.58 0.22 -11.03 16 5 C -0.09 -4.50 6.49 22.97 0.15 -4.35 16 6 S 0.04 1.74 23.27 -56.49 -1.31 0.43 16 7 C -0.25 -10.07 6.07 24.51 0.15 -9.92 16 8 C 0.16 4.91 7.50 71.23 0.53 5.45 16 9 O -0.59 -17.66 13.64 -148.98 -2.03 -19.69 16 10 C -0.06 -2.84 9.60 21.52 0.21 -2.63 16 11 C -0.22 -11.71 6.02 -19.95 -0.12 -11.83 16 12 C 0.12 6.80 5.76 -19.65 -0.11 6.69 16 13 C -0.46 -23.98 8.82 23.27 0.21 -23.77 16 14 H 0.08 4.20 7.52 -2.91 -0.02 4.18 16 15 C 0.04 1.73 5.13 85.27 0.44 2.17 16 16 N -0.79 -39.35 10.97 21.84 0.24 -39.11 16 17 Si 0.99 35.81 29.60 68.60 2.03 37.84 16 18 H -0.26 -8.99 7.11 99.48 0.71 -8.29 16 19 H -0.26 -9.00 7.11 99.48 0.71 -8.30 16 20 H -0.26 -9.09 7.11 99.48 0.71 -8.39 16 21 C -0.22 -11.25 8.28 22.64 0.19 -11.06 16 22 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.07 2.46 8.07 -2.39 -0.02 2.44 16 26 H 0.06 2.31 8.07 -2.39 -0.02 2.29 16 27 H 0.11 4.53 8.06 -2.91 -0.02 4.51 16 28 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.40 6.72 9.12 -74.06 -0.68 6.05 16 31 H 0.13 5.58 7.72 -2.91 -0.02 5.56 16 32 H 0.30 13.05 8.30 -92.71 -0.77 12.28 16 33 H 0.11 5.92 6.16 -2.91 -0.02 5.90 16 Total: -1.00 -63.43 296.87 2.02 -61.41 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: 0.46 Total: 26.82 kcal Atomic # 6 Polarization: -70.33 SS G_CDS: 2.64 Total: -67.69 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.24 Total: -39.11 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -2.03 Total: -19.69 kcal Atomic # 14 Polarization: 35.81 SS G_CDS: 2.03 Total: 37.84 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -1.31 Total: 0.43 kcal Total: -63.43 2.02 -61.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396289599.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.569 kcal (2) G-P(sol) polarization free energy of solvation -63.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds