Wall clock time and date at job start Mon Mar 30 2020 06:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.46644 * 2 1 4 4 C 1.35954 * 119.76492 * 264.97495 * 3 2 1 5 5 C 1.38931 * 120.65619 * 180.02562 * 4 3 2 6 6 C 1.50702 * 119.88117 * 180.02562 * 5 4 3 7 7 O 1.42897 * 109.47072 * 90.00536 * 6 5 4 8 8 C 1.37701 * 120.23449 * 0.03010 * 5 4 3 9 9 C 1.39603 * 120.28150 * 359.97438 * 8 5 4 10 10 S 1.75987 * 130.26787 * 180.34964 * 9 8 5 11 11 C 1.75450 * 91.78671 * 180.02562 * 10 9 8 12 12 C 1.39931 * 124.82340 * 179.91184 * 11 10 9 13 13 H 1.07994 * 119.99969 * 193.48529 * 12 11 10 14 14 C 1.40185 * 119.99850 * 13.49199 * 12 11 10 15 15 N 1.30755 * 120.00255 * 200.22839 * 14 12 11 16 16 Si 1.86804 * 119.99769 * 20.23126 * 14 12 11 17 17 H 1.48496 * 109.47063 * 269.99866 * 16 14 12 18 18 H 1.48499 * 109.47390 * 29.99947 * 16 14 12 19 19 H 1.48502 * 109.46714 * 149.99996 * 16 14 12 20 20 C 1.36936 * 110.35571 * 359.65147 * 11 10 9 21 21 C 1.39806 * 115.02439 * 0.26440 * 20 11 10 22 22 H 1.09001 * 109.47160 * 60.00087 * 1 2 3 23 23 H 1.09004 * 109.47083 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47442 * 299.99763 * 1 2 3 25 25 H 1.08999 * 109.46887 * 240.00730 * 2 1 3 26 26 H 1.08993 * 109.47359 * 120.00110 * 2 1 3 27 27 H 1.08002 * 119.67020 * 359.97438 * 4 3 2 28 28 H 1.09001 * 109.47176 * 210.00184 * 6 5 4 29 29 H 1.09006 * 109.47041 * 330.00305 * 6 5 4 30 30 H 0.96694 * 114.00168 * 180.02562 * 7 6 5 31 31 H 1.07999 * 119.85992 * 179.97438 * 8 5 4 32 32 H 0.97004 * 119.99278 * 354.73362 * 15 14 12 33 33 H 1.08004 * 122.49337 * 180.24573 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3546 2.0228 -1.1756 5 6 2.8199 3.3317 -1.1971 6 6 3.1716 3.9820 -2.5103 7 8 2.0175 4.6355 -3.0424 8 6 2.9608 4.0368 -0.0228 9 6 2.6370 3.4426 1.1983 10 16 2.7066 4.0912 2.8328 11 6 2.1177 2.5855 3.5142 12 6 1.9087 2.3534 4.8782 13 1 1.7559 1.3465 5.2374 14 6 1.8974 3.4280 5.7784 15 7 2.0997 3.2157 7.0526 16 14 1.5933 5.1634 5.1574 17 1 2.8890 5.7965 4.8031 18 1 0.7219 5.1136 3.9560 19 1 0.9273 5.9595 6.2194 20 6 1.8864 1.6715 2.5211 21 6 2.1660 2.1208 1.2271 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 2.2488 1.4777 -2.1020 28 1 3.9633 4.7144 -2.3525 29 1 3.5145 3.2216 -3.2120 30 1 2.1706 5.0765 -3.8892 31 1 3.3234 5.0538 -0.0465 32 1 2.1814 2.3084 7.3861 33 1 1.5157 0.6772 2.7225 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396289655.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:36 Heat of formation + Delta-G solvation = -66.462066 kcal Electronic energy + Delta-G solvation = -16924.764942 eV Core-core repulsion = 14232.147895 eV Total energy + Delta-G solvation = -2692.617047 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.54727 -37.85271 -36.75542 -35.07096 -34.88772 -31.56675 -30.25560 -28.32922 -25.43816 -24.55073 -23.71140 -21.54337 -20.72419 -20.46748 -18.25389 -17.86350 -17.01639 -16.81032 -15.91269 -15.75489 -15.29442 -14.90034 -14.76307 -14.53189 -14.33770 -13.89719 -13.85477 -13.45651 -13.06834 -12.91321 -12.74868 -12.50415 -12.28242 -12.07668 -11.82882 -11.61671 -11.47781 -11.24821 -10.89651 -10.74462 -10.11659 -9.75301 -9.30631 -8.41880 -6.66863 0.07931 0.56830 0.71601 1.13520 1.26176 1.43336 1.70215 1.83056 2.04773 2.67059 3.04281 3.76024 3.91163 4.12433 4.27378 4.35195 4.38919 4.45551 4.57543 4.63038 4.74965 4.84422 4.98612 5.02529 5.07919 5.13086 5.28204 5.31850 5.41541 5.46524 5.54828 5.73478 5.81486 5.94122 6.13112 6.32523 6.41914 7.04065 7.63352 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.022933 B = 0.007088 C = 0.005744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.658397 B = 3949.493326 C = 4873.481438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.070 4.070 3 C -0.122 4.122 4 C -0.081 4.081 5 C -0.156 4.156 6 C 0.135 3.865 7 O -0.591 6.591 8 C -0.051 4.051 9 C -0.233 4.233 10 S -0.029 6.029 11 C 0.043 3.957 12 C -0.475 4.475 13 H 0.076 0.924 14 C 0.026 3.974 15 N -0.793 5.793 16 Si 0.994 3.006 17 H -0.223 1.223 18 H -0.230 1.230 19 H -0.220 1.220 20 C -0.369 4.369 21 C 0.011 3.989 22 H 0.058 0.942 23 H 0.074 0.926 24 H 0.030 0.970 25 H 0.089 0.911 26 H 0.053 0.947 27 H 0.141 0.859 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.396 0.604 31 H 0.122 0.878 32 H 0.291 0.709 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.965 1.273 -14.348 14.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.108 4.108 3 C -0.124 4.124 4 C -0.101 4.101 5 C -0.159 4.159 6 C 0.058 3.942 7 O -0.400 6.400 8 C -0.074 4.074 9 C -0.346 4.346 10 S 0.228 5.772 11 C -0.074 4.074 12 C -0.509 4.509 13 H 0.094 0.906 14 C -0.196 4.196 15 N -0.413 5.413 16 Si 0.810 3.190 17 H -0.147 1.147 18 H -0.153 1.153 19 H -0.143 1.143 20 C -0.393 4.393 21 C 0.004 3.996 22 H 0.077 0.923 23 H 0.093 0.907 24 H 0.050 0.950 25 H 0.108 0.892 26 H 0.071 0.929 27 H 0.159 0.841 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.246 0.754 31 H 0.140 0.860 32 H 0.103 0.897 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.043 3.850 -12.582 13.199 hybrid contribution -0.011 -3.113 -0.565 3.164 sum 1.032 0.737 -13.147 13.208 Atomic orbital electron populations 1.21672 0.94761 1.01979 1.01163 1.20380 0.96293 0.91741 1.02341 1.19718 1.04223 0.97300 0.91155 1.20481 0.97910 0.94610 0.97096 1.19512 1.07242 0.95140 0.93980 1.20823 0.87024 0.95537 0.90781 1.86569 1.36971 1.73763 1.42731 1.20369 0.98608 0.98639 0.89745 1.22687 1.16044 0.98913 0.96965 1.83676 1.74450 1.18666 1.00384 1.21382 0.95553 0.93796 0.96664 1.20252 1.42120 0.97089 0.91415 0.90579 1.28270 0.89437 1.08621 0.93276 1.70549 1.27858 1.27149 1.15762 0.84098 0.83328 0.71540 0.80049 1.14745 1.15323 1.14307 1.19718 1.26894 1.02153 0.90580 1.18153 0.95321 0.92287 0.93831 0.92322 0.90745 0.95043 0.89215 0.92856 0.84149 0.91987 0.90827 0.75448 0.86027 0.89687 0.87558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.15 9.89 71.98 0.71 -3.44 16 2 C -0.07 -2.26 5.78 29.85 0.17 -2.09 16 3 C -0.12 -4.75 5.17 -19.49 -0.10 -4.85 16 4 C -0.08 -2.75 9.20 21.90 0.20 -2.55 16 5 C -0.16 -5.31 5.51 -19.82 -0.11 -5.42 16 6 C 0.14 3.26 7.16 71.24 0.51 3.77 16 7 O -0.59 -14.53 13.64 -148.98 -2.03 -16.56 16 8 C -0.05 -2.01 9.71 22.47 0.22 -1.79 16 9 C -0.23 -10.78 6.47 23.12 0.15 -10.63 16 10 S -0.03 -1.37 16.94 -56.49 -0.96 -2.33 16 11 C 0.04 2.29 5.71 22.37 0.13 2.42 16 12 C -0.47 -25.66 9.61 23.15 0.22 -25.44 16 13 H 0.08 4.26 8.06 -2.91 -0.02 4.23 16 14 C 0.03 1.32 5.50 85.33 0.47 1.79 16 15 N -0.79 -40.48 13.65 21.87 0.30 -40.18 16 16 Si 0.99 42.43 24.75 68.60 1.70 44.13 16 17 H -0.22 -8.99 6.84 99.48 0.68 -8.31 16 18 H -0.23 -9.94 6.54 99.48 0.65 -9.29 16 19 H -0.22 -8.46 7.11 99.48 0.71 -7.75 16 20 C -0.37 -18.85 9.57 22.34 0.21 -18.63 16 21 C 0.01 0.53 5.82 -21.48 -0.13 0.40 16 22 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 23 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 24 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.09 2.30 8.02 -2.39 -0.02 2.28 16 26 H 0.05 1.85 7.38 -2.39 -0.02 1.83 16 27 H 0.14 3.76 8.03 -2.91 -0.02 3.73 16 28 H 0.06 1.29 8.08 -2.39 -0.02 1.27 16 29 H 0.07 1.38 8.09 -2.38 -0.02 1.36 16 30 H 0.40 5.00 9.12 -74.06 -0.68 4.33 16 31 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16 32 H 0.29 14.50 8.73 -92.71 -0.81 13.69 16 33 H 0.11 5.36 7.49 -2.91 -0.02 5.34 16 Total: -1.00 -61.95 290.07 2.00 -59.95 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: 0.33 Total: 21.45 kcal Atomic # 6 Polarization: -69.12 SS G_CDS: 2.66 Total: -66.46 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.30 Total: -40.18 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -2.03 Total: -16.56 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 1.70 Total: 44.13 kcal Atomic # 16 Polarization: -1.37 SS G_CDS: -0.96 Total: -2.33 kcal Total: -61.95 2.00 -59.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396289655.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.508 kcal (2) G-P(sol) polarization free energy of solvation -61.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds