Wall clock time and date at job start Mon Mar 30 2020 06:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50694 * 109.47591 * 2 1 4 4 C 1.37659 * 119.92866 * 265.00076 * 3 2 1 5 5 C 1.38110 * 121.08582 * 180.02562 * 4 3 2 6 6 C 1.39642 * 121.44756 * 0.02562 * 5 4 3 7 7 S 1.76070 * 130.61739 * 179.97438 * 6 5 4 8 8 C 1.75508 * 91.51393 * 180.02562 * 7 6 5 9 9 C 1.50702 * 124.66534 * 180.02562 * 8 7 6 10 10 O 1.42894 * 109.46738 * 269.99549 * 9 8 7 11 11 C 1.32720 * 110.67041 * 359.97438 * 8 7 6 12 12 C 1.39739 * 120.07087 * 359.97438 * 6 5 4 13 13 C 1.40322 * 119.93025 * 84.72329 * 3 2 1 14 14 C 1.40569 * 120.40571 * 0.02562 * 13 3 2 15 15 H 1.07996 * 120.00290 * 39.72260 * 14 13 3 16 16 C 1.40003 * 120.00169 * 219.72244 * 14 13 3 17 17 N 1.30835 * 120.00060 * 19.44227 * 16 14 13 18 18 Si 1.86792 * 120.00284 * 199.44177 * 16 14 13 19 19 H 1.48507 * 109.47223 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47210 * 119.99798 * 18 16 14 21 21 H 1.48507 * 109.47260 * 239.99898 * 18 16 14 22 22 H 1.08999 * 109.46375 * 60.00163 * 1 2 3 23 23 H 1.08997 * 109.47564 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46906 * 300.00794 * 1 2 3 25 25 H 1.09008 * 109.46644 * 120.00351 * 2 1 3 26 26 H 1.09000 * 109.46906 * 239.99206 * 2 1 3 27 27 H 1.07998 * 119.45458 * 0.02562 * 4 3 2 28 28 H 1.08004 * 119.27778 * 180.02562 * 5 4 3 29 29 H 1.09001 * 109.46738 * 29.99452 * 9 8 7 30 30 H 1.08995 * 109.47084 * 149.99596 * 9 8 7 31 31 H 0.96704 * 113.99978 * 179.97438 * 10 9 8 32 32 H 1.07996 * 122.10022 * 180.02562 * 11 8 7 33 33 H 0.96991 * 120.00377 * 183.32191 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 6 2.3595 2.0336 -1.1885 5 6 2.8226 3.3344 -1.2162 6 6 2.9779 4.0776 -0.0442 7 16 3.5404 5.7280 0.2004 8 6 3.3322 5.5909 1.9377 9 6 3.6300 6.6890 2.9259 10 8 4.9894 6.5881 3.3546 11 6 2.8753 4.3876 2.2613 12 6 2.6621 3.5089 1.1925 13 6 2.1605 2.1181 1.2109 14 6 1.8231 1.4995 2.4273 15 1 2.0773 0.4633 2.5949 16 6 1.1575 2.2265 3.4215 17 7 0.5176 3.3247 3.1112 18 14 1.1832 1.6288 5.1910 19 1 1.9702 0.3725 5.2778 20 1 1.8071 2.6637 6.0541 21 1 -0.2069 1.3754 5.6481 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5140 0.8899 25 1 1.8933 -0.5139 0.8900 26 1 1.8933 -0.5140 -0.8899 27 1 2.2520 1.4881 -2.1144 28 1 3.0702 3.7868 -2.1652 29 1 3.4693 7.6575 2.4523 30 1 2.9692 6.5916 3.7873 31 1 5.2518 7.2653 3.9931 32 1 2.6802 4.1040 3.2849 33 1 0.0972 3.8541 3.8067 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396291199.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:08 Heat of formation + Delta-G solvation = -42.166968 kcal Electronic energy + Delta-G solvation = -17368.821837 eV Core-core repulsion = 14677.258305 eV Total energy + Delta-G solvation = -2691.563532 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.04869 -38.06794 -36.31818 -35.61874 -33.65738 -31.28601 -30.13553 -27.68703 -26.15266 -24.55728 -22.60689 -22.38188 -20.16020 -19.28885 -18.39887 -17.68924 -17.04020 -16.37593 -16.21019 -15.55065 -15.05216 -14.89999 -14.48504 -14.25038 -14.04936 -13.87982 -13.33464 -13.17856 -13.04940 -12.83800 -12.57771 -12.41919 -12.21188 -11.86683 -11.84181 -11.59903 -11.31706 -10.98695 -10.95998 -10.78754 -9.87700 -8.88311 -8.80994 -8.22673 -6.32069 0.11588 0.85799 0.95315 1.32211 1.37743 1.43439 1.50083 1.85662 2.17747 2.69220 3.48275 3.61504 4.10764 4.25386 4.30385 4.39374 4.52268 4.55343 4.63468 4.83892 4.90531 4.93613 5.08871 5.16806 5.25330 5.29914 5.38614 5.51718 5.54893 5.66354 5.94631 5.97917 6.07679 6.29910 6.48455 6.84591 6.92023 6.93538 8.27630 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.015172 B = 0.010524 C = 0.006631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.081497 B = 2660.064853 C = 4221.424704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.048 4.048 3 C -0.219 4.219 4 C -0.054 4.054 5 C -0.227 4.227 6 C -0.111 4.111 7 S 0.039 5.961 8 C -0.253 4.253 9 C 0.165 3.835 10 O -0.586 6.586 11 C -0.028 4.028 12 C -0.168 4.168 13 C 0.147 3.853 14 C -0.476 4.476 15 H 0.088 0.912 16 C 0.051 3.949 17 N -0.804 5.804 18 Si 0.958 3.042 19 H -0.256 1.256 20 H -0.266 1.266 21 H -0.266 1.266 22 H 0.044 0.956 23 H 0.066 0.934 24 H 0.032 0.968 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.130 0.870 28 H 0.113 0.887 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.397 0.603 32 H 0.114 0.886 33 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.555 2.075 0.752 2.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.086 4.086 3 C -0.223 4.223 4 C -0.075 4.075 5 C -0.252 4.252 6 C -0.226 4.226 7 S 0.301 5.699 8 C -0.368 4.368 9 C 0.086 3.914 10 O -0.395 6.395 11 C -0.058 4.058 12 C -0.175 4.175 13 C 0.142 3.858 14 C -0.505 4.505 15 H 0.106 0.894 16 C -0.167 4.167 17 N -0.428 5.428 18 Si 0.779 3.221 19 H -0.179 1.179 20 H -0.191 1.191 21 H -0.191 1.191 22 H 0.063 0.937 23 H 0.085 0.915 24 H 0.051 0.949 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.148 0.852 28 H 0.131 0.869 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.248 0.752 32 H 0.132 0.868 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.858 2.965 -0.439 3.527 hybrid contribution -0.671 -0.565 2.022 2.204 sum 1.187 2.401 1.583 3.111 Atomic orbital electron populations 1.21566 0.95707 1.00874 1.00606 1.20076 0.95559 0.91936 1.00989 1.20005 1.11199 0.98929 0.92168 1.20654 0.95871 0.93597 0.97380 1.19910 1.14577 0.96035 0.94645 1.22731 1.04842 0.97000 0.98044 1.82994 1.72483 1.11887 1.02581 1.23705 1.15777 1.00641 0.96629 1.20253 0.83259 0.93920 0.93938 1.86572 1.28111 1.58806 1.66057 1.19712 0.95088 0.91750 0.99216 1.19425 1.08822 0.98090 0.91151 1.18625 0.85516 0.88330 0.93288 1.19547 1.32788 0.99147 0.98992 0.89378 1.26505 0.92107 0.94090 1.04009 1.69914 1.22217 1.13734 1.36920 0.85513 0.79187 0.79965 0.77438 1.17918 1.19090 1.19050 0.93680 0.91471 0.94892 0.92710 0.91209 0.85220 0.86898 0.91212 0.91633 0.75236 0.86812 0.89993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.70 9.90 71.98 0.71 -3.99 16 2 C -0.05 -1.85 5.57 29.85 0.17 -1.68 16 3 C -0.22 -10.10 5.18 -19.50 -0.10 -10.20 16 4 C -0.05 -2.33 9.58 22.10 0.21 -2.12 16 5 C -0.23 -10.20 10.02 22.58 0.23 -9.97 16 6 C -0.11 -5.44 6.49 22.97 0.15 -5.29 16 7 S 0.04 1.64 23.27 -56.49 -1.31 0.33 16 8 C -0.25 -11.08 6.07 24.51 0.15 -10.93 16 9 C 0.17 5.55 7.50 71.24 0.53 6.08 16 10 O -0.59 -18.70 13.64 -148.98 -2.03 -20.73 16 11 C -0.03 -1.38 8.11 21.52 0.17 -1.21 16 12 C -0.17 -8.81 5.51 -19.94 -0.11 -8.92 16 13 C 0.15 7.62 5.49 -19.65 -0.11 7.51 16 14 C -0.48 -23.94 7.84 23.27 0.18 -23.75 16 15 H 0.09 4.28 6.78 -2.91 -0.02 4.26 16 16 C 0.05 2.42 3.88 85.27 0.33 2.75 16 17 N -0.80 -40.10 10.83 21.84 0.24 -39.87 16 18 Si 0.96 36.50 29.60 68.60 2.03 38.53 16 19 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 20 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 21 H -0.27 -9.75 7.11 99.48 0.71 -9.04 16 22 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.03 1.37 7.91 -2.39 -0.02 1.35 16 25 H 0.05 2.14 6.66 -2.38 -0.02 2.13 16 26 H 0.07 2.27 8.04 -2.39 -0.02 2.25 16 27 H 0.13 4.56 8.05 -2.91 -0.02 4.53 16 28 H 0.11 4.47 8.06 -2.91 -0.02 4.45 16 29 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.40 7.49 9.12 -74.05 -0.68 6.81 16 32 H 0.11 5.76 6.12 -2.91 -0.02 5.74 16 33 H 0.29 13.16 8.30 -92.71 -0.77 12.39 16 Total: -1.00 -61.07 291.41 1.90 -59.17 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: 0.46 Total: 24.30 kcal Atomic # 6 Polarization: -64.24 SS G_CDS: 2.52 Total: -61.72 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.24 Total: -39.87 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -2.03 Total: -20.73 kcal Atomic # 14 Polarization: 36.50 SS G_CDS: 2.03 Total: 38.53 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -1.31 Total: 0.33 kcal Total: -61.07 1.90 -59.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396291199.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.000 kcal (2) G-P(sol) polarization free energy of solvation -61.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds