Wall clock time and date at job start Mon Mar 30 2020 06:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.46990 * 2 1 4 4 C 1.35221 * 119.56610 * 264.99716 * 3 2 1 5 5 C 1.41225 * 120.39269 * 179.97438 * 4 3 2 6 6 C 1.41004 * 120.20379 * 179.97438 * 5 4 3 7 7 H 1.08003 * 120.00072 * 153.75408 * 6 5 4 8 8 C 1.39876 * 119.99821 * 333.76068 * 6 5 4 9 9 N 1.30883 * 120.00283 * 343.36957 * 8 6 5 10 10 Si 1.86803 * 120.00067 * 163.37316 * 8 6 5 11 11 H 1.48499 * 109.46985 * 59.99430 * 10 8 6 12 12 H 1.48497 * 109.47473 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.46632 * 299.99914 * 10 8 6 14 14 C 1.40395 * 119.59656 * 0.02562 * 5 4 3 15 15 C 1.50698 * 120.01912 * 179.97438 * 14 5 4 16 16 O 1.42896 * 109.47160 * 89.99646 * 15 14 5 17 17 C 1.38844 * 119.96246 * 0.25226 * 14 5 4 18 18 S 1.76054 * 130.45313 * 179.75299 * 17 14 5 19 19 C 1.75478 * 91.54428 * 179.97438 * 18 17 14 20 20 C 1.32534 * 110.84429 * 359.41821 * 19 18 17 21 21 C 1.40380 * 120.17087 * 359.45139 * 17 14 5 22 22 H 1.08996 * 109.47439 * 300.00034 * 1 2 3 23 23 H 1.09007 * 109.47144 * 60.00091 * 1 2 3 24 24 H 1.09000 * 109.47034 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46933 * 239.99872 * 2 1 3 26 26 H 1.09003 * 109.46751 * 120.00209 * 2 1 3 27 27 H 1.07997 * 119.80224 * 0.02562 * 4 3 2 28 28 H 0.96998 * 120.00211 * 180.02562 * 9 8 6 29 29 H 1.09003 * 109.47021 * 330.00235 * 15 14 5 30 30 H 1.08996 * 109.47146 * 209.99500 * 15 14 5 31 31 H 0.96704 * 114.00329 * 179.97438 * 16 15 14 32 32 H 1.08001 * 124.57494 * 180.02562 * 19 18 17 33 33 H 1.08002 * 122.05820 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3514 2.0157 -1.1717 5 6 2.8232 3.3466 -1.1920 6 6 3.1553 3.9629 -2.4160 7 1 3.1033 5.0375 -2.5112 8 6 3.5520 3.1825 -3.5069 9 7 3.9292 1.9429 -3.3221 10 14 3.5436 3.9095 -5.2277 11 1 4.4548 5.0812 -5.2744 12 1 4.0041 2.8858 -6.1999 13 1 2.1657 4.3397 -5.5764 14 6 2.9607 4.0521 0.0140 15 6 3.4638 5.4726 0.0034 16 8 2.3575 6.3689 -0.1175 17 6 2.6382 3.4384 1.2170 18 16 2.7091 4.0499 2.8664 19 6 2.1147 2.5281 3.5067 20 6 1.8819 1.6640 2.5291 21 6 2.1638 2.1172 1.2301 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.2440 1.4700 -2.0974 28 1 4.2046 1.4018 -4.0786 29 1 4.1388 5.6126 -0.8409 30 1 3.9966 5.6762 0.9323 31 1 2.6076 7.3029 -0.1305 32 1 1.9506 2.3265 4.5549 33 1 1.5111 0.6679 2.7208 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396291287.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:06 Heat of formation + Delta-G solvation = -32.673272 kcal Electronic energy + Delta-G solvation = -17402.580180 eV Core-core repulsion = 14711.428326 eV Total energy + Delta-G solvation = -2691.151855 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.70661 -36.12390 -34.91823 -33.61231 -32.66531 -29.17258 -28.76331 -25.64508 -24.81852 -22.53446 -21.89675 -19.86336 -19.39322 -17.13887 -16.57192 -15.84385 -15.67738 -14.96562 -14.22649 -13.80747 -13.47091 -13.24534 -13.16844 -12.53075 -12.41155 -12.24738 -11.96204 -11.51753 -11.42446 -11.21873 -10.95283 -10.82029 -10.74615 -10.45895 -10.38414 -9.87891 -9.76634 -9.34936 -9.12875 -9.10625 -8.30940 -7.29527 -7.08968 -6.60109 -4.55874 1.92238 2.67317 2.71410 2.87520 2.94426 2.98281 3.07628 3.49899 3.74725 4.41466 5.13103 5.60662 5.61237 5.67471 5.81705 5.99452 6.02680 6.16356 6.21646 6.36044 6.36547 6.40884 6.58683 6.61964 6.75885 6.85327 6.97559 7.04530 7.20073 7.32025 7.69022 7.75211 7.87541 7.99588 8.31604 8.42254 8.61243 8.70103 9.88114 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.018703 B = 0.008546 C = 0.006266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.751281 B = 3275.754831 C = 4467.455168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.079 4.079 3 C -0.033 4.033 4 C -0.137 4.137 5 C 0.150 3.850 6 C -0.432 4.432 7 H 0.089 0.911 8 C 0.073 3.927 9 N -0.775 5.775 10 Si 0.915 3.085 11 H -0.262 1.262 12 H -0.276 1.276 13 H -0.260 1.260 14 C -0.207 4.207 15 C 0.142 3.858 16 O -0.568 6.568 17 C -0.037 4.037 18 S 0.002 5.998 19 C -0.275 4.275 20 C -0.069 4.069 21 C -0.201 4.201 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.045 0.955 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.125 0.875 28 H 0.287 0.713 29 H 0.052 0.948 30 H 0.025 0.975 31 H 0.358 0.642 32 H 0.143 0.857 33 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.304 -0.007 2.557 2.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 C -0.036 4.036 4 C -0.156 4.156 5 C 0.144 3.856 6 C -0.460 4.460 7 H 0.107 0.893 8 C -0.148 4.148 9 N -0.399 5.399 10 Si 0.738 3.262 11 H -0.187 1.187 12 H -0.200 1.200 13 H -0.184 1.184 14 C -0.216 4.216 15 C 0.066 3.934 16 O -0.372 6.372 17 C -0.153 4.153 18 S 0.262 5.738 19 C -0.408 4.408 20 C -0.099 4.099 21 C -0.207 4.207 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.065 0.935 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.143 0.857 28 H 0.098 0.902 29 H 0.070 0.930 30 H 0.043 0.957 31 H 0.202 0.798 32 H 0.161 0.839 33 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.135 0.488 3.182 3.414 hybrid contribution 0.018 -0.608 -1.259 1.399 sum -1.117 -0.120 1.923 2.227 Atomic orbital electron populations 1.21709 0.95797 1.00277 1.02093 1.20445 0.95329 0.94401 1.01460 1.19144 0.98515 0.94114 0.91830 1.20826 1.02019 0.96265 0.96490 1.17326 0.86202 0.91030 0.91026 1.19690 1.36610 0.95576 0.94127 0.89304 1.26078 0.92268 0.94508 1.01919 1.69830 1.27766 1.08105 1.34175 0.86240 0.80203 0.79756 0.79985 1.18672 1.20049 1.18432 1.18639 1.17354 0.95151 0.90462 1.20619 0.87525 0.87430 0.97853 1.86704 1.35297 1.18085 1.97128 1.22068 1.01895 0.96470 0.94829 1.83540 1.73200 1.16940 1.00080 1.24465 1.16559 0.98204 1.01552 1.19722 0.99525 0.98929 0.91692 1.17586 1.15549 0.94611 0.92926 0.92845 0.92752 0.93545 0.91722 0.92268 0.85745 0.90174 0.92952 0.95655 0.79789 0.83938 0.86434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.89 37.16 0.37 -1.94 16 2 C -0.08 -1.46 5.77 -27.88 -0.16 -1.62 16 3 C -0.03 -0.76 5.15 -104.27 -0.54 -1.30 16 4 C -0.14 -3.39 8.15 -39.52 -0.32 -3.71 16 5 C 0.15 3.88 5.55 -106.90 -0.59 3.28 16 6 C -0.43 -10.75 8.08 -37.92 -0.31 -11.06 16 7 H 0.09 2.16 6.87 -52.48 -0.36 1.80 16 8 C 0.07 1.70 5.14 -17.34 -0.09 1.61 16 9 N -0.78 -18.42 10.99 55.54 0.61 -17.80 16 10 Si 0.91 17.39 29.59 -169.99 -5.03 12.36 16 11 H -0.26 -4.93 7.11 56.52 0.40 -4.52 16 12 H -0.28 -5.08 7.11 56.52 0.40 -4.68 16 13 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 14 C -0.21 -5.17 5.59 -103.59 -0.58 -5.75 16 15 C 0.14 3.09 6.42 36.00 0.23 3.32 16 16 O -0.57 -11.73 13.64 -35.23 -0.48 -12.21 16 17 C -0.04 -0.90 6.29 -38.55 -0.24 -1.15 16 18 S 0.00 0.04 22.58 -107.50 -2.43 -2.38 16 19 C -0.27 -5.30 11.09 28.82 0.32 -4.98 16 20 C -0.07 -1.39 9.56 -40.66 -0.39 -1.78 16 21 C -0.20 -4.67 5.85 -106.83 -0.62 -5.29 16 22 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 1.17 8.00 -51.93 -0.42 0.75 16 26 H 0.06 1.02 7.36 -51.93 -0.38 0.64 16 27 H 0.12 3.10 6.19 -52.49 -0.32 2.77 16 28 H 0.29 6.17 8.30 -40.82 -0.34 5.83 16 29 H 0.05 1.11 6.76 -51.93 -0.35 0.76 16 30 H 0.03 0.51 7.58 -51.93 -0.39 0.12 16 31 H 0.36 5.24 9.12 45.56 0.42 5.66 16 32 H 0.14 2.30 8.06 -52.49 -0.42 1.87 16 33 H 0.12 2.07 7.47 -52.49 -0.39 1.68 16 LS Contribution 290.81 15.07 4.38 4.38 Total: -1.00 -27.85 290.81 -8.90 -36.75 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -3.03 Total: 9.28 kcal Atomic # 6 Polarization: -27.44 SS G_CDS: -2.93 Total: -30.37 kcal Atomic # 7 Polarization: -18.42 SS G_CDS: 0.61 Total: -17.80 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: -0.48 Total: -12.21 kcal Atomic # 14 Polarization: 17.39 SS G_CDS: -5.03 Total: 12.36 kcal Atomic # 16 Polarization: 0.04 SS G_CDS: -2.43 Total: -2.38 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.85 -8.90 -36.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396291287.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.074 kcal (2) G-P(sol) polarization free energy of solvation -27.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds