Wall clock time and date at job start Mon Mar 30 2020 06:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.46990 * 2 1 4 4 C 1.35221 * 119.56610 * 264.99716 * 3 2 1 5 5 C 1.41225 * 120.39269 * 179.97438 * 4 3 2 6 6 C 1.41004 * 120.20379 * 179.97438 * 5 4 3 7 7 H 1.08003 * 120.00072 * 153.75408 * 6 5 4 8 8 C 1.39876 * 119.99821 * 333.76068 * 6 5 4 9 9 N 1.30883 * 120.00283 * 343.36957 * 8 6 5 10 10 Si 1.86803 * 120.00067 * 163.37316 * 8 6 5 11 11 H 1.48499 * 109.46985 * 59.99430 * 10 8 6 12 12 H 1.48497 * 109.47473 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.46632 * 299.99914 * 10 8 6 14 14 C 1.40395 * 119.59656 * 0.02562 * 5 4 3 15 15 C 1.50698 * 120.01912 * 179.97438 * 14 5 4 16 16 O 1.42896 * 109.47160 * 89.99646 * 15 14 5 17 17 C 1.38844 * 119.96246 * 0.25226 * 14 5 4 18 18 S 1.76054 * 130.45313 * 179.75299 * 17 14 5 19 19 C 1.75478 * 91.54428 * 179.97438 * 18 17 14 20 20 C 1.32534 * 110.84429 * 359.41821 * 19 18 17 21 21 C 1.40380 * 120.17087 * 359.45139 * 17 14 5 22 22 H 1.08996 * 109.47439 * 300.00034 * 1 2 3 23 23 H 1.09007 * 109.47144 * 60.00091 * 1 2 3 24 24 H 1.09000 * 109.47034 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46933 * 239.99872 * 2 1 3 26 26 H 1.09003 * 109.46751 * 120.00209 * 2 1 3 27 27 H 1.07997 * 119.80224 * 0.02562 * 4 3 2 28 28 H 0.96998 * 120.00211 * 180.02562 * 9 8 6 29 29 H 1.09003 * 109.47021 * 330.00235 * 15 14 5 30 30 H 1.08996 * 109.47146 * 209.99500 * 15 14 5 31 31 H 0.96704 * 114.00329 * 179.97438 * 16 15 14 32 32 H 1.08001 * 124.57494 * 180.02562 * 19 18 17 33 33 H 1.08002 * 122.05820 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3514 2.0157 -1.1717 5 6 2.8232 3.3466 -1.1920 6 6 3.1553 3.9629 -2.4160 7 1 3.1033 5.0375 -2.5112 8 6 3.5520 3.1825 -3.5069 9 7 3.9292 1.9429 -3.3221 10 14 3.5436 3.9095 -5.2277 11 1 4.4548 5.0812 -5.2744 12 1 4.0041 2.8858 -6.1999 13 1 2.1657 4.3397 -5.5764 14 6 2.9607 4.0521 0.0140 15 6 3.4638 5.4726 0.0034 16 8 2.3575 6.3689 -0.1175 17 6 2.6382 3.4384 1.2170 18 16 2.7091 4.0499 2.8664 19 6 2.1147 2.5281 3.5067 20 6 1.8819 1.6640 2.5291 21 6 2.1638 2.1172 1.2301 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.2440 1.4700 -2.0974 28 1 4.2046 1.4018 -4.0786 29 1 4.1388 5.6126 -0.8409 30 1 3.9966 5.6762 0.9323 31 1 2.6076 7.3029 -0.1305 32 1 1.9506 2.3265 4.5549 33 1 1.5111 0.6679 2.7208 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396291287.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:06 Heat of formation + Delta-G solvation = -48.810888 kcal Electronic energy + Delta-G solvation = -17403.279960 eV Core-core repulsion = 14711.428326 eV Total energy + Delta-G solvation = -2691.851634 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.42077 -37.77769 -36.62609 -35.18603 -34.35809 -30.81178 -30.47804 -27.36880 -26.47423 -24.18394 -23.50593 -21.53717 -21.08444 -18.89698 -18.21420 -17.48787 -17.36733 -16.59998 -15.95257 -15.37479 -15.09950 -14.81246 -14.64069 -14.18754 -14.03850 -13.87959 -13.53143 -13.09579 -12.99237 -12.82836 -12.58360 -12.46911 -12.28572 -11.98923 -11.90832 -11.56947 -11.39642 -11.03814 -10.85396 -10.76411 -10.01446 -9.06828 -8.80823 -8.29166 -6.38845 0.25043 0.88949 1.00871 1.33403 1.39056 1.43165 1.49434 1.83937 2.16302 2.67898 3.43598 3.96824 4.09067 4.25103 4.34216 4.34946 4.49220 4.60545 4.62827 4.85244 4.86845 4.94239 4.98886 5.06032 5.13977 5.29037 5.34933 5.42788 5.46337 5.58748 5.95628 5.99184 6.09693 6.21350 6.51742 6.80245 6.89138 7.06051 8.19024 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.018703 B = 0.008546 C = 0.006266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.751281 B = 3275.754831 C = 4467.455168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.076 4.076 3 C -0.038 4.038 4 C -0.163 4.163 5 C 0.119 3.881 6 C -0.464 4.464 7 H 0.083 0.917 8 C 0.038 3.962 9 N -0.804 5.804 10 Si 0.983 3.017 11 H -0.257 1.257 12 H -0.263 1.263 13 H -0.262 1.262 14 C -0.236 4.236 15 C 0.152 3.848 16 O -0.584 6.584 17 C -0.075 4.075 18 S 0.019 5.981 19 C -0.254 4.254 20 C -0.084 4.084 21 C -0.214 4.214 22 H 0.051 0.949 23 H 0.039 0.961 24 H 0.079 0.921 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.113 0.887 28 H 0.295 0.705 29 H 0.048 0.952 30 H 0.037 0.963 31 H 0.383 0.617 32 H 0.183 0.817 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.849 -0.571 3.779 4.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.113 4.113 3 C -0.040 4.040 4 C -0.183 4.183 5 C 0.113 3.887 6 C -0.492 4.492 7 H 0.101 0.899 8 C -0.180 4.180 9 N -0.429 5.429 10 Si 0.803 3.197 11 H -0.181 1.181 12 H -0.187 1.187 13 H -0.186 1.186 14 C -0.245 4.245 15 C 0.075 3.925 16 O -0.392 6.392 17 C -0.190 4.190 18 S 0.279 5.721 19 C -0.387 4.387 20 C -0.113 4.113 21 C -0.220 4.220 22 H 0.070 0.930 23 H 0.058 0.942 24 H 0.098 0.902 25 H 0.081 0.919 26 H 0.095 0.905 27 H 0.131 0.869 28 H 0.106 0.894 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.231 0.769 32 H 0.201 0.799 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.674 -0.057 4.418 4.725 hybrid contribution 0.160 -0.430 -1.414 1.487 sum -1.514 -0.487 3.004 3.399 Atomic orbital electron populations 1.21645 0.93916 1.02226 1.01316 1.20489 0.96840 0.91788 1.02219 1.19588 0.97181 0.96036 0.91216 1.20834 1.03964 0.96520 0.96954 1.17716 0.87047 0.91942 0.91978 1.19810 1.38701 0.95527 0.95191 0.89919 1.26834 0.91262 0.94725 1.05146 1.69865 1.28279 1.09194 1.35523 0.85228 0.79959 0.79234 0.75284 1.18139 1.18709 1.18634 1.19055 1.17844 0.96742 0.90811 1.20453 0.87415 0.86547 0.98094 1.86623 1.35358 1.20047 1.97122 1.22485 1.02624 0.97510 0.96411 1.83413 1.73023 1.17843 0.97802 1.25017 1.13687 0.96653 1.03321 1.19931 1.00334 1.00689 0.90352 1.18075 1.14974 0.94546 0.94376 0.92992 0.94151 0.90188 0.91886 0.90487 0.86936 0.89425 0.93438 0.94532 0.76851 0.79946 0.83413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.13 9.89 71.98 0.71 -3.42 16 2 C -0.08 -2.73 5.77 29.85 0.17 -2.55 16 3 C -0.04 -1.74 5.15 -19.64 -0.10 -1.84 16 4 C -0.16 -8.43 8.15 22.31 0.18 -8.25 16 5 C 0.12 6.41 5.55 -21.34 -0.12 6.29 16 6 C -0.46 -24.18 8.08 23.35 0.19 -23.99 16 7 H 0.08 4.22 6.87 -2.91 -0.02 4.20 16 8 C 0.04 1.83 5.14 85.23 0.44 2.27 16 9 N -0.80 -39.51 10.99 21.82 0.24 -39.27 16 10 Si 0.98 36.23 29.59 68.60 2.03 38.25 16 11 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 12 H -0.26 -9.05 7.11 99.48 0.71 -8.34 16 13 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 14 C -0.24 -12.12 5.59 -19.19 -0.11 -12.22 16 15 C 0.15 6.72 6.42 71.24 0.46 7.18 16 16 O -0.58 -24.26 13.64 -148.98 -2.03 -26.29 16 17 C -0.08 -3.64 6.29 22.94 0.14 -3.49 16 18 S 0.02 0.75 22.58 -56.49 -1.28 -0.53 16 19 C -0.25 -8.86 11.09 66.68 0.74 -8.12 16 20 C -0.08 -3.15 9.56 21.66 0.21 -2.94 16 21 C -0.21 -9.79 5.85 -21.30 -0.12 -9.91 16 22 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.04 1.33 8.14 -2.38 -0.02 1.32 16 24 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.06 2.26 8.00 -2.39 -0.02 2.24 16 26 H 0.08 2.47 7.36 -2.39 -0.02 2.45 16 27 H 0.11 5.91 6.19 -2.91 -0.02 5.90 16 28 H 0.29 12.97 8.30 -92.71 -0.77 12.20 16 29 H 0.05 2.10 6.76 -2.39 -0.02 2.08 16 30 H 0.04 1.50 7.58 -2.39 -0.02 1.48 16 31 H 0.38 11.04 9.12 -74.05 -0.68 10.36 16 32 H 0.18 4.88 8.06 -2.91 -0.02 4.85 16 33 H 0.15 4.61 7.47 -2.91 -0.02 4.59 16 Total: -1.00 -61.63 290.81 2.22 -59.41 By element: Atomic # 1 Polarization: 28.95 SS G_CDS: 0.46 Total: 29.42 kcal Atomic # 6 Polarization: -63.79 SS G_CDS: 2.79 Total: -61.00 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.24 Total: -39.27 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -2.03 Total: -26.29 kcal Atomic # 14 Polarization: 36.23 SS G_CDS: 2.03 Total: 38.25 kcal Atomic # 16 Polarization: 0.75 SS G_CDS: -1.28 Total: -0.53 kcal Total: -61.63 2.22 -59.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396291287.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.603 kcal (2) G-P(sol) polarization free energy of solvation -61.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds