Wall clock time and date at job start Mon Mar 30 2020 06:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47050 * 2 1 4 4 C 1.37933 * 120.05535 * 90.00031 * 3 2 1 5 5 C 1.50702 * 119.61865 * 359.97438 * 4 3 2 6 6 O 1.42895 * 109.46873 * 180.02562 * 5 4 3 7 7 C 1.37751 * 120.76175 * 180.02562 * 4 3 2 8 8 C 1.41391 * 120.90476 * 0.02562 * 7 4 3 9 9 C 1.45456 * 129.16748 * 179.97438 * 8 7 4 10 10 C 1.31865 * 114.88798 * 180.02562 * 9 8 7 11 11 S 1.75301 * 111.32957 * 359.97438 * 10 9 8 12 12 C 1.39389 * 118.99316 * 359.97438 * 8 7 4 13 13 C 1.40373 * 120.06015 * 269.97999 * 3 2 1 14 14 C 1.40928 * 120.11897 * 0.02562 * 13 3 2 15 15 H 1.08001 * 119.99813 * 38.87673 * 14 13 3 16 16 C 1.39922 * 120.00066 * 218.87922 * 14 13 3 17 17 N 1.30864 * 119.99996 * 20.82461 * 16 14 13 18 18 Si 1.86800 * 120.00055 * 200.82107 * 16 14 13 19 19 H 1.48496 * 109.46948 * 89.99984 * 18 16 14 20 20 H 1.48505 * 109.47356 * 210.00395 * 18 16 14 21 21 H 1.48505 * 109.47007 * 330.00064 * 18 16 14 22 22 H 1.09001 * 109.47329 * 299.99603 * 1 2 3 23 23 H 1.08997 * 109.47479 * 59.99326 * 1 2 3 24 24 H 1.08998 * 109.47274 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46916 * 240.00481 * 2 1 3 26 26 H 1.09000 * 109.47590 * 120.00174 * 2 1 3 27 27 H 1.09000 * 109.46794 * 300.01682 * 5 4 3 28 28 H 1.08999 * 109.47315 * 60.01548 * 5 4 3 29 29 H 0.96700 * 113.99898 * 179.97438 * 6 5 4 30 30 H 1.07997 * 119.54629 * 179.97438 * 7 4 3 31 31 H 1.08004 * 122.55522 * 359.97438 * 9 8 7 32 32 H 1.08005 * 124.33410 * 180.02562 * 10 9 8 33 33 H 0.96997 * 120.00128 * 182.02931 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2626 2.0721 1.1939 5 6 2.0084 1.3549 2.4947 6 8 2.3154 2.2248 3.5860 7 6 2.7212 3.3710 1.2109 8 6 2.9672 4.0701 0.0067 9 6 3.4467 5.4299 -0.1845 10 6 3.5763 5.8007 -1.4433 11 16 3.1208 4.5099 -2.5385 12 6 2.7391 3.4250 -1.2077 13 6 2.2671 2.0836 -1.2149 14 6 2.0334 1.4229 -2.4376 15 1 1.1796 0.7701 -2.5440 16 6 2.9075 1.6126 -3.5136 17 7 4.1236 2.0462 -3.3001 18 14 2.3386 1.2468 -5.2548 19 1 1.7402 2.4700 -5.8472 20 1 3.4995 0.8166 -6.0749 21 1 1.3238 0.1630 -5.2266 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 0.9603 1.0606 2.5485 28 1 2.6383 0.4671 2.5492 29 1 2.1744 1.8283 4.4567 30 1 2.8945 3.8622 2.1569 31 1 3.6781 6.0862 0.6415 32 1 3.9200 6.7747 -1.7591 33 1 4.7200 2.2057 -4.0482 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396291405.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:55 Heat of formation + Delta-G solvation = -29.921914 kcal Electronic energy + Delta-G solvation = -17548.017230 eV Core-core repulsion = 14856.984684 eV Total energy + Delta-G solvation = -2691.032547 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.55752 -36.31435 -35.06402 -33.60330 -31.66429 -30.14892 -27.81719 -25.42281 -25.12516 -22.88668 -21.13608 -20.34797 -18.53346 -17.44831 -16.94359 -15.71538 -15.07756 -14.62473 -14.39376 -14.07744 -13.72804 -13.36130 -12.86179 -12.57895 -12.25475 -12.08645 -11.87480 -11.56941 -11.41348 -11.21771 -10.87058 -10.75082 -10.60210 -10.31245 -10.07623 -9.89547 -9.59544 -9.36148 -9.29705 -8.81887 -8.08613 -7.07898 -6.90957 -6.11926 -4.45305 2.04086 2.70588 2.94887 3.04331 3.09594 3.11622 3.54094 3.58729 3.94541 4.57297 4.76141 5.28809 5.61414 5.68163 5.84247 5.93360 6.00377 6.05197 6.20415 6.28858 6.47623 6.54380 6.60141 6.79719 6.89669 6.94982 7.00457 7.11006 7.33516 7.42525 7.66909 7.67165 7.92657 8.09458 8.14333 8.40976 8.72772 8.83233 10.15020 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.017613 B = 0.010117 C = 0.006837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.325955 B = 2766.957301 C = 4094.396119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.059 4.059 3 C -0.172 4.172 4 C -0.063 4.063 5 C 0.125 3.875 6 O -0.569 6.569 7 C -0.167 4.167 8 C -0.068 4.068 9 C -0.129 4.129 10 C -0.239 4.239 11 S 0.102 5.898 12 C -0.154 4.154 13 C 0.157 3.843 14 C -0.473 4.473 15 H 0.086 0.914 16 C 0.074 3.926 17 N -0.771 5.771 18 Si 0.893 3.107 19 H -0.265 1.265 20 H -0.278 1.278 21 H -0.262 1.262 22 H 0.043 0.957 23 H 0.056 0.944 24 H 0.040 0.960 25 H 0.072 0.928 26 H 0.044 0.956 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.368 0.632 30 H 0.106 0.894 31 H 0.119 0.881 32 H 0.143 0.857 33 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.719 -0.449 4.171 4.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.097 4.097 3 C -0.177 4.177 4 C -0.064 4.064 5 C 0.048 3.952 6 O -0.373 6.373 7 C -0.188 4.188 8 C -0.075 4.075 9 C -0.161 4.161 10 C -0.374 4.374 11 S 0.368 5.632 12 C -0.271 4.271 13 C 0.151 3.849 14 C -0.502 4.502 15 H 0.104 0.896 16 C -0.146 4.146 17 N -0.397 5.397 18 Si 0.717 3.283 19 H -0.190 1.190 20 H -0.203 1.203 21 H -0.185 1.185 22 H 0.062 0.938 23 H 0.075 0.925 24 H 0.059 0.941 25 H 0.091 0.909 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.213 0.787 30 H 0.124 0.876 31 H 0.137 0.863 32 H 0.160 0.840 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.347 -0.053 1.932 3.040 hybrid contribution -0.060 -0.266 1.143 1.175 sum -2.406 -0.319 3.075 3.917 Atomic orbital electron populations 1.21725 0.96871 0.99714 1.01572 1.20129 0.94314 0.94165 1.01072 1.19264 1.11775 0.95412 0.91254 1.18790 1.01362 0.94392 0.91896 1.20922 0.97900 0.91208 0.85132 1.86546 1.90963 1.43397 1.16375 1.19987 1.09313 0.94723 0.94778 1.19060 1.02114 0.92700 0.93646 1.20788 1.03717 0.95431 0.96205 1.25241 1.09666 1.03780 0.98663 1.83743 1.69320 1.01003 1.09134 1.22643 1.12677 0.98232 0.93525 1.16605 0.88244 0.87728 0.92331 1.19298 1.09963 1.25949 0.95016 0.89645 1.25791 0.93909 0.93893 1.00976 1.69825 1.04286 1.31128 1.34412 0.86499 0.79528 0.80045 0.82198 1.18984 1.20271 1.18541 0.93812 0.92469 0.94075 0.90910 0.93696 0.93375 0.93408 0.78656 0.87634 0.86316 0.83958 0.90386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.89 37.16 0.37 -2.06 16 2 C -0.06 -1.16 5.08 -27.88 -0.14 -1.31 16 3 C -0.17 -4.00 5.19 -103.93 -0.54 -4.54 16 4 C -0.06 -1.40 5.85 -104.91 -0.61 -2.01 16 5 C 0.13 2.19 6.13 36.01 0.22 2.41 16 6 O -0.57 -9.30 12.08 -35.23 -0.43 -9.73 16 7 C -0.17 -3.92 9.44 -38.56 -0.36 -4.29 16 8 C -0.07 -1.67 6.04 -105.40 -0.64 -2.30 16 9 C -0.13 -2.79 10.39 -38.61 -0.40 -3.19 16 10 C -0.24 -4.96 11.02 28.83 0.32 -4.64 16 11 S 0.10 2.39 19.88 -107.50 -2.14 0.26 16 12 C -0.15 -3.99 5.74 -37.63 -0.22 -4.20 16 13 C 0.16 4.04 5.37 -106.55 -0.57 3.47 16 14 C -0.47 -11.98 7.62 -37.93 -0.29 -12.27 16 15 H 0.09 2.09 7.00 -52.49 -0.37 1.72 16 16 C 0.07 1.80 4.27 -17.33 -0.07 1.73 16 17 N -0.77 -19.65 10.69 55.55 0.59 -19.06 16 18 Si 0.89 18.61 29.61 -169.99 -5.03 13.57 16 19 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 20 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 22 H 0.04 0.71 7.36 -51.93 -0.38 0.33 16 23 H 0.06 1.05 7.68 -51.93 -0.40 0.66 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.07 1.51 6.98 -51.93 -0.36 1.15 16 26 H 0.04 0.78 6.60 -51.93 -0.34 0.44 16 27 H 0.05 0.76 7.34 -51.93 -0.38 0.38 16 28 H 0.05 0.78 7.46 -51.93 -0.39 0.39 16 29 H 0.37 3.83 9.12 45.56 0.42 4.24 16 30 H 0.11 2.37 6.92 -52.49 -0.36 2.01 16 31 H 0.12 2.22 8.06 -52.48 -0.42 1.80 16 32 H 0.14 2.44 8.06 -52.48 -0.42 2.02 16 33 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 LS Contribution 284.62 15.07 4.29 4.29 Total: -1.00 -28.87 284.62 -8.63 -37.49 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -2.97 Total: 6.37 kcal Atomic # 6 Polarization: -30.25 SS G_CDS: -2.94 Total: -33.19 kcal Atomic # 7 Polarization: -19.65 SS G_CDS: 0.59 Total: -19.06 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: -0.43 Total: -9.73 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.57 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -2.14 Total: 0.26 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.87 -8.63 -37.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396291405.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.569 kcal (2) G-P(sol) polarization free energy of solvation -28.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds