Wall clock time and date at job start Mon Mar 30 2020 06:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47050 * 2 1 4 4 C 1.37933 * 120.05535 * 90.00031 * 3 2 1 5 5 C 1.50702 * 119.61865 * 359.97438 * 4 3 2 6 6 O 1.42895 * 109.46873 * 180.02562 * 5 4 3 7 7 C 1.37751 * 120.76175 * 180.02562 * 4 3 2 8 8 C 1.41391 * 120.90476 * 0.02562 * 7 4 3 9 9 C 1.45456 * 129.16748 * 179.97438 * 8 7 4 10 10 C 1.31865 * 114.88798 * 180.02562 * 9 8 7 11 11 S 1.75301 * 111.32957 * 359.97438 * 10 9 8 12 12 C 1.39389 * 118.99316 * 359.97438 * 8 7 4 13 13 C 1.40373 * 120.06015 * 269.97999 * 3 2 1 14 14 C 1.40928 * 120.11897 * 0.02562 * 13 3 2 15 15 H 1.08001 * 119.99813 * 38.87673 * 14 13 3 16 16 C 1.39922 * 120.00066 * 218.87922 * 14 13 3 17 17 N 1.30864 * 119.99996 * 20.82461 * 16 14 13 18 18 Si 1.86800 * 120.00055 * 200.82107 * 16 14 13 19 19 H 1.48496 * 109.46948 * 89.99984 * 18 16 14 20 20 H 1.48505 * 109.47356 * 210.00395 * 18 16 14 21 21 H 1.48505 * 109.47007 * 330.00064 * 18 16 14 22 22 H 1.09001 * 109.47329 * 299.99603 * 1 2 3 23 23 H 1.08997 * 109.47479 * 59.99326 * 1 2 3 24 24 H 1.08998 * 109.47274 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46916 * 240.00481 * 2 1 3 26 26 H 1.09000 * 109.47590 * 120.00174 * 2 1 3 27 27 H 1.09000 * 109.46794 * 300.01682 * 5 4 3 28 28 H 1.08999 * 109.47315 * 60.01548 * 5 4 3 29 29 H 0.96700 * 113.99898 * 179.97438 * 6 5 4 30 30 H 1.07997 * 119.54629 * 179.97438 * 7 4 3 31 31 H 1.08004 * 122.55522 * 359.97438 * 9 8 7 32 32 H 1.08005 * 124.33410 * 180.02562 * 10 9 8 33 33 H 0.96997 * 120.00128 * 182.02931 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2626 2.0721 1.1939 5 6 2.0084 1.3549 2.4947 6 8 2.3154 2.2248 3.5860 7 6 2.7212 3.3710 1.2109 8 6 2.9672 4.0701 0.0067 9 6 3.4467 5.4299 -0.1845 10 6 3.5763 5.8007 -1.4433 11 16 3.1208 4.5099 -2.5385 12 6 2.7391 3.4250 -1.2077 13 6 2.2671 2.0836 -1.2149 14 6 2.0334 1.4229 -2.4376 15 1 1.1796 0.7701 -2.5440 16 6 2.9075 1.6126 -3.5136 17 7 4.1236 2.0462 -3.3001 18 14 2.3386 1.2468 -5.2548 19 1 1.7402 2.4700 -5.8472 20 1 3.4995 0.8166 -6.0749 21 1 1.3238 0.1630 -5.2266 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 0.9603 1.0606 2.5485 28 1 2.6383 0.4671 2.5492 29 1 2.1744 1.8283 4.4567 30 1 2.8945 3.8622 2.1569 31 1 3.6781 6.0862 0.6415 32 1 3.9200 6.7747 -1.7591 33 1 4.7200 2.2057 -4.0482 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396291405.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:54 Heat of formation + Delta-G solvation = -47.026757 kcal Electronic energy + Delta-G solvation = -17548.758952 eV Core-core repulsion = 14856.984684 eV Total energy + Delta-G solvation = -2691.774268 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.24587 -37.70690 -36.73201 -35.33666 -33.24937 -31.89262 -29.44638 -27.22057 -26.68405 -24.47927 -22.83305 -22.02710 -20.20729 -19.22578 -18.32232 -17.49345 -16.79269 -16.22530 -15.80484 -15.67465 -15.33999 -14.91521 -14.55117 -14.21679 -13.86603 -13.71243 -13.42595 -13.30585 -12.97924 -12.90765 -12.55898 -12.31061 -12.23745 -11.87451 -11.57761 -11.54825 -11.21284 -11.09354 -10.87515 -10.56143 -9.88592 -8.84887 -8.71384 -7.92190 -6.33608 0.29681 0.92061 1.22853 1.37003 1.40444 1.47394 1.77997 1.83192 2.21956 2.76167 3.47917 3.57154 4.03179 4.24827 4.38509 4.49881 4.56227 4.58638 4.65603 4.80326 4.82575 5.01104 5.10610 5.17396 5.25292 5.28777 5.31006 5.54228 5.59664 5.72865 5.89832 5.95836 6.15627 6.34305 6.56680 6.90281 6.98273 7.07307 8.35005 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.017613 B = 0.010117 C = 0.006837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.325955 B = 2766.957301 C = 4094.396119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.057 4.057 3 C -0.181 4.181 4 C -0.074 4.074 5 C 0.133 3.867 6 O -0.585 6.585 7 C -0.180 4.180 8 C -0.093 4.093 9 C -0.140 4.140 10 C -0.224 4.224 11 S 0.073 5.927 12 C -0.190 4.190 13 C 0.122 3.878 14 C -0.494 4.494 15 H 0.083 0.917 16 C 0.041 3.959 17 N -0.802 5.802 18 Si 0.950 3.050 19 H -0.265 1.265 20 H -0.270 1.270 21 H -0.256 1.256 22 H 0.053 0.947 23 H 0.035 0.965 24 H 0.070 0.930 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.396 0.604 30 H 0.113 0.887 31 H 0.150 0.850 32 H 0.182 0.818 33 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.200 -0.707 5.197 6.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.094 4.094 3 C -0.186 4.186 4 C -0.076 4.076 5 C 0.056 3.944 6 O -0.393 6.393 7 C -0.201 4.201 8 C -0.100 4.100 9 C -0.172 4.172 10 C -0.358 4.358 11 S 0.338 5.662 12 C -0.307 4.307 13 C 0.116 3.884 14 C -0.524 4.524 15 H 0.101 0.899 16 C -0.175 4.175 17 N -0.429 5.429 18 Si 0.772 3.228 19 H -0.190 1.190 20 H -0.195 1.195 21 H -0.179 1.179 22 H 0.072 0.928 23 H 0.054 0.946 24 H 0.089 0.911 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.245 0.755 30 H 0.131 0.869 31 H 0.167 0.833 32 H 0.199 0.801 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.835 -0.323 2.997 4.138 hybrid contribution 0.099 -0.164 0.977 0.996 sum -2.736 -0.486 3.975 4.850 Atomic orbital electron populations 1.21638 0.94894 1.01504 1.01000 1.20151 0.95944 0.92005 1.01288 1.19759 1.10803 0.97038 0.91025 1.19332 0.99912 0.94300 0.94026 1.20821 0.99424 0.90805 0.83375 1.86466 1.91100 1.43982 1.17773 1.20275 1.09533 0.95571 0.94753 1.19583 1.02439 0.94228 0.93771 1.21069 1.03769 0.94765 0.97565 1.25576 1.08395 1.04271 0.97598 1.83619 1.70190 1.02219 1.10166 1.22953 1.14139 0.98930 0.94634 1.17076 0.89317 0.88352 0.93625 1.19429 1.10323 1.26711 0.95929 0.89926 1.26407 0.93650 0.93486 1.03979 1.69879 1.05189 1.32393 1.35392 0.85636 0.79314 0.79845 0.78021 1.19015 1.19464 1.17908 0.92772 0.94619 0.91065 0.92837 0.91195 0.91229 0.91800 0.75461 0.86888 0.83292 0.80062 0.90134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.34 9.89 71.98 0.71 -3.63 16 2 C -0.06 -2.16 5.08 29.85 0.15 -2.01 16 3 C -0.18 -8.45 5.19 -19.42 -0.10 -8.55 16 4 C -0.07 -3.23 5.85 -20.05 -0.12 -3.35 16 5 C 0.13 4.28 6.13 71.24 0.44 4.71 16 6 O -0.58 -17.46 12.08 -148.98 -1.80 -19.26 16 7 C -0.18 -8.42 9.44 22.93 0.22 -8.20 16 8 C -0.09 -4.58 6.04 -20.37 -0.12 -4.70 16 9 C -0.14 -5.92 10.39 23.32 0.24 -5.67 16 10 C -0.22 -9.04 11.02 67.01 0.74 -8.30 16 11 S 0.07 3.47 19.88 -56.49 -1.12 2.35 16 12 C -0.19 -10.06 5.74 23.53 0.14 -9.93 16 13 C 0.12 6.45 5.37 -21.12 -0.11 6.34 16 14 C -0.49 -25.78 7.62 23.34 0.18 -25.60 16 15 H 0.08 4.18 7.00 -2.91 -0.02 4.16 16 16 C 0.04 2.06 4.27 85.25 0.36 2.43 16 17 N -0.80 -41.93 10.69 21.82 0.23 -41.69 16 18 Si 0.95 38.64 29.61 68.60 2.03 40.67 16 19 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 20 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 21 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 22 H 0.05 1.63 7.36 -2.39 -0.02 1.62 16 23 H 0.03 1.29 7.68 -2.39 -0.02 1.28 16 24 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.05 2.23 6.98 -2.39 -0.02 2.22 16 26 H 0.07 2.28 6.60 -2.39 -0.02 2.26 16 27 H 0.07 1.96 7.34 -2.39 -0.02 1.94 16 28 H 0.06 1.87 7.46 -2.39 -0.02 1.85 16 29 H 0.40 6.83 9.12 -74.06 -0.68 6.16 16 30 H 0.11 4.98 6.92 -2.91 -0.02 4.96 16 31 H 0.15 5.25 8.06 -2.91 -0.02 5.23 16 32 H 0.18 5.71 8.06 -2.91 -0.02 5.69 16 33 H 0.29 13.93 8.30 -92.71 -0.77 13.16 16 Total: -1.00 -63.68 284.62 2.53 -61.15 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: 0.47 Total: 23.24 kcal Atomic # 6 Polarization: -69.18 SS G_CDS: 2.72 Total: -66.46 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: 0.23 Total: -41.69 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -1.80 Total: -19.26 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 2.03 Total: 40.67 kcal Atomic # 16 Polarization: 3.47 SS G_CDS: -1.12 Total: 2.35 kcal Total: -63.68 2.53 -61.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396291405.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.128 kcal (2) G-P(sol) polarization free energy of solvation -63.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds