Wall clock time and date at job start Mon Mar 30 2020 06:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47202 * 2 1 4 4 C 1.37707 * 119.88094 * 265.00523 * 3 2 1 5 5 C 1.39601 * 120.28088 * 180.27971 * 4 3 2 6 6 S 1.75983 * 130.27354 * 179.72424 * 5 4 3 7 7 C 1.75463 * 91.78947 * 179.97438 * 6 5 4 8 8 C 1.39921 * 124.82494 * 179.97438 * 7 6 5 9 9 H 1.07993 * 119.99994 * 180.02562 * 8 7 6 10 10 C 1.40188 * 119.99928 * 0.02562 * 8 7 6 11 11 N 1.30760 * 119.99978 * 0.02562 * 10 8 7 12 12 Si 1.86791 * 120.00123 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47111 * 359.97438 * 12 10 8 14 14 H 1.48493 * 109.47598 * 120.00039 * 12 10 8 15 15 H 1.48501 * 109.47261 * 240.00542 * 12 10 8 16 16 C 1.36947 * 110.34833 * 359.50227 * 7 6 5 17 17 C 1.39804 * 115.02948 * 0.65113 * 16 7 6 18 18 C 1.41892 * 128.54625 * 179.23474 * 17 16 7 19 19 C 1.35943 * 120.47404 * 180.02562 * 18 17 16 20 20 C 1.50701 * 119.67212 * 179.97438 * 19 18 17 21 21 O 1.42902 * 109.47030 * 0.02562 * 20 19 18 22 22 H 1.08999 * 109.47328 * 60.00023 * 1 2 3 23 23 H 1.08999 * 109.47375 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.47160 * 299.99677 * 1 2 3 25 25 H 1.09004 * 109.46714 * 240.00512 * 2 1 3 26 26 H 1.08999 * 109.47328 * 119.99977 * 2 1 3 27 27 H 1.08002 * 119.85688 * 359.97438 * 4 3 2 28 28 H 0.96996 * 120.00066 * 179.97438 * 11 10 8 29 29 H 1.08001 * 122.48786 * 179.90808 * 16 7 6 30 30 H 1.08005 * 119.75821 * 0.02562 * 18 17 16 31 31 H 1.09007 * 109.47419 * 120.01596 * 20 19 18 32 32 H 1.08998 * 109.47105 * 240.01802 * 20 19 18 33 33 H 0.96703 * 113.99429 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3590 2.0330 -1.1895 5 6 2.8307 3.3469 -1.1987 6 16 3.3251 4.3687 -2.5435 7 6 3.6989 5.7014 -1.4651 8 6 4.1849 6.9481 -1.8741 9 1 4.3896 7.7147 -1.1416 10 6 4.4060 7.2021 -3.2350 11 7 4.1577 6.2740 -4.1220 12 14 5.0554 8.8661 -3.7811 13 1 5.2529 9.7347 -2.5928 14 1 6.3510 8.6857 -4.4837 15 1 4.0778 9.5015 -4.7008 16 6 3.4376 5.3514 -0.1671 17 6 2.9607 4.0492 0.0098 18 6 2.6160 3.3903 1.2183 19 6 2.1648 2.1081 1.2000 20 6 1.8044 1.4256 2.4944 21 8 2.0211 2.3249 3.5836 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8901 25 1 1.8932 -0.5138 -0.8901 26 1 1.8933 -0.5138 0.8900 27 1 2.2546 1.4926 -2.1187 28 1 4.3103 6.4498 -5.0636 29 1 3.5997 6.0270 0.6597 30 1 2.7129 3.9114 2.1594 31 1 0.7552 1.1308 2.4700 32 1 2.4275 0.5407 2.6243 33 1 1.8096 1.9513 4.4501 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396291910.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:44 Heat of formation + Delta-G solvation = -48.885038 kcal Electronic energy + Delta-G solvation = -16756.372816 eV Core-core repulsion = 14064.517966 eV Total energy + Delta-G solvation = -2691.854849 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.82903 -36.40564 -35.23287 -34.04553 -31.73674 -30.32470 -28.54443 -25.99348 -25.11002 -22.67433 -21.28497 -20.69294 -18.69360 -17.86065 -16.93901 -15.72458 -15.39839 -14.74436 -14.51174 -14.27112 -13.83669 -13.40310 -12.96185 -12.70769 -12.59032 -12.26459 -11.92322 -11.86502 -11.51715 -11.48404 -11.09840 -10.95002 -10.71170 -10.45097 -10.33598 -9.90383 -9.89773 -9.75858 -9.11199 -9.00741 -8.29622 -7.24685 -7.14413 -6.31243 -4.63235 2.09729 2.43889 2.81390 2.86605 2.94211 3.32864 3.57171 3.61031 3.90060 4.56079 4.61873 5.09402 5.32096 5.37460 5.55207 5.66513 5.68098 5.86513 5.93074 6.10838 6.14050 6.21696 6.50355 6.63135 6.69768 6.76596 6.91053 7.24712 7.26295 7.39520 7.55147 7.60386 7.77374 7.92139 7.98375 8.15582 8.37419 8.46582 9.68787 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.035222 B = 0.005241 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.777317 B = 5341.672777 C = 6035.137487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.068 4.068 3 C -0.159 4.159 4 C -0.047 4.047 5 C -0.264 4.264 6 S 0.135 5.865 7 C 0.055 3.945 8 C -0.386 4.386 9 H 0.099 0.901 10 C 0.053 3.947 11 N -0.779 5.779 12 Si 0.938 3.062 13 H -0.256 1.256 14 H -0.268 1.268 15 H -0.268 1.268 16 C -0.362 4.362 17 C 0.014 3.986 18 C -0.122 4.122 19 C -0.084 4.084 20 C 0.125 3.875 21 O -0.567 6.567 22 H 0.054 0.946 23 H 0.047 0.953 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.101 0.899 28 H 0.300 0.700 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.070 -6.413 3.859 8.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.106 4.106 3 C -0.162 4.162 4 C -0.070 4.070 5 C -0.379 4.379 6 S 0.395 5.605 7 C -0.064 4.064 8 C -0.420 4.420 9 H 0.116 0.884 10 C -0.168 4.168 11 N -0.405 5.405 12 Si 0.761 3.239 13 H -0.179 1.179 14 H -0.193 1.193 15 H -0.193 1.193 16 C -0.387 4.387 17 C 0.006 3.994 18 C -0.142 4.142 19 C -0.086 4.086 20 C 0.048 3.952 21 O -0.371 6.371 22 H 0.073 0.927 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.120 0.880 28 H 0.113 0.887 29 H 0.123 0.877 30 H 0.130 0.870 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -2.787 -6.220 1.573 6.995 hybrid contribution 0.021 0.505 1.696 1.770 sum -2.766 -5.715 3.269 7.141 Atomic orbital electron populations 1.21777 0.96033 1.00373 1.02095 1.20280 0.95166 0.93843 1.01297 1.18838 1.09266 0.95783 0.92264 1.19940 0.98515 0.92550 0.95971 1.23698 1.13589 0.99716 1.00868 1.84741 1.67873 1.03394 1.04481 1.21426 0.94607 0.96132 0.94225 1.19354 1.32604 0.97370 0.92711 0.88351 1.26309 0.93737 1.00373 0.96370 1.68648 1.33907 1.33694 1.04269 0.85726 0.79023 0.79548 0.79634 1.17904 1.19264 1.19269 1.19623 1.26304 0.97230 0.95553 1.18064 0.95873 0.93393 0.92045 1.20346 1.03041 0.94375 0.96423 1.18585 1.03032 0.94980 0.92034 1.20888 0.98286 0.90768 0.85257 1.86558 1.90666 1.42877 1.17030 0.92667 0.93439 0.92972 0.92109 0.92397 0.88044 0.88708 0.87659 0.86978 0.93264 0.93422 0.78308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.88 37.16 0.37 -1.56 16 2 C -0.07 -1.02 5.55 -27.88 -0.15 -1.17 16 3 C -0.16 -3.09 5.14 -104.56 -0.54 -3.63 16 4 C -0.05 -1.03 9.69 -39.27 -0.38 -1.41 16 5 C -0.26 -6.56 6.47 -38.27 -0.25 -6.81 16 6 S 0.13 3.41 20.13 -107.50 -2.16 1.25 16 7 C 0.06 1.49 6.11 -39.42 -0.24 1.25 16 8 C -0.39 -9.81 9.27 -38.22 -0.35 -10.16 16 9 H 0.10 2.37 7.85 -52.49 -0.41 1.96 16 10 C 0.05 1.23 5.50 -17.28 -0.09 1.14 16 11 N -0.78 -18.54 10.58 55.56 0.59 -17.95 16 12 Si 0.94 17.23 29.56 -169.99 -5.03 12.21 16 13 H -0.26 -4.65 7.11 56.52 0.40 -4.25 16 14 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 15 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 16 C -0.36 -9.63 10.14 -39.46 -0.40 -10.03 16 17 C 0.01 0.37 5.86 -107.11 -0.63 -0.26 16 18 C -0.12 -2.83 9.38 -39.01 -0.37 -3.20 16 19 C -0.08 -1.69 5.83 -105.19 -0.61 -2.31 16 20 C 0.13 1.95 6.20 36.01 0.22 2.17 16 21 O -0.57 -8.68 12.07 -35.23 -0.43 -9.11 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.05 0.69 6.76 -51.92 -0.35 0.34 16 25 H 0.06 0.85 8.05 -51.93 -0.42 0.44 16 26 H 0.06 0.77 6.81 -51.93 -0.35 0.42 16 27 H 0.10 1.99 8.06 -52.49 -0.42 1.57 16 28 H 0.30 6.34 8.29 -40.82 -0.34 6.00 16 29 H 0.11 2.70 8.06 -52.49 -0.42 2.28 16 30 H 0.11 2.56 6.91 -52.48 -0.36 2.20 16 31 H 0.05 0.68 6.73 -51.93 -0.35 0.33 16 32 H 0.05 0.66 7.49 -51.93 -0.39 0.27 16 33 H 0.37 3.46 9.12 45.56 0.42 3.88 16 LS Contribution 289.08 15.07 4.36 4.36 Total: -1.00 -29.06 289.08 -9.14 -38.20 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -3.05 Total: 7.03 kcal Atomic # 6 Polarization: -32.55 SS G_CDS: -3.43 Total: -35.98 kcal Atomic # 7 Polarization: -18.54 SS G_CDS: 0.59 Total: -17.95 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -0.43 Total: -9.11 kcal Atomic # 14 Polarization: 17.23 SS G_CDS: -5.03 Total: 12.21 kcal Atomic # 16 Polarization: 3.41 SS G_CDS: -2.16 Total: 1.25 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.06 -9.14 -38.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396291910.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.688 kcal (2) G-P(sol) polarization free energy of solvation -29.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds