Wall clock time and date at job start Mon Mar 30 2020 06:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47202 * 2 1 4 4 C 1.37707 * 119.88094 * 265.00523 * 3 2 1 5 5 C 1.39601 * 120.28088 * 180.27971 * 4 3 2 6 6 S 1.75983 * 130.27354 * 179.72424 * 5 4 3 7 7 C 1.75463 * 91.78947 * 179.97438 * 6 5 4 8 8 C 1.39921 * 124.82494 * 179.97438 * 7 6 5 9 9 H 1.07993 * 119.99994 * 180.02562 * 8 7 6 10 10 C 1.40188 * 119.99928 * 0.02562 * 8 7 6 11 11 N 1.30760 * 119.99978 * 0.02562 * 10 8 7 12 12 Si 1.86791 * 120.00123 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47111 * 359.97438 * 12 10 8 14 14 H 1.48493 * 109.47598 * 120.00039 * 12 10 8 15 15 H 1.48501 * 109.47261 * 240.00542 * 12 10 8 16 16 C 1.36947 * 110.34833 * 359.50227 * 7 6 5 17 17 C 1.39804 * 115.02948 * 0.65113 * 16 7 6 18 18 C 1.41892 * 128.54625 * 179.23474 * 17 16 7 19 19 C 1.35943 * 120.47404 * 180.02562 * 18 17 16 20 20 C 1.50701 * 119.67212 * 179.97438 * 19 18 17 21 21 O 1.42902 * 109.47030 * 0.02562 * 20 19 18 22 22 H 1.08999 * 109.47328 * 60.00023 * 1 2 3 23 23 H 1.08999 * 109.47375 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.47160 * 299.99677 * 1 2 3 25 25 H 1.09004 * 109.46714 * 240.00512 * 2 1 3 26 26 H 1.08999 * 109.47328 * 119.99977 * 2 1 3 27 27 H 1.08002 * 119.85688 * 359.97438 * 4 3 2 28 28 H 0.96996 * 120.00066 * 179.97438 * 11 10 8 29 29 H 1.08001 * 122.48786 * 179.90808 * 16 7 6 30 30 H 1.08005 * 119.75821 * 0.02562 * 18 17 16 31 31 H 1.09007 * 109.47419 * 120.01596 * 20 19 18 32 32 H 1.08998 * 109.47105 * 240.01802 * 20 19 18 33 33 H 0.96703 * 113.99429 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3590 2.0330 -1.1895 5 6 2.8307 3.3469 -1.1987 6 16 3.3251 4.3687 -2.5435 7 6 3.6989 5.7014 -1.4651 8 6 4.1849 6.9481 -1.8741 9 1 4.3896 7.7147 -1.1416 10 6 4.4060 7.2021 -3.2350 11 7 4.1577 6.2740 -4.1220 12 14 5.0554 8.8661 -3.7811 13 1 5.2529 9.7347 -2.5928 14 1 6.3510 8.6857 -4.4837 15 1 4.0778 9.5015 -4.7008 16 6 3.4376 5.3514 -0.1671 17 6 2.9607 4.0492 0.0098 18 6 2.6160 3.3903 1.2183 19 6 2.1648 2.1081 1.2000 20 6 1.8044 1.4256 2.4944 21 8 2.0211 2.3249 3.5836 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8901 25 1 1.8932 -0.5138 -0.8901 26 1 1.8933 -0.5138 0.8900 27 1 2.2546 1.4926 -2.1187 28 1 4.3103 6.4498 -5.0636 29 1 3.5997 6.0270 0.6597 30 1 2.7129 3.9114 2.1594 31 1 0.7552 1.1308 2.4700 32 1 2.4275 0.5407 2.6243 33 1 1.8096 1.9513 4.4501 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396291910.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:43 Heat of formation + Delta-G solvation = -66.381980 kcal Electronic energy + Delta-G solvation = -16757.131540 eV Core-core repulsion = 14064.517966 eV Total energy + Delta-G solvation = -2692.613574 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.45796 -37.79537 -36.87385 -35.70514 -33.26921 -31.96899 -30.21732 -27.61114 -26.62485 -24.17678 -23.00354 -22.24794 -20.43240 -19.70312 -18.22661 -17.46662 -17.03017 -16.20430 -15.87002 -15.75810 -15.38020 -14.86809 -14.38801 -14.30484 -14.17290 -13.94810 -13.51946 -13.34901 -13.19000 -12.97319 -12.57530 -12.46233 -11.98438 -11.92849 -11.87141 -11.53144 -11.44066 -11.22258 -10.93437 -10.74301 -10.07201 -9.05955 -8.92248 -8.21808 -6.56155 0.32105 0.68454 1.29579 1.33745 1.42489 1.53876 1.82635 1.89316 2.13209 2.82153 3.23561 3.45872 4.05721 4.12709 4.27140 4.28846 4.49246 4.55317 4.69559 4.80869 4.88932 4.89516 4.98483 5.06736 5.14442 5.16928 5.43295 5.46699 5.55529 5.56091 5.77557 5.90606 5.95507 6.07833 6.35051 6.50169 6.56468 7.03203 7.94956 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.035222 B = 0.005241 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.777317 B = 5341.672777 C = 6035.137487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.067 4.067 3 C -0.141 4.141 4 C -0.064 4.064 5 C -0.285 4.285 6 S 0.121 5.879 7 C 0.027 3.973 8 C -0.418 4.418 9 H 0.099 0.901 10 C 0.017 3.983 11 N -0.801 5.801 12 Si 1.015 2.985 13 H -0.255 1.255 14 H -0.256 1.256 15 H -0.256 1.256 16 C -0.399 4.399 17 C -0.016 4.016 18 C -0.146 4.146 19 C -0.083 4.083 20 C 0.128 3.872 21 O -0.591 6.591 22 H 0.040 0.960 23 H 0.079 0.921 24 H 0.052 0.948 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.120 0.880 28 H 0.313 0.687 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.752 -8.284 4.076 9.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 C -0.143 4.143 4 C -0.087 4.087 5 C -0.399 4.399 6 S 0.381 5.619 7 C -0.092 4.092 8 C -0.452 4.452 9 H 0.117 0.883 10 C -0.201 4.201 11 N -0.427 5.427 12 Si 0.833 3.167 13 H -0.178 1.178 14 H -0.180 1.180 15 H -0.180 1.180 16 C -0.424 4.424 17 C -0.023 4.023 18 C -0.165 4.165 19 C -0.085 4.085 20 C 0.051 3.949 21 O -0.400 6.400 22 H 0.060 0.940 23 H 0.098 0.902 24 H 0.071 0.929 25 H 0.091 0.909 26 H 0.102 0.898 27 H 0.138 0.862 28 H 0.126 0.874 29 H 0.113 0.887 30 H 0.124 0.876 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -3.487 -8.131 1.826 9.033 hybrid contribution 0.162 0.907 1.723 1.953 sum -3.325 -7.224 3.548 8.708 Atomic orbital electron populations 1.21749 0.94415 1.02325 1.01510 1.20412 0.96378 0.90423 1.03265 1.19463 1.05971 0.97928 0.90977 1.20328 0.98723 0.91608 0.98016 1.23929 1.14777 1.01066 1.00132 1.84393 1.68824 1.03583 1.05147 1.21757 0.95470 0.97306 0.94666 1.19677 1.33927 0.97217 0.94341 0.88332 1.27314 0.93058 1.04397 0.95339 1.68673 1.33332 1.35509 1.05175 0.84629 0.78793 0.74134 0.79171 1.17831 1.17996 1.18017 1.19730 1.28879 0.98283 0.95504 1.18316 0.97017 0.93410 0.93590 1.20465 1.04749 0.96047 0.95284 1.19227 1.00394 0.93856 0.95020 1.20939 1.00280 0.90617 0.83033 1.86501 1.90984 1.43849 1.18641 0.94029 0.90246 0.92897 0.90917 0.89757 0.86173 0.87368 0.88716 0.87605 0.90547 0.90555 0.75174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.88 71.98 0.71 -2.44 16 2 C -0.07 -1.71 5.55 29.85 0.17 -1.54 16 3 C -0.14 -5.17 5.14 -19.83 -0.10 -5.27 16 4 C -0.06 -2.77 9.69 22.47 0.22 -2.56 16 5 C -0.28 -14.65 6.47 23.12 0.15 -14.50 16 6 S 0.12 6.42 20.13 -56.49 -1.14 5.28 16 7 C 0.03 1.55 6.11 22.37 0.14 1.68 16 8 C -0.42 -22.32 9.27 23.15 0.21 -22.10 16 9 H 0.10 5.03 7.85 -2.91 -0.02 5.01 16 10 C 0.02 0.83 5.50 85.33 0.47 1.29 16 11 N -0.80 -38.78 10.58 21.87 0.23 -38.55 16 12 Si 1.02 35.07 29.56 68.60 2.03 37.10 16 13 H -0.26 -8.70 7.11 99.48 0.71 -7.99 16 14 H -0.26 -8.33 7.11 99.48 0.71 -7.62 16 15 H -0.26 -8.34 7.11 99.48 0.71 -7.63 16 16 C -0.40 -22.86 10.14 22.35 0.23 -22.64 16 17 C -0.02 -0.86 5.86 -21.48 -0.13 -0.98 16 18 C -0.15 -6.92 9.38 22.64 0.21 -6.71 16 19 C -0.08 -3.21 5.83 -20.23 -0.12 -3.32 16 20 C 0.13 3.51 6.20 71.24 0.44 3.95 16 21 O -0.59 -16.64 12.07 -148.98 -1.80 -18.44 16 22 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.05 1.16 6.76 -2.38 -0.02 1.14 16 25 H 0.07 1.72 8.05 -2.38 -0.02 1.70 16 26 H 0.08 1.76 6.81 -2.39 -0.02 1.74 16 27 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 28 H 0.31 13.21 8.29 -92.71 -0.77 12.44 16 29 H 0.09 5.34 8.06 -2.91 -0.02 5.32 16 30 H 0.11 5.03 6.91 -2.91 -0.02 5.01 16 31 H 0.08 1.73 6.73 -2.38 -0.02 1.71 16 32 H 0.08 1.71 7.49 -2.39 -0.02 1.69 16 33 H 0.40 6.14 9.12 -74.06 -0.68 5.47 16 Total: -1.00 -67.27 289.08 2.39 -64.88 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: 0.46 Total: 24.86 kcal Atomic # 6 Polarization: -77.74 SS G_CDS: 2.60 Total: -75.14 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.23 Total: -38.55 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -1.80 Total: -18.44 kcal Atomic # 14 Polarization: 35.07 SS G_CDS: 2.03 Total: 37.10 kcal Atomic # 16 Polarization: 6.42 SS G_CDS: -1.14 Total: 5.28 kcal Total: -67.27 2.39 -64.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396291910.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.502 kcal (2) G-P(sol) polarization free energy of solvation -67.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds