Wall clock time and date at job start Mon Mar 30 2020 06:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.46855 * 2 1 4 4 C 1.37924 * 119.61744 * 264.99790 * 3 2 1 5 5 C 1.40380 * 119.87906 * 180.02562 * 4 3 2 6 6 C 1.40932 * 120.11056 * 180.02562 * 5 4 3 7 7 H 1.08001 * 119.99672 * 149.97920 * 6 5 4 8 8 C 1.39921 * 120.00482 * 329.97992 * 6 5 4 9 9 N 1.30867 * 120.00322 * 161.76048 * 8 6 5 10 10 Si 1.86809 * 119.99875 * 341.76139 * 8 6 5 11 11 H 1.48500 * 109.47053 * 95.40626 * 10 8 6 12 12 H 1.48493 * 109.47402 * 215.40765 * 10 8 6 13 13 H 1.48496 * 109.46928 * 335.41182 * 10 8 6 14 14 C 1.42184 * 119.77110 * 0.02562 * 5 4 3 15 15 S 1.75899 * 130.53747 * 179.97438 * 14 5 4 16 16 C 1.75313 * 92.16986 * 179.83597 * 15 14 5 17 17 C 1.31861 * 111.33085 * 0.34228 * 16 15 14 18 18 C 1.39392 * 119.69673 * 359.97438 * 14 5 4 19 19 C 1.37750 * 119.61576 * 85.02237 * 3 2 1 20 20 C 1.50699 * 119.55260 * 359.97421 * 19 3 2 21 21 O 1.42902 * 109.47341 * 270.00526 * 20 19 3 22 22 H 1.09004 * 109.47251 * 299.99853 * 1 2 3 23 23 H 1.08999 * 109.47142 * 60.00270 * 1 2 3 24 24 H 1.09003 * 109.47004 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.46982 * 239.99808 * 2 1 3 26 26 H 1.08999 * 109.47142 * 119.99730 * 2 1 3 27 27 H 1.07999 * 120.06230 * 0.02562 * 4 3 2 28 28 H 0.97002 * 120.00030 * 179.97438 * 9 8 6 29 29 H 1.07999 * 124.33169 * 180.19895 * 16 15 14 30 30 H 1.08000 * 122.55617 * 179.85614 * 17 16 15 31 31 H 1.08998 * 109.46988 * 29.99954 * 20 19 3 32 32 H 1.09001 * 109.47430 * 150.00009 * 20 19 3 33 33 H 0.96697 * 114.00146 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3581 2.0287 -1.1945 5 6 2.8270 3.3518 -1.2008 6 6 3.1607 3.9778 -2.4186 7 1 3.0506 5.0470 -2.5240 8 6 3.6348 3.2142 -3.4910 9 7 3.6076 3.7028 -4.7047 10 14 4.3063 1.4972 -3.1901 11 1 3.2333 0.4978 -3.4248 12 1 5.4359 1.2378 -4.1184 13 1 4.7835 1.3910 -1.7879 14 6 2.9640 4.0582 0.0255 15 16 3.5155 5.6976 0.3451 16 6 3.2840 5.5099 2.0728 17 6 2.8361 4.3055 2.3686 18 6 2.6308 3.4307 1.2248 19 6 2.1612 2.0973 1.1930 20 6 1.7974 1.4067 2.4821 21 8 0.4171 1.6361 2.7724 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 2.2526 1.4877 -2.1232 28 1 3.9366 3.1736 -5.4481 29 1 3.4849 6.2811 2.8016 30 1 2.6325 3.9940 3.3825 31 1 1.9747 0.3358 2.3832 32 1 2.4098 1.8030 3.2921 33 1 0.1126 1.2194 3.5901 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396292855.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:23 Heat of formation + Delta-G solvation = -28.052354 kcal Electronic energy + Delta-G solvation = -17516.991762 eV Core-core repulsion = 14826.040285 eV Total energy + Delta-G solvation = -2690.951477 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.87704 -36.15473 -35.13717 -34.12825 -32.17975 -30.27890 -27.92850 -26.98890 -23.53895 -23.35235 -21.99020 -20.38730 -18.92753 -17.43197 -16.92721 -16.40399 -15.68260 -14.97228 -14.40710 -13.90948 -13.74900 -13.29154 -13.10282 -12.96511 -12.45422 -12.38491 -12.27475 -11.74670 -11.53076 -11.37520 -10.94811 -10.83440 -10.77966 -10.46848 -10.17464 -9.82397 -9.78448 -9.62557 -9.27013 -9.25497 -8.33857 -7.42791 -7.11802 -6.83611 -4.60799 1.73922 2.36052 2.56509 3.00723 3.10231 3.13259 3.17127 3.31252 3.88920 4.25118 4.97679 5.23931 5.34112 5.55253 5.58505 5.70169 5.79454 5.93176 5.95901 6.06666 6.21082 6.28044 6.33763 6.43425 6.57217 6.68776 6.79439 6.83367 7.12481 7.16754 7.28971 7.53340 7.76346 7.91189 8.06796 8.16893 8.42160 8.59726 9.88777 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.015687 B = 0.010887 C = 0.006969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.494457 B = 2571.254664 C = 4016.587035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.004 4.004 4 C -0.249 4.249 5 C 0.134 3.866 6 C -0.433 4.433 7 H 0.095 0.905 8 C 0.086 3.914 9 N -0.793 5.793 10 Si 0.913 3.087 11 H -0.267 1.267 12 H -0.289 1.289 13 H -0.241 1.241 14 C -0.201 4.201 15 S 0.060 5.940 16 C -0.213 4.213 17 C -0.125 4.125 18 C -0.017 4.017 19 C -0.195 4.195 20 C 0.138 3.862 21 O -0.566 6.566 22 H 0.071 0.929 23 H 0.052 0.948 24 H 0.043 0.957 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.107 0.893 28 H 0.289 0.711 29 H 0.151 0.849 30 H 0.126 0.874 31 H 0.042 0.958 32 H 0.035 0.965 33 H 0.360 0.640 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.122 -4.628 9.697 10.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.005 4.005 4 C -0.272 4.272 5 C 0.128 3.872 6 C -0.460 4.460 7 H 0.113 0.887 8 C -0.135 4.135 9 N -0.415 5.415 10 Si 0.738 3.262 11 H -0.192 1.192 12 H -0.217 1.217 13 H -0.164 1.164 14 C -0.316 4.316 15 S 0.323 5.677 16 C -0.347 4.347 17 C -0.157 4.157 18 C -0.025 4.025 19 C -0.199 4.199 20 C 0.061 3.939 21 O -0.370 6.370 22 H 0.090 0.910 23 H 0.071 0.929 24 H 0.062 0.938 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.125 0.875 28 H 0.100 0.900 29 H 0.169 0.831 30 H 0.143 0.857 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -0.501 -2.980 7.959 8.513 hybrid contribution -0.195 -2.029 1.278 2.406 sum -0.695 -5.009 9.238 10.531 Atomic orbital electron populations 1.21781 0.94960 1.00357 1.03246 1.20558 0.96316 0.94120 1.01226 1.18993 0.94997 0.94077 0.92480 1.20600 1.13575 0.96919 0.96071 1.17041 0.89075 0.90824 0.90215 1.19487 1.35782 0.97364 0.93384 0.88704 1.26218 0.92981 1.00529 0.93792 1.69702 1.32513 1.39319 1.00012 0.86256 0.78589 0.80717 0.80602 1.19247 1.21657 1.16391 1.22559 1.14957 0.97430 0.96667 1.83712 1.71063 1.13814 0.99112 1.24937 1.08728 1.00979 1.00069 1.20847 1.02969 0.93530 0.98372 1.18761 0.99249 0.93680 0.90782 1.18324 1.15092 0.93760 0.92716 1.20729 0.81417 0.97088 0.94644 1.86723 1.26985 1.77993 1.45294 0.90991 0.92853 0.93800 0.92270 0.91818 0.87493 0.90037 0.83137 0.85657 0.94043 0.94715 0.79531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.88 37.16 0.37 -2.01 16 2 C -0.08 -1.51 5.52 -27.88 -0.15 -1.66 16 3 C 0.00 -0.09 5.11 -104.91 -0.54 -0.62 16 4 C -0.25 -6.01 6.76 -38.89 -0.26 -6.28 16 5 C 0.13 3.45 5.12 -106.56 -0.55 2.91 16 6 C -0.43 -11.61 9.31 -37.93 -0.35 -11.96 16 7 H 0.10 2.68 8.01 -52.49 -0.42 2.26 16 8 C 0.09 2.21 5.40 -17.33 -0.09 2.12 16 9 N -0.79 -20.60 13.93 55.55 0.77 -19.83 16 10 Si 0.91 20.47 24.52 -169.99 -4.17 16.30 16 11 H -0.27 -5.75 6.71 56.52 0.38 -5.37 16 12 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 13 H -0.24 -5.58 6.87 56.52 0.39 -5.19 16 14 C -0.20 -4.87 6.36 -37.64 -0.24 -5.11 16 15 S 0.06 1.25 22.91 -107.50 -2.46 -1.22 16 16 C -0.21 -3.84 11.03 28.83 0.32 -3.52 16 17 C -0.12 -2.38 9.79 -38.61 -0.38 -2.76 16 18 C -0.02 -0.38 5.97 -105.39 -0.63 -1.01 16 19 C -0.19 -4.14 5.59 -103.60 -0.58 -4.72 16 20 C 0.14 2.31 6.43 36.01 0.23 2.54 16 21 O -0.57 -9.03 12.05 -35.23 -0.42 -9.46 16 22 H 0.07 1.21 6.35 -51.93 -0.33 0.88 16 23 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 1.02 8.04 -51.93 -0.42 0.61 16 26 H 0.06 1.00 6.07 -51.93 -0.32 0.69 16 27 H 0.11 2.56 4.73 -52.49 -0.25 2.31 16 28 H 0.29 6.76 8.30 -40.82 -0.34 6.42 16 29 H 0.15 2.15 8.06 -52.49 -0.42 1.73 16 30 H 0.13 2.05 7.51 -52.49 -0.39 1.65 16 31 H 0.04 0.62 5.93 -51.93 -0.31 0.32 16 32 H 0.03 0.54 7.22 -51.93 -0.38 0.16 16 33 H 0.36 3.73 9.12 45.56 0.42 4.15 16 LS Contribution 282.00 15.07 4.25 4.25 Total: -1.00 -28.87 282.00 -7.72 -36.59 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -2.83 Total: 5.44 kcal Atomic # 6 Polarization: -29.22 SS G_CDS: -2.85 Total: -32.07 kcal Atomic # 7 Polarization: -20.60 SS G_CDS: 0.77 Total: -19.83 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -0.42 Total: -9.46 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.17 Total: 16.30 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -2.46 Total: -1.22 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.87 -7.72 -36.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396292855.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.540 kcal (2) G-P(sol) polarization free energy of solvation -28.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds