Wall clock time and date at job start Mon Mar 30 2020 06:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.46855 * 2 1 4 4 C 1.37924 * 119.61744 * 264.99790 * 3 2 1 5 5 C 1.40380 * 119.87906 * 180.02562 * 4 3 2 6 6 C 1.40932 * 120.11056 * 180.02562 * 5 4 3 7 7 H 1.08001 * 119.99672 * 149.97920 * 6 5 4 8 8 C 1.39921 * 120.00482 * 329.97992 * 6 5 4 9 9 N 1.30867 * 120.00322 * 161.76048 * 8 6 5 10 10 Si 1.86809 * 119.99875 * 341.76139 * 8 6 5 11 11 H 1.48500 * 109.47053 * 95.40626 * 10 8 6 12 12 H 1.48493 * 109.47402 * 215.40765 * 10 8 6 13 13 H 1.48496 * 109.46928 * 335.41182 * 10 8 6 14 14 C 1.42184 * 119.77110 * 0.02562 * 5 4 3 15 15 S 1.75899 * 130.53747 * 179.97438 * 14 5 4 16 16 C 1.75313 * 92.16986 * 179.83597 * 15 14 5 17 17 C 1.31861 * 111.33085 * 0.34228 * 16 15 14 18 18 C 1.39392 * 119.69673 * 359.97438 * 14 5 4 19 19 C 1.37750 * 119.61576 * 85.02237 * 3 2 1 20 20 C 1.50699 * 119.55260 * 359.97421 * 19 3 2 21 21 O 1.42902 * 109.47341 * 270.00526 * 20 19 3 22 22 H 1.09004 * 109.47251 * 299.99853 * 1 2 3 23 23 H 1.08999 * 109.47142 * 60.00270 * 1 2 3 24 24 H 1.09003 * 109.47004 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.46982 * 239.99808 * 2 1 3 26 26 H 1.08999 * 109.47142 * 119.99730 * 2 1 3 27 27 H 1.07999 * 120.06230 * 0.02562 * 4 3 2 28 28 H 0.97002 * 120.00030 * 179.97438 * 9 8 6 29 29 H 1.07999 * 124.33169 * 180.19895 * 16 15 14 30 30 H 1.08000 * 122.55617 * 179.85614 * 17 16 15 31 31 H 1.08998 * 109.46988 * 29.99954 * 20 19 3 32 32 H 1.09001 * 109.47430 * 150.00009 * 20 19 3 33 33 H 0.96697 * 114.00146 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3581 2.0287 -1.1945 5 6 2.8270 3.3518 -1.2008 6 6 3.1607 3.9778 -2.4186 7 1 3.0506 5.0470 -2.5240 8 6 3.6348 3.2142 -3.4910 9 7 3.6076 3.7028 -4.7047 10 14 4.3063 1.4972 -3.1901 11 1 3.2333 0.4978 -3.4248 12 1 5.4359 1.2378 -4.1184 13 1 4.7835 1.3910 -1.7879 14 6 2.9640 4.0582 0.0255 15 16 3.5155 5.6976 0.3451 16 6 3.2840 5.5099 2.0728 17 6 2.8361 4.3055 2.3686 18 6 2.6308 3.4307 1.2248 19 6 2.1612 2.0973 1.1930 20 6 1.7974 1.4067 2.4821 21 8 0.4171 1.6361 2.7724 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 2.2526 1.4877 -2.1232 28 1 3.9366 3.1736 -5.4481 29 1 3.4849 6.2811 2.8016 30 1 2.6325 3.9940 3.3825 31 1 1.9747 0.3358 2.3832 32 1 2.4098 1.8030 3.2921 33 1 0.1126 1.2194 3.5901 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396292855.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:22 Heat of formation + Delta-G solvation = -47.018990 kcal Electronic energy + Delta-G solvation = -17517.814217 eV Core-core repulsion = 14826.040285 eV Total energy + Delta-G solvation = -2691.773932 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.52256 -37.49860 -36.73527 -35.81220 -33.86961 -31.82494 -29.53529 -28.65566 -25.15937 -24.89839 -23.48902 -22.10658 -20.49688 -19.26974 -18.14853 -18.06556 -17.22355 -16.73739 -16.05832 -15.43305 -15.16861 -15.01676 -14.65633 -14.31871 -14.11480 -13.97618 -13.74194 -13.28125 -13.17020 -12.94320 -12.68592 -12.49183 -12.25575 -11.94359 -11.79146 -11.58075 -11.39792 -11.16078 -11.03931 -10.57385 -10.05887 -9.13831 -9.01384 -8.55462 -6.55283 0.10666 0.59605 0.97013 1.19550 1.32907 1.40440 1.46730 1.61627 2.07060 2.49099 3.24371 3.83631 3.96171 4.11403 4.22719 4.34448 4.42927 4.51363 4.57452 4.66301 4.71819 4.81488 4.92718 5.03491 5.07143 5.15014 5.21624 5.36037 5.45694 5.52352 5.59365 5.75206 6.02078 6.08625 6.29792 6.56507 6.68070 7.14656 8.05961 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.015687 B = 0.010887 C = 0.006969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.494457 B = 2571.254664 C = 4016.587035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.084 4.084 3 C -0.019 4.019 4 C -0.262 4.262 5 C 0.113 3.887 6 C -0.472 4.472 7 H 0.058 0.942 8 C 0.052 3.948 9 N -0.836 5.836 10 Si 0.965 3.035 11 H -0.253 1.253 12 H -0.274 1.274 13 H -0.255 1.255 14 C -0.238 4.238 15 S 0.027 5.973 16 C -0.188 4.188 17 C -0.130 4.130 18 C -0.035 4.035 19 C -0.187 4.187 20 C 0.142 3.858 21 O -0.582 6.582 22 H 0.068 0.932 23 H 0.032 0.968 24 H 0.076 0.924 25 H 0.060 0.940 26 H 0.092 0.908 27 H 0.102 0.898 28 H 0.297 0.703 29 H 0.197 0.803 30 H 0.164 0.836 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.616 -6.807 13.402 15.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.121 4.121 3 C -0.020 4.020 4 C -0.285 4.285 5 C 0.108 3.892 6 C -0.501 4.501 7 H 0.076 0.924 8 C -0.164 4.164 9 N -0.461 5.461 10 Si 0.787 3.213 11 H -0.178 1.178 12 H -0.200 1.200 13 H -0.179 1.179 14 C -0.353 4.353 15 S 0.290 5.710 16 C -0.321 4.321 17 C -0.161 4.161 18 C -0.043 4.043 19 C -0.190 4.190 20 C 0.065 3.935 21 O -0.390 6.390 22 H 0.087 0.913 23 H 0.051 0.949 24 H 0.095 0.905 25 H 0.079 0.921 26 H 0.110 0.890 27 H 0.119 0.881 28 H 0.108 0.892 29 H 0.214 0.786 30 H 0.181 0.819 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -1.015 -5.169 11.688 12.820 hybrid contribution -0.150 -1.323 0.427 1.398 sum -1.165 -6.492 12.115 13.793 Atomic orbital electron populations 1.21732 0.93759 1.02182 1.02075 1.20651 0.97210 0.91524 1.02739 1.19502 0.94421 0.96329 0.91794 1.20763 1.13877 0.96600 0.97230 1.17244 0.89573 0.91963 0.90439 1.19365 1.39587 0.95854 0.95287 0.92424 1.26837 0.92782 1.03465 0.93335 1.69722 1.34701 1.40977 1.00686 0.85481 0.78695 0.77402 0.79685 1.17781 1.20020 1.17914 1.22918 1.16105 0.99049 0.97180 1.83799 1.71625 1.12954 1.02630 1.25378 1.06680 1.01818 0.98269 1.21113 1.03003 0.93087 0.98924 1.19387 0.98851 0.94737 0.91344 1.19056 1.11830 0.93311 0.94832 1.20676 0.82281 0.97891 0.92608 1.86624 1.26145 1.78720 1.47487 0.91306 0.94868 0.90487 0.92103 0.88979 0.88061 0.89182 0.78639 0.81852 0.91712 0.92670 0.76219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.12 9.88 71.98 0.71 -3.40 16 2 C -0.08 -2.72 5.52 29.85 0.16 -2.55 16 3 C -0.02 -0.79 5.11 -20.05 -0.10 -0.89 16 4 C -0.26 -12.87 6.76 22.72 0.15 -12.71 16 5 C 0.11 6.08 5.12 -21.12 -0.11 5.97 16 6 C -0.47 -27.27 9.31 23.34 0.22 -27.05 16 7 H 0.06 3.60 8.01 -2.91 -0.02 3.58 16 8 C 0.05 2.85 5.40 85.24 0.46 3.31 16 9 N -0.84 -46.11 13.93 21.82 0.30 -45.81 16 10 Si 0.96 43.47 24.52 68.60 1.68 45.15 16 11 H -0.25 -10.65 6.71 99.48 0.67 -9.99 16 12 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 13 H -0.26 -11.92 6.87 99.48 0.68 -11.23 16 14 C -0.24 -11.74 6.36 23.53 0.15 -11.60 16 15 S 0.03 1.17 22.91 -56.49 -1.29 -0.13 16 16 C -0.19 -6.19 11.03 67.01 0.74 -5.45 16 17 C -0.13 -4.49 9.79 23.32 0.23 -4.26 16 18 C -0.03 -1.51 5.97 -20.36 -0.12 -1.63 16 19 C -0.19 -7.43 5.59 -19.20 -0.11 -7.53 16 20 C 0.14 4.04 6.43 71.24 0.46 4.50 16 21 O -0.58 -15.67 12.05 -148.98 -1.80 -17.47 16 22 H 0.07 2.06 6.35 -2.39 -0.02 2.05 16 23 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.06 1.94 8.04 -2.39 -0.02 1.92 16 26 H 0.09 2.44 6.07 -2.39 -0.01 2.42 16 27 H 0.10 4.95 4.73 -2.91 -0.01 4.94 16 28 H 0.30 14.63 8.30 -92.71 -0.77 13.86 16 29 H 0.20 4.62 8.06 -2.91 -0.02 4.60 16 30 H 0.16 4.38 7.51 -2.91 -0.02 4.36 16 31 H 0.06 1.56 5.93 -2.39 -0.01 1.55 16 32 H 0.06 1.37 7.22 -2.39 -0.02 1.35 16 33 H 0.39 5.86 9.12 -74.06 -0.68 5.19 16 Total: -1.00 -67.07 282.00 2.15 -64.92 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.41 Total: 16.64 kcal Atomic # 6 Polarization: -66.15 SS G_CDS: 2.84 Total: -63.31 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: 0.30 Total: -45.81 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -1.80 Total: -17.47 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.68 Total: 45.15 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -1.29 Total: -0.13 kcal Total: -67.07 2.15 -64.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396292855.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.904 kcal (2) G-P(sol) polarization free energy of solvation -67.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds