Wall clock time and date at job start Mon Mar 30 2020 06:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.47123 * 2 1 4 4 C 1.37928 * 120.05986 * 265.21792 * 3 2 1 5 5 C 1.37744 * 120.76699 * 180.24132 * 4 3 2 6 6 C 1.41398 * 120.90434 * 359.77169 * 5 4 3 7 7 C 1.45452 * 129.17086 * 179.97438 * 6 5 4 8 8 C 1.50700 * 122.55791 * 0.02562 * 7 6 5 9 9 O 1.42909 * 109.47069 * 179.97438 * 8 7 6 10 10 C 1.31866 * 114.88599 * 180.02562 * 7 6 5 11 11 S 1.75305 * 111.33049 * 0.02562 * 10 7 6 12 12 C 1.39390 * 118.98429 * 0.02562 * 6 5 4 13 13 C 1.40369 * 120.06006 * 84.99672 * 3 2 1 14 14 C 1.40929 * 120.11672 * 0.02804 * 13 3 2 15 15 H 1.08006 * 119.99856 * 323.05756 * 14 13 3 16 16 C 1.39930 * 120.00527 * 143.05957 * 14 13 3 17 17 N 1.30869 * 119.99493 * 332.13864 * 16 14 13 18 18 Si 1.86804 * 120.00013 * 152.13808 * 16 14 13 19 19 H 1.48504 * 109.46735 * 180.02562 * 18 16 14 20 20 H 1.48496 * 109.47124 * 299.99805 * 18 16 14 21 21 H 1.48490 * 109.46934 * 60.00184 * 18 16 14 22 22 H 1.08997 * 109.46936 * 299.99909 * 1 2 3 23 23 H 1.09000 * 109.47306 * 60.00077 * 1 2 3 24 24 H 1.08994 * 109.46911 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46936 * 240.00090 * 2 1 3 26 26 H 1.09000 * 109.47306 * 119.99923 * 2 1 3 27 27 H 1.08002 * 119.61410 * 0.04239 * 4 3 2 28 28 H 1.08002 * 119.55044 * 179.75922 * 5 4 3 29 29 H 1.08996 * 109.47478 * 299.99689 * 8 7 6 30 30 H 1.08995 * 109.47162 * 60.00142 * 8 7 6 31 31 H 0.96697 * 113.99988 * 179.97438 * 9 8 7 32 32 H 1.07996 * 124.33448 * 179.97438 * 10 7 6 33 33 H 0.96995 * 120.00525 * 357.64314 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3565 2.0390 -1.1896 5 6 2.8216 3.3355 -1.2061 6 6 2.9744 4.0676 -0.0061 7 6 3.4450 5.4305 0.1850 8 6 3.8646 6.3121 -0.9630 9 8 4.2744 7.5856 -0.4605 10 6 3.4765 5.8360 1.4394 11 16 2.9280 4.5779 2.5301 12 6 2.6469 3.4575 1.2036 13 6 2.1669 2.1191 1.2103 14 6 1.8333 1.4936 2.4283 15 1 0.9919 0.8181 2.4758 16 6 2.5920 1.7478 3.5763 17 7 3.8531 2.0799 3.4667 18 14 1.8047 1.6132 5.2649 19 1 2.8133 1.9300 6.3079 20 1 0.6748 2.5718 5.3622 21 1 1.3002 0.2313 5.4671 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.2473 1.4992 -2.1187 28 1 3.0733 3.7991 -2.1486 29 1 4.6948 5.8465 -1.4941 30 1 3.0251 6.4442 -1.6454 31 1 4.5589 8.2058 -1.1457 32 1 3.7995 6.8171 1.7545 33 1 4.2708 2.1165 2.5921 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396293511.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:57 Heat of formation + Delta-G solvation = -37.533766 kcal Electronic energy + Delta-G solvation = -17379.917231 eV Core-core repulsion = 14688.554610 eV Total energy + Delta-G solvation = -2691.362621 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.54964 -36.96943 -34.90465 -33.76264 -31.79557 -29.55279 -27.67544 -26.51527 -24.92435 -22.86783 -21.31527 -20.26470 -18.82393 -17.81568 -17.03543 -15.90769 -14.96372 -14.66417 -14.39804 -14.02420 -13.89801 -13.78629 -12.92843 -12.64521 -12.37510 -12.25040 -11.76277 -11.59435 -11.50780 -11.21852 -11.02519 -10.59773 -10.42926 -10.23424 -10.12182 -10.02080 -9.68515 -9.55805 -9.39411 -8.76033 -8.23984 -7.41268 -7.19625 -6.38710 -4.52796 1.90841 2.64406 2.80538 3.10954 3.16928 3.34360 3.35938 3.40585 3.99980 4.43956 4.51435 5.19352 5.51555 5.64665 5.78080 5.83487 5.87115 5.90666 6.15323 6.23517 6.33663 6.48819 6.53774 6.71875 6.81098 6.83426 6.98121 7.15210 7.28489 7.39913 7.60024 7.73153 7.80829 7.83522 8.00981 8.15297 8.62258 8.74731 9.98305 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.017337 B = 0.009734 C = 0.006600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.651576 B = 2875.697805 C = 4241.633827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.054 4.054 3 C -0.189 4.189 4 C -0.071 4.071 5 C -0.217 4.217 6 C -0.036 4.036 7 C -0.119 4.119 8 C 0.143 3.857 9 O -0.572 6.572 10 C -0.199 4.199 11 S 0.097 5.903 12 C -0.204 4.204 13 C 0.135 3.865 14 C -0.524 4.524 15 H 0.085 0.915 16 C 0.032 3.968 17 N -0.766 5.766 18 Si 1.053 2.947 19 H -0.271 1.271 20 H -0.271 1.271 21 H -0.275 1.275 22 H 0.057 0.943 23 H 0.043 0.957 24 H 0.039 0.961 25 H 0.044 0.956 26 H 0.067 0.933 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.375 0.625 32 H 0.153 0.847 33 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.164 3.149 -4.466 5.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.091 4.091 3 C -0.193 4.193 4 C -0.091 4.091 5 C -0.239 4.239 6 C -0.043 4.043 7 C -0.133 4.133 8 C 0.064 3.936 9 O -0.376 6.376 10 C -0.334 4.334 11 S 0.364 5.636 12 C -0.320 4.320 13 C 0.129 3.871 14 C -0.551 4.551 15 H 0.103 0.897 16 C -0.192 4.192 17 N -0.388 5.388 18 Si 0.876 3.124 19 H -0.195 1.195 20 H -0.197 1.197 21 H -0.201 1.201 22 H 0.076 0.924 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.085 0.915 27 H 0.112 0.888 28 H 0.110 0.890 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.221 0.779 32 H 0.170 0.830 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.105 3.025 -0.625 3.280 hybrid contribution 0.091 0.275 -3.887 3.898 sum -1.015 3.300 -4.512 5.681 Atomic orbital electron populations 1.21727 0.96851 0.99674 1.01595 1.20058 0.94468 0.93979 1.00614 1.19537 1.11712 0.95561 0.92520 1.20260 0.98490 0.94119 0.96222 1.20051 1.13734 0.95772 0.94301 1.18634 1.00607 0.91165 0.93906 1.19402 1.05874 0.93960 0.94101 1.20489 0.97438 0.82293 0.93405 1.86467 1.87963 1.25162 1.38045 1.25071 1.07053 1.03783 0.97488 1.84150 1.68584 1.02239 1.08646 1.22638 1.16623 0.98640 0.94099 1.16781 0.89436 0.87753 0.93169 1.20391 1.15173 1.26010 0.93555 0.89710 1.26900 0.94265 0.92654 1.05379 1.70479 1.10261 1.26944 1.31083 0.83765 0.76682 0.77994 0.73920 1.19549 1.19661 1.20071 0.92440 0.93788 0.94161 0.93746 0.91484 0.88775 0.89012 0.92980 0.92986 0.77892 0.82986 0.88997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.81 37.16 0.36 -2.16 16 2 C -0.05 -1.08 5.44 -27.88 -0.15 -1.23 16 3 C -0.19 -4.37 5.19 -103.93 -0.54 -4.91 16 4 C -0.07 -1.55 9.60 -39.88 -0.38 -1.93 16 5 C -0.22 -4.75 9.86 -38.56 -0.38 -5.13 16 6 C -0.04 -0.84 6.01 -105.40 -0.63 -1.48 16 7 C -0.12 -2.53 5.97 -103.65 -0.62 -3.15 16 8 C 0.14 2.38 7.33 36.01 0.26 2.64 16 9 O -0.57 -8.57 12.48 -35.23 -0.44 -9.01 16 10 C -0.20 -4.30 10.28 28.83 0.30 -4.00 16 11 S 0.10 2.29 19.88 -107.50 -2.14 0.15 16 12 C -0.20 -5.17 5.29 -37.64 -0.20 -5.37 16 13 C 0.13 3.44 5.01 -106.56 -0.53 2.90 16 14 C -0.52 -13.27 7.66 -37.93 -0.29 -13.56 16 15 H 0.08 2.09 6.43 -52.48 -0.34 1.75 16 16 C 0.03 0.79 3.98 -17.33 -0.07 0.72 16 17 N -0.77 -19.92 11.60 55.55 0.64 -19.28 16 18 Si 1.05 21.69 30.01 -169.99 -5.10 16.59 16 19 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 20 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 21 H -0.28 -5.34 7.11 56.52 0.40 -4.93 16 22 H 0.06 1.11 7.11 -51.93 -0.37 0.74 16 23 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.04 0.80 8.05 -51.93 -0.42 0.38 16 26 H 0.07 1.42 7.21 -51.93 -0.37 1.04 16 27 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 28 H 0.09 1.75 8.04 -52.49 -0.42 1.33 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.38 3.42 9.12 45.56 0.42 3.83 16 32 H 0.15 3.00 7.41 -52.49 -0.39 2.61 16 33 H 0.30 8.12 7.12 -40.82 -0.29 7.83 16 LS Contribution 287.84 15.07 4.34 4.34 Total: -1.00 -28.21 287.84 -8.67 -36.87 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -3.09 Total: 7.00 kcal Atomic # 6 Polarization: -33.79 SS G_CDS: -2.87 Total: -36.66 kcal Atomic # 7 Polarization: -19.92 SS G_CDS: 0.64 Total: -19.28 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: -0.44 Total: -9.01 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.10 Total: 16.59 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -2.14 Total: 0.15 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.21 -8.67 -36.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396293511.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.661 kcal (2) G-P(sol) polarization free energy of solvation -28.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds