Wall clock time and date at job start Mon Mar 30 2020 06:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.47123 * 2 1 4 4 C 1.37928 * 120.05986 * 265.21792 * 3 2 1 5 5 C 1.37744 * 120.76699 * 180.24132 * 4 3 2 6 6 C 1.41398 * 120.90434 * 359.77169 * 5 4 3 7 7 C 1.45452 * 129.17086 * 179.97438 * 6 5 4 8 8 C 1.50700 * 122.55791 * 0.02562 * 7 6 5 9 9 O 1.42909 * 109.47069 * 179.97438 * 8 7 6 10 10 C 1.31866 * 114.88599 * 180.02562 * 7 6 5 11 11 S 1.75305 * 111.33049 * 0.02562 * 10 7 6 12 12 C 1.39390 * 118.98429 * 0.02562 * 6 5 4 13 13 C 1.40369 * 120.06006 * 84.99672 * 3 2 1 14 14 C 1.40929 * 120.11672 * 0.02804 * 13 3 2 15 15 H 1.08006 * 119.99856 * 323.05756 * 14 13 3 16 16 C 1.39930 * 120.00527 * 143.05957 * 14 13 3 17 17 N 1.30869 * 119.99493 * 332.13864 * 16 14 13 18 18 Si 1.86804 * 120.00013 * 152.13808 * 16 14 13 19 19 H 1.48504 * 109.46735 * 180.02562 * 18 16 14 20 20 H 1.48496 * 109.47124 * 299.99805 * 18 16 14 21 21 H 1.48490 * 109.46934 * 60.00184 * 18 16 14 22 22 H 1.08997 * 109.46936 * 299.99909 * 1 2 3 23 23 H 1.09000 * 109.47306 * 60.00077 * 1 2 3 24 24 H 1.08994 * 109.46911 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46936 * 240.00090 * 2 1 3 26 26 H 1.09000 * 109.47306 * 119.99923 * 2 1 3 27 27 H 1.08002 * 119.61410 * 0.04239 * 4 3 2 28 28 H 1.08002 * 119.55044 * 179.75922 * 5 4 3 29 29 H 1.08996 * 109.47478 * 299.99689 * 8 7 6 30 30 H 1.08995 * 109.47162 * 60.00142 * 8 7 6 31 31 H 0.96697 * 113.99988 * 179.97438 * 9 8 7 32 32 H 1.07996 * 124.33448 * 179.97438 * 10 7 6 33 33 H 0.96995 * 120.00525 * 357.64314 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3565 2.0390 -1.1896 5 6 2.8216 3.3355 -1.2061 6 6 2.9744 4.0676 -0.0061 7 6 3.4450 5.4305 0.1850 8 6 3.8646 6.3121 -0.9630 9 8 4.2744 7.5856 -0.4605 10 6 3.4765 5.8360 1.4394 11 16 2.9280 4.5779 2.5301 12 6 2.6469 3.4575 1.2036 13 6 2.1669 2.1191 1.2103 14 6 1.8333 1.4936 2.4283 15 1 0.9919 0.8181 2.4758 16 6 2.5920 1.7478 3.5763 17 7 3.8531 2.0799 3.4667 18 14 1.8047 1.6132 5.2649 19 1 2.8133 1.9300 6.3079 20 1 0.6748 2.5718 5.3622 21 1 1.3002 0.2313 5.4671 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.2473 1.4992 -2.1187 28 1 3.0733 3.7991 -2.1486 29 1 4.6948 5.8465 -1.4941 30 1 3.0251 6.4442 -1.6454 31 1 4.5589 8.2058 -1.1457 32 1 3.7995 6.8171 1.7545 33 1 4.2708 2.1165 2.5921 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396293511.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:56 Heat of formation + Delta-G solvation = -53.893442 kcal Electronic energy + Delta-G solvation = -17380.626640 eV Core-core repulsion = 14688.554610 eV Total energy + Delta-G solvation = -2692.072030 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.25411 -38.35524 -36.43824 -35.52717 -33.38494 -31.33603 -29.30203 -28.03556 -26.66157 -24.47788 -23.08247 -21.90830 -20.54453 -19.42475 -18.46483 -17.54232 -16.65921 -16.11369 -15.91997 -15.64844 -15.50811 -15.36810 -14.64348 -14.24261 -14.04752 -13.87463 -13.45273 -13.16200 -13.04378 -12.81416 -12.63548 -12.22691 -12.04185 -11.85270 -11.63292 -11.57440 -11.30371 -11.18924 -11.06372 -10.56681 -9.99602 -9.28889 -8.98924 -8.18798 -6.42077 0.17132 0.84937 1.07163 1.44387 1.47822 1.60183 1.70312 1.73405 2.30332 2.70567 3.27564 3.39228 3.98632 4.21734 4.29638 4.34632 4.49887 4.56104 4.56759 4.66218 4.74005 4.89542 4.99122 5.10369 5.15740 5.23587 5.40843 5.46693 5.53686 5.63703 5.81622 5.88786 6.01528 6.18582 6.37588 6.78506 6.91460 6.92740 8.05004 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.017337 B = 0.009734 C = 0.006600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.651576 B = 2875.697805 C = 4241.633827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.053 4.053 3 C -0.196 4.196 4 C -0.081 4.081 5 C -0.206 4.206 6 C -0.060 4.060 7 C -0.120 4.120 8 C 0.150 3.850 9 O -0.585 6.585 10 C -0.203 4.203 11 S 0.054 5.946 12 C -0.230 4.230 13 C 0.103 3.897 14 C -0.549 4.549 15 H 0.080 0.920 16 C 0.004 3.996 17 N -0.787 5.787 18 Si 1.089 2.911 19 H -0.271 1.271 20 H -0.267 1.267 21 H -0.254 1.254 22 H 0.034 0.966 23 H 0.052 0.948 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.047 0.953 27 H 0.130 0.870 28 H 0.127 0.873 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.402 0.598 32 H 0.169 0.831 33 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.492 3.511 -6.559 7.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.090 4.090 3 C -0.201 4.201 4 C -0.101 4.101 5 C -0.227 4.227 6 C -0.068 4.068 7 C -0.134 4.134 8 C 0.071 3.929 9 O -0.394 6.394 10 C -0.337 4.337 11 S 0.320 5.680 12 C -0.346 4.346 13 C 0.097 3.903 14 C -0.577 4.577 15 H 0.098 0.902 16 C -0.215 4.215 17 N -0.410 5.410 18 Si 0.908 3.092 19 H -0.195 1.195 20 H -0.192 1.192 21 H -0.179 1.179 22 H 0.053 0.947 23 H 0.072 0.928 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.066 0.934 27 H 0.147 0.853 28 H 0.144 0.856 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.253 0.747 32 H 0.186 0.814 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.430 3.402 -2.755 4.605 hybrid contribution 0.202 0.218 -3.460 3.472 sum -1.227 3.619 -6.215 7.296 Atomic orbital electron populations 1.21638 0.95138 1.01346 1.00899 1.20093 0.95904 0.92220 1.00816 1.20052 1.10573 0.96950 0.92477 1.20678 0.97869 0.94451 0.97064 1.20547 1.11371 0.95725 0.95073 1.19120 1.01139 0.92542 0.94000 1.19867 1.04228 0.93705 0.95577 1.20429 0.98741 0.82418 0.91356 1.86397 1.88107 1.25060 1.39839 1.25177 1.07737 1.03643 0.97143 1.84107 1.69911 1.03724 1.10259 1.22944 1.17447 0.99055 0.95123 1.17182 0.90471 0.88358 0.94272 1.20452 1.15707 1.27117 0.94433 0.90182 1.27931 0.93928 0.91528 1.08080 1.70593 1.11066 1.29845 1.29470 0.83336 0.76111 0.79144 0.70640 1.19531 1.19187 1.17863 0.94683 0.92848 0.91320 0.91280 0.93425 0.85260 0.85558 0.91295 0.90975 0.74714 0.81368 0.91169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.55 9.81 71.98 0.71 -3.85 16 2 C -0.05 -2.06 5.44 29.85 0.16 -1.90 16 3 C -0.20 -8.97 5.19 -19.42 -0.10 -9.07 16 4 C -0.08 -3.33 9.60 22.08 0.21 -3.12 16 5 C -0.21 -8.48 9.86 22.93 0.23 -8.25 16 6 C -0.06 -2.79 6.01 -20.37 -0.12 -2.92 16 7 C -0.12 -4.93 5.97 -18.82 -0.11 -5.04 16 8 C 0.15 4.46 7.33 71.24 0.52 4.98 16 9 O -0.58 -15.57 12.48 -148.98 -1.86 -17.43 16 10 C -0.20 -8.68 10.28 67.00 0.69 -7.99 16 11 S 0.05 2.62 19.88 -56.49 -1.12 1.50 16 12 C -0.23 -11.88 5.29 23.53 0.12 -11.75 16 13 C 0.10 5.37 5.01 -21.12 -0.11 5.27 16 14 C -0.55 -28.80 7.66 23.34 0.18 -28.62 16 15 H 0.08 4.11 6.43 -2.91 -0.02 4.09 16 16 C 0.00 0.19 3.98 85.25 0.34 0.53 16 17 N -0.79 -42.74 11.60 21.83 0.25 -42.49 16 18 Si 1.09 44.69 30.01 68.60 2.06 46.75 16 19 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 20 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 21 H -0.25 -9.47 7.11 99.48 0.71 -8.77 16 22 H 0.03 1.33 7.11 -2.39 -0.02 1.32 16 23 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.07 2.32 8.05 -2.39 -0.02 2.30 16 26 H 0.05 2.03 7.21 -2.39 -0.02 2.01 16 27 H 0.13 4.33 8.06 -2.91 -0.02 4.31 16 28 H 0.13 4.26 8.04 -2.91 -0.02 4.24 16 29 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.40 5.75 9.12 -74.06 -0.68 5.08 16 32 H 0.17 6.50 7.41 -2.91 -0.02 6.48 16 33 H 0.28 15.96 7.12 -92.71 -0.66 15.30 16 Total: -1.00 -62.57 287.84 2.62 -59.96 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: 0.57 Total: 23.43 kcal Atomic # 6 Polarization: -74.44 SS G_CDS: 2.72 Total: -71.72 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: 0.25 Total: -42.49 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -1.86 Total: -17.43 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.06 Total: 46.75 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -1.12 Total: 1.50 kcal Total: -62.57 2.62 -59.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396293511.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.065 kcal (2) G-P(sol) polarization free energy of solvation -62.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds