Wall clock time and date at job start Mon Mar 30 2020 06:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50696 * 109.47030 * 2 1 4 4 C 1.35132 * 119.48555 * 265.37625 * 3 2 1 5 5 C 1.41207 * 120.45109 * 180.25899 * 4 3 2 6 6 C 1.40829 * 120.26034 * 179.67161 * 5 4 3 7 7 H 1.08003 * 120.00151 * 154.61348 * 6 5 4 8 8 C 1.39820 * 119.99682 * 334.33829 * 6 5 4 9 9 N 1.30965 * 119.99879 * 342.76102 * 8 6 5 10 10 Si 1.86803 * 119.99804 * 162.76244 * 8 6 5 11 11 H 1.48498 * 109.46948 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.46923 * 119.99882 * 10 8 6 13 13 H 1.48494 * 109.46958 * 239.99818 * 10 8 6 14 14 C 1.40985 * 119.48597 * 359.40143 * 5 4 3 15 15 O 1.35658 * 120.08573 * 180.25197 * 14 5 4 16 16 C 1.42896 * 117.00211 * 90.00170 * 15 14 5 17 17 C 1.39570 * 119.83002 * 0.27446 * 14 5 4 18 18 S 1.76053 * 130.43443 * 180.02562 * 17 14 5 19 19 C 1.75479 * 91.52733 * 180.02562 * 18 17 14 20 20 C 1.32497 * 110.78325 * 0.02562 * 19 18 17 21 21 C 1.39984 * 120.14360 * 0.02562 * 17 14 5 22 22 H 1.08995 * 109.47138 * 299.99592 * 1 2 3 23 23 H 1.09002 * 109.47459 * 60.00237 * 1 2 3 24 24 H 1.09012 * 109.46906 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47649 * 239.99670 * 2 1 3 26 26 H 1.09002 * 109.47459 * 119.99762 * 2 1 3 27 27 H 1.08004 * 119.77515 * 359.93263 * 4 3 2 28 28 H 0.97001 * 119.99489 * 179.97438 * 9 8 6 29 29 H 1.08993 * 109.47558 * 180.02562 * 16 15 14 30 30 H 1.09010 * 109.46888 * 300.00251 * 16 15 14 31 31 H 1.09002 * 109.47171 * 59.99313 * 16 15 14 32 32 H 1.08002 * 124.61028 * 179.97438 * 19 18 17 33 33 H 1.07999 * 122.06999 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3433 2.0163 -1.1725 5 6 2.8209 3.3449 -1.1957 6 6 3.1505 3.9593 -2.4194 7 1 3.1161 5.0349 -2.5101 8 6 3.5277 3.1769 -3.5151 9 7 3.9017 1.9348 -3.3350 10 14 3.4981 3.9035 -5.2358 11 1 3.0408 5.3147 -5.1694 12 1 4.8630 3.8518 -5.8184 13 1 2.5665 3.1212 -6.0874 14 6 2.9599 4.0537 0.0150 15 8 3.4127 5.3324 0.0064 16 6 2.4334 6.3667 -0.1080 17 6 2.6308 3.4362 1.2227 18 16 2.6944 4.0478 2.8724 19 6 2.0994 2.5249 3.5097 20 6 1.8845 1.6576 2.5314 21 6 2.1643 2.1164 1.2332 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.2309 1.4705 -2.0977 28 1 4.1630 1.3920 -4.0953 29 1 2.9282 7.3379 -0.1030 30 1 1.8831 6.2445 -1.0410 31 1 1.7416 6.3066 0.7322 32 1 1.9319 2.3219 4.5572 33 1 1.5156 0.6603 2.7199 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396294903.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:22 Heat of formation + Delta-G solvation = -29.962745 kcal Electronic energy + Delta-G solvation = -17491.528445 eV Core-core repulsion = 14800.494128 eV Total energy + Delta-G solvation = -2691.034317 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.61589 -38.59226 -36.62755 -35.16265 -33.76220 -30.56404 -29.77279 -27.83782 -26.77025 -24.23891 -24.13009 -21.70210 -21.28860 -19.32243 -18.30129 -17.50093 -16.93073 -16.52659 -16.14604 -15.42849 -15.31088 -14.99389 -14.67846 -14.40846 -14.02111 -13.91237 -13.46825 -13.14166 -13.06463 -12.84642 -12.62848 -12.55862 -12.40686 -12.04199 -11.89422 -11.56485 -11.39915 -11.25266 -10.88648 -10.55956 -9.96538 -9.15540 -8.83743 -8.27870 -6.36616 0.19719 0.77491 0.97242 1.30343 1.37291 1.42970 1.52231 1.79134 2.15546 2.63768 3.17198 3.60840 4.11043 4.26269 4.33303 4.47499 4.58942 4.62078 4.66379 4.72259 4.82212 4.85448 4.96008 5.05105 5.12600 5.16579 5.27068 5.30125 5.43835 5.50904 5.75574 5.90098 6.05525 6.14073 6.40827 6.66147 6.73470 7.18007 8.16115 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.019259 B = 0.008552 C = 0.006309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.523929 B = 3273.173283 C = 4437.295816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.076 4.076 3 C -0.040 4.040 4 C -0.153 4.153 5 C 0.090 3.910 6 C -0.453 4.453 7 H 0.079 0.921 8 C 0.036 3.964 9 N -0.802 5.802 10 Si 0.986 3.014 11 H -0.259 1.259 12 H -0.264 1.264 13 H -0.257 1.257 14 C -0.059 4.059 15 O -0.338 6.338 16 C 0.029 3.971 17 C -0.108 4.108 18 S 0.022 5.978 19 C -0.250 4.250 20 C -0.084 4.084 21 C -0.199 4.199 22 H 0.052 0.948 23 H 0.041 0.959 24 H 0.079 0.921 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.118 0.882 28 H 0.296 0.704 29 H 0.104 0.896 30 H 0.032 0.968 31 H 0.032 0.968 32 H 0.186 0.814 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.047 -1.586 3.521 6.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.113 4.113 3 C -0.043 4.043 4 C -0.173 4.173 5 C 0.084 3.916 6 C -0.481 4.481 7 H 0.097 0.903 8 C -0.182 4.182 9 N -0.426 5.426 10 Si 0.805 3.195 11 H -0.183 1.183 12 H -0.188 1.188 13 H -0.181 1.181 14 C -0.110 4.110 15 O -0.255 6.255 16 C -0.066 4.066 17 C -0.224 4.224 18 S 0.283 5.717 19 C -0.382 4.382 20 C -0.113 4.113 21 C -0.205 4.205 22 H 0.071 0.929 23 H 0.060 0.940 24 H 0.097 0.903 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.136 0.864 28 H 0.107 0.893 29 H 0.123 0.877 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.203 0.797 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.377 -0.444 4.178 6.068 hybrid contribution -0.326 -0.801 -1.424 1.666 sum -4.703 -1.245 2.754 5.591 Atomic orbital electron populations 1.21649 0.93762 1.02271 1.01428 1.20490 0.96938 0.91542 1.02341 1.19616 0.97481 0.96177 0.90978 1.20722 1.03623 0.95713 0.97240 1.18100 0.88763 0.92813 0.91875 1.19712 1.38138 0.95357 0.94894 0.90303 1.26857 0.91216 0.94748 1.05329 1.69905 1.28149 1.09127 1.35422 0.85097 0.79340 0.79696 0.75340 1.18253 1.18846 1.18087 1.18107 1.16760 0.86070 0.90094 1.85943 1.33356 1.12540 1.93629 1.22999 0.93113 0.91254 0.99242 1.22949 1.04217 0.98855 0.96364 1.83567 1.72611 1.17932 0.97614 1.25061 1.13249 0.96425 1.03485 1.19952 1.00477 1.00808 0.90108 1.17974 1.14135 0.93871 0.94554 0.92854 0.93994 0.90262 0.91815 0.90419 0.86418 0.89289 0.87727 0.94966 0.94888 0.79724 0.82993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.90 9.89 71.98 0.71 -3.19 16 2 C -0.08 -2.61 5.76 29.84 0.17 -2.44 16 3 C -0.04 -1.79 5.16 -19.60 -0.10 -1.90 16 4 C -0.15 -7.76 8.15 22.28 0.18 -7.58 16 5 C 0.09 4.89 5.57 -21.24 -0.12 4.78 16 6 C -0.45 -23.94 8.68 23.29 0.20 -23.74 16 7 H 0.08 4.13 6.99 -2.91 -0.02 4.11 16 8 C 0.04 1.75 5.14 85.21 0.44 2.19 16 9 N -0.80 -39.47 10.99 21.81 0.24 -39.23 16 10 Si 0.99 36.28 29.59 68.60 2.03 38.31 16 11 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 12 H -0.26 -9.35 7.11 99.48 0.71 -8.65 16 13 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 14 C -0.06 -3.10 5.78 23.26 0.13 -2.97 16 15 O -0.34 -16.90 9.68 -89.74 -0.87 -17.77 16 16 C 0.03 1.16 10.93 113.37 1.24 2.40 16 17 C -0.11 -5.26 6.42 23.01 0.15 -5.11 16 18 S 0.02 0.89 23.27 -56.49 -1.31 -0.42 16 19 C -0.25 -8.50 11.09 66.68 0.74 -7.76 16 20 C -0.08 -3.07 9.56 21.69 0.21 -2.86 16 21 C -0.20 -8.92 5.84 -21.32 -0.12 -9.05 16 22 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.04 1.30 8.14 -2.39 -0.02 1.29 16 24 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 25 H 0.06 2.20 8.00 -2.39 -0.02 2.18 16 26 H 0.08 2.39 7.34 -2.39 -0.02 2.37 16 27 H 0.12 6.03 6.16 -2.91 -0.02 6.01 16 28 H 0.30 12.90 8.30 -92.71 -0.77 12.13 16 29 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 30 H 0.03 1.30 7.68 -2.38 -0.02 1.28 16 31 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.19 4.77 8.06 -2.91 -0.02 4.75 16 33 H 0.15 4.51 7.46 -2.91 -0.02 4.49 16 Total: -1.00 -60.40 293.52 5.03 -55.37 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 1.12 Total: 20.96 kcal Atomic # 6 Polarization: -61.05 SS G_CDS: 3.83 Total: -57.22 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.24 Total: -39.23 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -0.87 Total: -17.77 kcal Atomic # 14 Polarization: 36.28 SS G_CDS: 2.03 Total: 38.31 kcal Atomic # 16 Polarization: 0.89 SS G_CDS: -1.31 Total: -0.42 kcal Total: -60.40 5.03 -55.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396294903.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.406 kcal (2) G-P(sol) polarization free energy of solvation -60.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds