Wall clock time and date at job start Mon Mar 30 2020 06:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47165 * 2 1 4 4 C 1.32633 * 124.67170 * 89.99346 * 3 2 1 5 5 C 1.40103 * 115.79960 * 180.02562 * 4 3 2 6 6 C 1.39592 * 112.70878 * 0.02562 * 5 4 3 7 7 C 1.39820 * 120.17699 * 180.02562 * 6 5 4 8 8 C 1.37833 * 121.56636 * 0.02562 * 7 6 5 9 9 C 1.38311 * 121.01226 * 359.97438 * 8 7 6 10 10 O 1.35717 * 120.01366 * 180.02562 * 9 8 7 11 11 C 1.42904 * 117.00301 * 0.02562 * 10 9 8 12 12 C 1.40905 * 119.97182 * 359.97438 * 9 8 7 13 13 C 1.40415 * 120.42988 * 180.02562 * 12 9 8 14 14 H 1.07991 * 119.99789 * 39.61637 * 13 12 9 15 15 C 1.39972 * 119.99872 * 219.61069 * 13 12 9 16 16 N 1.30900 * 120.00119 * 20.00252 * 15 13 12 17 17 Si 1.86797 * 120.00183 * 199.99564 * 15 13 12 18 18 H 1.48510 * 109.47085 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47350 * 120.00440 * 17 15 13 20 20 H 1.48504 * 109.47484 * 240.00575 * 17 15 13 21 21 S 1.75507 * 124.66541 * 269.69891 * 3 2 1 22 22 H 1.09001 * 109.46818 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46965 * 300.00355 * 1 2 3 24 24 H 1.08999 * 109.46997 * 60.00257 * 1 2 3 25 25 H 1.09001 * 109.47576 * 119.99264 * 2 1 3 26 26 H 1.08994 * 109.47685 * 239.99634 * 2 1 3 27 27 H 1.07993 * 122.10128 * 359.97438 * 4 3 2 28 28 H 1.07992 * 119.22093 * 179.97438 * 7 6 5 29 29 H 1.08000 * 119.49488 * 180.02562 * 8 7 6 30 30 H 1.09000 * 109.46901 * 300.00089 * 11 10 9 31 31 H 1.09002 * 109.47098 * 59.99900 * 11 10 9 32 32 H 1.09002 * 109.47253 * 179.97438 * 11 10 9 33 33 H 0.96993 * 119.99951 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2837 2.1322 1.0908 5 6 2.7447 3.4375 0.8747 6 6 2.8551 3.7525 -0.4807 7 6 3.3023 5.0175 -0.8741 8 6 3.6444 5.9814 0.0499 9 6 3.5567 5.7305 1.4072 10 8 3.8983 6.6945 2.2993 11 6 4.3396 7.9449 1.7662 12 6 3.1114 4.4739 1.8634 13 6 3.0181 4.2089 3.2392 14 1 2.6561 4.9716 3.9126 15 6 3.3943 2.9563 3.7377 16 7 4.1796 2.1807 3.0340 17 14 2.7757 2.3913 5.4073 18 1 1.9091 3.4438 5.9962 19 1 1.9938 1.1390 5.2477 20 1 3.9319 2.1419 6.3052 21 16 2.3723 2.3594 -1.4435 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 2.1413 1.7308 2.0832 28 1 3.3823 5.2446 -1.9268 29 1 3.9855 6.9477 -0.2912 30 1 5.2266 7.7856 1.1530 31 1 3.5483 8.3787 1.1548 32 1 4.5800 8.6240 2.5842 33 1 4.4406 1.3128 3.3797 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396295933.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:47 Heat of formation + Delta-G solvation = -8.580420 kcal Electronic energy + Delta-G solvation = -17359.095673 eV Core-core repulsion = 14668.988563 eV Total energy + Delta-G solvation = -2690.107110 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.75861 -37.03776 -34.59660 -33.81394 -31.58038 -29.98726 -27.29657 -26.55953 -25.09708 -23.27430 -21.51067 -20.61054 -18.94105 -17.69238 -16.44097 -15.70322 -15.31466 -14.82765 -14.64555 -14.45427 -13.72875 -13.32176 -13.13561 -12.74756 -12.47706 -12.14084 -11.92222 -11.52574 -11.41269 -11.32286 -11.12413 -10.85832 -10.67727 -10.64910 -10.52094 -10.24761 -9.93994 -9.40814 -9.29643 -9.02163 -7.93706 -7.00592 -6.98605 -6.39847 -4.35994 1.91209 2.63123 2.72377 3.02663 3.04293 3.09149 3.14470 3.66626 3.85780 4.41763 4.49710 5.30676 5.43380 5.54099 5.72668 5.78713 5.80221 5.90627 6.03736 6.13136 6.17979 6.20626 6.36067 6.56116 6.59150 6.74631 6.97065 7.00921 7.11739 7.25962 7.45295 7.63347 7.78274 7.94948 8.16454 8.45142 8.62003 8.92075 10.03984 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.014196 B = 0.010797 C = 0.006506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.943881 B = 2592.710775 C = 4302.664743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.038 4.038 3 C -0.233 4.233 4 C -0.026 4.026 5 C -0.118 4.118 6 C -0.098 4.098 7 C -0.191 4.191 8 C -0.138 4.138 9 C -0.003 4.003 10 O -0.309 6.309 11 C 0.035 3.965 12 C 0.152 3.848 13 C -0.438 4.438 14 H 0.091 0.909 15 C 0.077 3.923 16 N -0.771 5.771 17 Si 0.901 3.099 18 H -0.257 1.257 19 H -0.269 1.269 20 H -0.272 1.272 21 S -0.008 6.008 22 H 0.049 0.951 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.126 0.874 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.040 0.960 31 H 0.039 0.961 32 H 0.082 0.918 33 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.648 -0.194 -2.259 3.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.077 4.077 3 C -0.347 4.347 4 C -0.055 4.055 5 C -0.125 4.125 6 C -0.213 4.213 7 C -0.216 4.216 8 C -0.159 4.159 9 C -0.049 4.049 10 O -0.224 6.224 11 C -0.062 4.062 12 C 0.147 3.853 13 C -0.466 4.466 14 H 0.109 0.891 15 C -0.143 4.143 16 N -0.394 5.394 17 Si 0.725 3.275 18 H -0.180 1.180 19 H -0.194 1.194 20 H -0.198 1.198 21 S 0.252 5.748 22 H 0.068 0.932 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.143 0.857 28 H 0.113 0.887 29 H 0.121 0.879 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.101 0.899 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.638 -0.822 -3.558 4.505 hybrid contribution 0.180 0.178 1.858 1.875 sum -2.458 -0.644 -1.700 3.057 Atomic orbital electron populations 1.21785 0.95629 1.00598 1.02235 1.19839 0.95113 0.91068 1.01685 1.23386 1.16137 1.00248 0.94921 1.19624 0.95398 0.92658 0.97811 1.18711 1.08033 0.95290 0.90456 1.22186 1.06376 0.97076 0.95678 1.19259 1.12881 0.92376 0.97118 1.20445 1.04725 0.98422 0.92297 1.18780 1.07580 0.91477 0.87072 1.85982 1.81915 1.21073 1.33424 1.22745 0.98190 0.85696 0.99528 1.17658 0.88541 0.86564 0.92537 1.19316 1.36599 0.98033 0.92693 0.89127 1.25917 0.93069 0.95696 0.99628 1.69901 1.22105 1.09397 1.38016 0.86360 0.79855 0.79643 0.81680 1.18030 1.19398 1.19756 1.83285 1.73496 1.07210 1.10769 0.93193 0.92573 0.92761 0.91269 0.92074 0.85650 0.88714 0.87854 0.94117 0.94219 0.89934 0.90438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.89 37.16 0.37 -1.77 16 2 C -0.04 -0.64 6.39 -27.88 -0.18 -0.82 16 3 C -0.23 -4.92 5.69 -36.21 -0.21 -5.12 16 4 C -0.03 -0.62 8.10 -40.78 -0.33 -0.95 16 5 C -0.12 -3.03 5.51 -104.76 -0.58 -3.61 16 6 C -0.10 -2.38 6.49 -38.49 -0.25 -2.63 16 7 C -0.19 -4.37 10.01 -39.14 -0.39 -4.76 16 8 C -0.14 -3.08 8.97 -39.70 -0.36 -3.44 16 9 C 0.00 -0.07 6.70 -38.55 -0.26 -0.33 16 10 O -0.31 -7.05 9.93 -18.86 -0.19 -7.24 16 11 C 0.03 0.58 9.80 101.05 0.99 1.57 16 12 C 0.15 4.04 5.51 -104.13 -0.57 3.47 16 13 C -0.44 -11.41 8.43 -38.11 -0.32 -11.73 16 14 H 0.09 2.33 7.91 -52.49 -0.42 1.92 16 15 C 0.08 1.88 3.86 -17.30 -0.07 1.81 16 16 N -0.77 -19.36 10.81 55.55 0.60 -18.76 16 17 Si 0.90 18.09 29.60 -169.99 -5.03 13.06 16 18 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 19 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 20 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 21 S -0.01 -0.17 23.27 -107.50 -2.50 -2.67 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.13 3.03 6.08 -52.49 -0.32 2.71 16 28 H 0.09 1.93 8.06 -52.49 -0.42 1.51 16 29 H 0.10 1.97 6.22 -52.49 -0.33 1.64 16 30 H 0.04 0.64 7.65 -51.93 -0.40 0.24 16 31 H 0.04 0.60 7.65 -51.93 -0.40 0.21 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 LS Contribution 291.01 15.07 4.39 4.39 Total: -1.00 -27.97 291.01 -8.83 -36.80 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -3.95 Total: 2.74 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: -2.15 Total: -28.32 kcal Atomic # 7 Polarization: -19.36 SS G_CDS: 0.60 Total: -18.76 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -0.19 Total: -7.24 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Atomic # 16 Polarization: -0.17 SS G_CDS: -2.50 Total: -2.67 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.97 -8.83 -36.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396295933.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.220 kcal (2) G-P(sol) polarization free energy of solvation -27.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds