Wall clock time and date at job start Mon Mar 30 2020 06:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47165 * 2 1 4 4 C 1.32633 * 124.67170 * 89.99346 * 3 2 1 5 5 C 1.40103 * 115.79960 * 180.02562 * 4 3 2 6 6 C 1.39592 * 112.70878 * 0.02562 * 5 4 3 7 7 C 1.39820 * 120.17699 * 180.02562 * 6 5 4 8 8 C 1.37833 * 121.56636 * 0.02562 * 7 6 5 9 9 C 1.38311 * 121.01226 * 359.97438 * 8 7 6 10 10 O 1.35717 * 120.01366 * 180.02562 * 9 8 7 11 11 C 1.42904 * 117.00301 * 0.02562 * 10 9 8 12 12 C 1.40905 * 119.97182 * 359.97438 * 9 8 7 13 13 C 1.40415 * 120.42988 * 180.02562 * 12 9 8 14 14 H 1.07991 * 119.99789 * 39.61637 * 13 12 9 15 15 C 1.39972 * 119.99872 * 219.61069 * 13 12 9 16 16 N 1.30900 * 120.00119 * 20.00252 * 15 13 12 17 17 Si 1.86797 * 120.00183 * 199.99564 * 15 13 12 18 18 H 1.48510 * 109.47085 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47350 * 120.00440 * 17 15 13 20 20 H 1.48504 * 109.47484 * 240.00575 * 17 15 13 21 21 S 1.75507 * 124.66541 * 269.69891 * 3 2 1 22 22 H 1.09001 * 109.46818 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46965 * 300.00355 * 1 2 3 24 24 H 1.08999 * 109.46997 * 60.00257 * 1 2 3 25 25 H 1.09001 * 109.47576 * 119.99264 * 2 1 3 26 26 H 1.08994 * 109.47685 * 239.99634 * 2 1 3 27 27 H 1.07993 * 122.10128 * 359.97438 * 4 3 2 28 28 H 1.07992 * 119.22093 * 179.97438 * 7 6 5 29 29 H 1.08000 * 119.49488 * 180.02562 * 8 7 6 30 30 H 1.09000 * 109.46901 * 300.00089 * 11 10 9 31 31 H 1.09002 * 109.47098 * 59.99900 * 11 10 9 32 32 H 1.09002 * 109.47253 * 179.97438 * 11 10 9 33 33 H 0.96993 * 119.99951 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2837 2.1322 1.0908 5 6 2.7447 3.4375 0.8747 6 6 2.8551 3.7525 -0.4807 7 6 3.3023 5.0175 -0.8741 8 6 3.6444 5.9814 0.0499 9 6 3.5567 5.7305 1.4072 10 8 3.8983 6.6945 2.2993 11 6 4.3396 7.9449 1.7662 12 6 3.1114 4.4739 1.8634 13 6 3.0181 4.2089 3.2392 14 1 2.6561 4.9716 3.9126 15 6 3.3943 2.9563 3.7377 16 7 4.1796 2.1807 3.0340 17 14 2.7757 2.3913 5.4073 18 1 1.9091 3.4438 5.9962 19 1 1.9938 1.1390 5.2477 20 1 3.9319 2.1419 6.3052 21 16 2.3723 2.3594 -1.4435 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 2.1413 1.7308 2.0832 28 1 3.3823 5.2446 -1.9268 29 1 3.9855 6.9477 -0.2912 30 1 5.2266 7.7856 1.1530 31 1 3.5483 8.3787 1.1548 32 1 4.5800 8.6240 2.5842 33 1 4.4406 1.3128 3.3797 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396295933.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:46 Heat of formation + Delta-G solvation = -22.737405 kcal Electronic energy + Delta-G solvation = -17359.709566 eV Core-core repulsion = 14668.988563 eV Total energy + Delta-G solvation = -2690.721003 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.48915 -38.73854 -36.18489 -35.61465 -33.11923 -31.77847 -28.95402 -28.04681 -26.83933 -24.80021 -23.24423 -22.28575 -20.64734 -19.46872 -18.15967 -17.47973 -16.95806 -16.51067 -16.20376 -16.03635 -15.29901 -14.83004 -14.68883 -14.35582 -14.10098 -13.75591 -13.49121 -13.21485 -13.06758 -12.86893 -12.62065 -12.48494 -12.20940 -12.12174 -12.09240 -11.78407 -11.58311 -11.16955 -10.99247 -10.79410 -9.72040 -8.79471 -8.74400 -8.16006 -6.23898 0.13327 0.82438 0.99907 1.35077 1.37632 1.43297 1.51156 1.88185 2.19548 2.66488 2.88587 3.46391 4.00843 4.24937 4.26827 4.40038 4.50767 4.51333 4.52179 4.71424 4.76861 4.82466 4.96323 5.00925 5.07904 5.17661 5.27382 5.35541 5.38588 5.46153 5.71505 5.82939 5.96099 6.17059 6.29851 6.63829 6.78841 7.17955 8.28745 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.014196 B = 0.010797 C = 0.006506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.943881 B = 2592.710775 C = 4302.664743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.041 4.041 3 C -0.216 4.216 4 C -0.060 4.060 5 C -0.134 4.134 6 C -0.138 4.138 7 C -0.189 4.189 8 C -0.141 4.141 9 C -0.019 4.019 10 O -0.337 6.337 11 C 0.025 3.975 12 C 0.110 3.890 13 C -0.474 4.474 14 H 0.076 0.924 15 C 0.047 3.953 16 N -0.804 5.804 17 Si 0.967 3.033 18 H -0.260 1.260 19 H -0.258 1.258 20 H -0.265 1.265 21 S 0.039 5.961 22 H 0.082 0.918 23 H 0.043 0.957 24 H 0.054 0.946 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.114 0.886 28 H 0.121 0.879 29 H 0.138 0.862 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.111 0.889 33 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.132 -0.882 -3.302 4.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.081 4.081 3 C -0.331 4.331 4 C -0.089 4.089 5 C -0.141 4.141 6 C -0.253 4.253 7 C -0.214 4.214 8 C -0.162 4.162 9 C -0.065 4.065 10 O -0.252 6.252 11 C -0.070 4.070 12 C 0.105 3.895 13 C -0.503 4.503 14 H 0.094 0.906 15 C -0.171 4.171 16 N -0.429 5.429 17 Si 0.787 3.213 18 H -0.183 1.183 19 H -0.182 1.182 20 H -0.190 1.190 21 S 0.300 5.700 22 H 0.100 0.900 23 H 0.063 0.937 24 H 0.073 0.927 25 H 0.092 0.908 26 H 0.099 0.901 27 H 0.132 0.868 28 H 0.139 0.861 29 H 0.155 0.845 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.130 0.870 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.117 -1.487 -4.622 5.769 hybrid contribution 0.342 0.451 2.007 2.085 sum -2.775 -1.036 -2.615 3.951 Atomic orbital electron populations 1.21739 0.93639 1.02610 1.01705 1.20043 0.96745 0.88384 1.02892 1.24046 1.12826 1.01759 0.94448 1.19597 0.98206 0.92871 0.98244 1.19054 1.07893 0.95959 0.91243 1.22615 1.07646 0.98942 0.96111 1.19703 1.11226 0.91918 0.98567 1.20792 1.04099 0.99882 0.91403 1.19034 1.07539 0.91696 0.88270 1.85930 1.82101 1.22730 1.34457 1.23100 0.98879 0.83739 1.01241 1.18121 0.89943 0.88136 0.93307 1.19354 1.39012 0.99092 0.92812 0.90569 1.26564 0.92492 0.95086 1.02917 1.69935 1.23159 1.09964 1.39836 0.85391 0.79380 0.79219 0.77297 1.18344 1.18204 1.18967 1.82978 1.72518 1.05161 1.09327 0.89951 0.93733 0.92688 0.90813 0.90082 0.86782 0.86077 0.84463 0.93180 0.92708 0.87048 0.89870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 9.89 71.98 0.71 -3.04 16 2 C -0.04 -1.30 6.39 29.85 0.19 -1.11 16 3 C -0.22 -8.93 5.69 24.52 0.14 -8.79 16 4 C -0.06 -2.92 8.10 21.56 0.17 -2.75 16 5 C -0.13 -7.08 5.51 -19.95 -0.11 -7.19 16 6 C -0.14 -6.68 6.49 22.98 0.15 -6.53 16 7 C -0.19 -8.47 10.01 22.56 0.23 -8.25 16 8 C -0.14 -6.22 8.97 22.19 0.20 -6.02 16 9 C -0.02 -0.95 6.70 22.94 0.15 -0.80 16 10 O -0.34 -15.63 9.93 -90.39 -0.90 -16.53 16 11 C 0.03 0.81 9.80 113.37 1.11 1.92 16 12 C 0.11 6.07 5.51 -19.55 -0.11 5.97 16 13 C -0.47 -25.98 8.43 23.22 0.20 -25.79 16 14 H 0.08 4.19 7.91 -2.91 -0.02 4.17 16 15 C 0.05 2.34 3.86 85.25 0.33 2.67 16 16 N -0.80 -41.72 10.81 21.84 0.24 -41.48 16 17 Si 0.97 38.08 29.60 68.60 2.03 40.11 16 18 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 19 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 20 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 21 S 0.04 1.58 23.27 -56.49 -1.31 0.27 16 22 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 24 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.11 5.70 6.08 -2.91 -0.02 5.68 16 28 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 29 H 0.14 4.94 6.22 -2.91 -0.02 4.92 16 30 H 0.05 1.49 7.65 -2.39 -0.02 1.47 16 31 H 0.05 1.57 7.65 -2.39 -0.02 1.55 16 32 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 33 H 0.29 13.60 8.30 -92.71 -0.77 12.84 16 Total: -1.00 -62.52 291.01 4.53 -57.98 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 1.12 Total: 19.34 kcal Atomic # 6 Polarization: -63.06 SS G_CDS: 3.36 Total: -59.70 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: 0.24 Total: -41.48 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -0.90 Total: -16.53 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 2.03 Total: 40.11 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -1.31 Total: 0.27 kcal Total: -62.52 4.53 -57.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396295933.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.247 kcal (2) G-P(sol) polarization free energy of solvation -62.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds