Wall clock time and date at job start Mon Mar 30 2020 06:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.46836 * 2 1 4 4 C 1.32673 * 124.68900 * 89.72509 * 3 2 1 5 5 C 1.40061 * 115.79882 * 179.79096 * 4 3 2 6 6 C 1.39465 * 112.71839 * 0.48205 * 5 4 3 7 7 S 1.75514 * 124.68053 * 270.02140 * 3 2 1 8 8 C 1.40255 * 120.05069 * 179.72844 * 6 5 4 9 9 O 1.35690 * 119.35092 * 180.02562 * 8 6 5 10 10 C 1.42892 * 117.00115 * 180.02562 * 9 8 6 11 11 C 1.38819 * 121.29931 * 0.02562 * 8 6 5 12 12 C 1.37431 * 120.99099 * 0.02562 * 11 8 6 13 13 C 1.40411 * 120.20673 * 359.97274 * 12 11 8 14 14 C 1.40485 * 120.33078 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00366 * 204.96310 * 14 13 12 16 16 C 1.39907 * 119.99828 * 24.95646 * 14 13 12 17 17 N 1.30920 * 120.00104 * 17.87498 * 16 14 13 18 18 Si 1.86803 * 119.99983 * 197.87324 * 16 14 13 19 19 H 1.48505 * 109.46889 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46791 * 119.99952 * 18 16 14 21 21 H 1.48496 * 109.47304 * 240.00140 * 18 16 14 22 22 H 1.09005 * 109.47383 * 299.99868 * 1 2 3 23 23 H 1.09000 * 109.47505 * 60.00194 * 1 2 3 24 24 H 1.09003 * 109.46790 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46970 * 119.99267 * 2 1 3 26 26 H 1.08997 * 109.47104 * 239.99564 * 2 1 3 27 27 H 1.08003 * 122.09400 * 359.97438 * 4 3 2 28 28 H 1.09002 * 109.47458 * 179.97438 * 10 9 8 29 29 H 1.09003 * 109.47366 * 299.99947 * 10 9 8 30 30 H 1.09004 * 109.47390 * 59.99854 * 10 9 8 31 31 H 1.07994 * 119.50143 * 180.02562 * 11 8 6 32 32 H 1.08001 * 119.89262 * 180.02562 * 12 11 8 33 33 H 0.97001 * 120.00046 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2790 2.1345 1.0909 5 6 2.7455 3.4373 0.8745 6 6 2.8561 3.7518 -0.4797 7 16 2.3646 2.3626 -1.4433 8 6 3.3045 5.0217 -0.8715 9 8 3.4062 5.3126 -2.1930 10 6 3.8687 6.6205 -2.5355 11 6 3.6462 5.9868 0.0659 12 6 3.5564 5.7282 1.4127 13 6 3.1137 4.4742 1.8633 14 6 3.0205 4.2072 3.2394 15 1 3.0800 3.1901 3.5974 16 6 2.8506 5.2591 4.1461 17 7 2.4328 6.4259 3.7242 18 14 3.2199 4.9987 5.9586 19 1 3.6745 3.6016 6.1754 20 1 4.2877 5.9381 6.3861 21 1 1.9920 5.2494 6.7551 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5137 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 2.1322 1.7348 2.0834 28 1 3.9037 6.7210 -3.6203 29 1 3.1887 7.3660 -2.1231 30 1 4.8668 6.7723 -2.1245 31 1 3.9876 6.9553 -0.2681 32 1 3.8265 6.4922 2.1267 33 1 2.3147 7.1551 4.3529 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396296033.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:48 Heat of formation + Delta-G solvation = -15.043475 kcal Electronic energy + Delta-G solvation = -17005.015873 eV Core-core repulsion = 14314.628503 eV Total energy + Delta-G solvation = -2690.387369 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.78980 -37.11021 -35.11024 -33.55028 -31.77360 -29.52553 -28.06264 -26.43760 -24.77780 -23.40285 -21.93104 -20.21889 -19.07560 -17.72896 -17.01949 -15.64987 -14.92762 -14.83772 -14.77936 -14.62823 -13.85082 -13.47599 -13.10302 -12.88385 -12.37815 -12.09283 -11.97182 -11.69278 -11.45654 -11.33430 -11.14931 -10.89508 -10.79708 -10.64437 -10.52049 -10.03660 -9.88287 -9.66279 -9.47590 -9.10066 -7.96749 -7.27296 -7.01902 -6.58534 -4.34746 1.84748 2.64063 2.67391 2.95192 3.00389 3.05173 3.13255 3.56520 3.74937 4.32139 4.37052 5.34555 5.42901 5.48621 5.66449 5.72551 5.73758 5.87889 5.99339 6.08871 6.14290 6.27661 6.45546 6.51504 6.53009 6.61374 6.82449 6.96397 7.11414 7.24553 7.45108 7.72326 7.76734 7.86951 8.27238 8.44275 8.58611 8.76291 9.89279 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.014857 B = 0.008479 C = 0.005596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.197959 B = 3301.508043 C = 5002.797314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.038 4.038 3 C -0.236 4.236 4 C -0.061 4.061 5 C -0.162 4.162 6 C -0.092 4.092 7 S 0.023 5.977 8 C 0.005 3.995 9 O -0.331 6.331 10 C 0.039 3.961 11 C -0.136 4.136 12 C -0.165 4.165 13 C 0.134 3.866 14 C -0.430 4.430 15 H 0.085 0.915 16 C 0.072 3.928 17 N -0.774 5.774 18 Si 0.913 3.087 19 H -0.257 1.257 20 H -0.269 1.269 21 H -0.272 1.272 22 H 0.056 0.944 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.124 0.876 28 H 0.082 0.918 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.103 0.897 32 H 0.126 0.874 33 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.119 -3.120 -3.082 4.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.077 4.077 3 C -0.351 4.351 4 C -0.091 4.091 5 C -0.169 4.169 6 C -0.207 4.207 7 S 0.285 5.715 8 C -0.045 4.045 9 O -0.247 6.247 10 C -0.057 4.057 11 C -0.157 4.157 12 C -0.187 4.187 13 C 0.129 3.871 14 C -0.458 4.458 15 H 0.103 0.897 16 C -0.149 4.149 17 N -0.397 5.397 18 Si 0.737 3.263 19 H -0.180 1.180 20 H -0.194 1.194 21 H -0.197 1.197 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.142 0.858 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.121 0.879 32 H 0.143 0.857 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.141 -3.392 -4.671 5.775 hybrid contribution 0.282 0.776 2.377 2.516 sum 0.142 -2.616 -2.295 3.483 Atomic orbital electron populations 1.21789 0.95515 1.00654 1.02382 1.19846 0.95271 0.90878 1.01703 1.23478 1.15705 1.00303 0.95613 1.19545 0.98690 0.92918 0.97944 1.18904 1.10986 0.95992 0.90974 1.21398 1.08340 0.95202 0.95751 1.83481 1.72424 1.06134 1.09506 1.17534 1.12191 0.93176 0.81557 1.85833 1.83926 1.32078 1.22862 1.22712 0.98378 0.84440 1.00149 1.20645 1.04160 0.96797 0.94122 1.20851 1.05927 0.98659 0.93226 1.18400 0.87678 0.89595 0.91461 1.19534 1.40448 0.94857 0.90919 0.89675 1.26051 0.92129 0.94390 1.02292 1.69872 1.29065 1.02873 1.37924 0.86157 0.79138 0.80243 0.80765 1.18035 1.19388 1.19668 0.92486 0.92729 0.93134 0.91221 0.91988 0.85814 0.89972 0.93797 0.93875 0.87891 0.85656 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.89 37.16 0.37 -1.69 16 2 C -0.04 -0.59 6.40 -27.88 -0.18 -0.77 16 3 C -0.24 -4.72 5.69 -36.20 -0.21 -4.93 16 4 C -0.06 -1.37 9.60 -40.79 -0.39 -1.76 16 5 C -0.16 -4.06 6.02 -104.78 -0.63 -4.69 16 6 C -0.09 -2.25 6.43 -38.37 -0.25 -2.50 16 7 S 0.02 0.48 23.24 -107.50 -2.50 -2.02 16 8 C 0.00 0.11 6.72 -38.61 -0.26 -0.15 16 9 O -0.33 -7.16 10.45 -18.77 -0.20 -7.35 16 10 C 0.04 0.64 9.79 101.05 0.99 1.62 16 11 C -0.14 -3.17 8.94 -39.66 -0.35 -3.52 16 12 C -0.16 -4.15 8.65 -39.06 -0.34 -4.48 16 13 C 0.13 3.48 5.75 -104.26 -0.60 2.88 16 14 C -0.43 -10.74 8.81 -38.11 -0.34 -11.08 16 15 H 0.09 2.04 7.52 -52.49 -0.39 1.64 16 16 C 0.07 1.68 5.13 -17.32 -0.09 1.59 16 17 N -0.77 -18.68 10.98 55.55 0.61 -18.07 16 18 Si 0.91 17.39 29.60 -169.99 -5.03 12.36 16 19 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 20 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 21 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 22 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.12 2.58 7.72 -52.48 -0.41 2.17 16 28 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.04 0.68 7.61 -51.93 -0.40 0.29 16 30 H 0.04 0.66 7.62 -51.93 -0.40 0.26 16 31 H 0.10 2.09 6.14 -52.49 -0.32 1.77 16 32 H 0.13 3.17 6.16 -52.49 -0.32 2.85 16 33 H 0.29 6.18 8.30 -40.82 -0.34 5.84 16 LS Contribution 293.31 15.07 4.42 4.42 Total: -1.00 -27.58 293.31 -8.88 -36.45 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -3.91 Total: 3.68 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: -2.27 Total: -29.47 kcal Atomic # 7 Polarization: -18.68 SS G_CDS: 0.61 Total: -18.07 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: -0.20 Total: -7.35 kcal Atomic # 14 Polarization: 17.39 SS G_CDS: -5.03 Total: 12.36 kcal Atomic # 16 Polarization: 0.48 SS G_CDS: -2.50 Total: -2.02 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.58 -8.88 -36.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396296033.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.407 kcal (2) G-P(sol) polarization free energy of solvation -27.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds