Wall clock time and date at job start Mon Mar 30 2020 06:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.46850 * 2 1 4 4 C 1.35797 * 119.72545 * 264.97426 * 3 2 1 5 5 C 1.39498 * 120.58418 * 179.97438 * 4 3 2 6 6 O 1.35790 * 119.94625 * 180.02562 * 5 4 3 7 7 C 1.42901 * 117.00182 * 180.02562 * 6 5 4 8 8 C 1.38308 * 120.10688 * 359.97438 * 5 4 3 9 9 C 1.39419 * 120.24028 * 0.06175 * 8 5 4 10 10 S 1.75997 * 130.21170 * 180.28644 * 9 8 5 11 11 C 1.75457 * 91.78379 * 180.02562 * 10 9 8 12 12 C 1.39871 * 124.82295 * 179.91520 * 11 10 9 13 13 H 1.08005 * 119.99524 * 193.76922 * 12 11 10 14 14 C 1.40109 * 120.00413 * 13.76710 * 12 11 10 15 15 N 1.30806 * 120.00152 * 200.09578 * 14 12 11 16 16 Si 1.86807 * 119.99920 * 20.09527 * 14 12 11 17 17 H 1.48498 * 109.47123 * 270.00395 * 16 14 12 18 18 H 1.48503 * 109.46920 * 29.99992 * 16 14 12 19 19 H 1.48493 * 109.47344 * 150.00008 * 16 14 12 20 20 C 1.36984 * 110.34692 * 359.65501 * 11 10 9 21 21 C 1.39711 * 115.05596 * 0.26145 * 20 11 10 22 22 H 1.09005 * 109.46673 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47521 * 299.99571 * 1 2 3 24 24 H 1.09000 * 109.47259 * 60.00044 * 1 2 3 25 25 H 1.08997 * 109.47521 * 240.00429 * 2 1 3 26 26 H 1.09000 * 109.47259 * 119.99955 * 2 1 3 27 27 H 1.07994 * 119.70358 * 359.97438 * 4 3 2 28 28 H 1.08998 * 109.47507 * 180.02562 * 7 6 5 29 29 H 1.09005 * 109.46967 * 300.00711 * 7 6 5 30 30 H 1.08999 * 109.47357 * 59.99989 * 7 6 5 31 31 H 1.08002 * 119.88255 * 180.02562 * 8 5 4 32 32 H 0.96993 * 119.99914 * 354.76495 * 15 14 12 33 33 H 1.08005 * 122.47070 * 180.24123 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3540 2.0213 -1.1747 5 6 2.8201 3.3359 -1.1956 6 8 3.1377 3.9238 -2.3777 7 6 3.6094 5.2717 -2.3259 8 6 2.9584 4.0418 -0.0143 9 6 2.6343 3.4441 1.2029 10 16 2.7015 4.0891 2.8390 11 6 2.1140 2.5810 3.5164 12 6 1.9040 2.3457 4.8791 13 1 1.7567 1.3371 5.2365 14 6 1.8847 3.4181 5.7805 15 7 2.0835 3.2045 7.0556 16 14 1.5750 5.1532 5.1613 17 1 2.8691 5.7927 4.8127 18 1 0.7081 5.1015 3.9567 19 1 0.9016 5.9445 6.2221 20 6 1.8848 1.6688 2.5205 21 6 2.1647 2.1206 1.2284 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8934 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.2482 1.4761 -2.1010 28 1 3.8258 5.6201 -3.3358 29 1 2.8450 5.9072 -1.8787 30 1 4.5168 5.3163 -1.7237 31 1 3.3192 5.0596 -0.0347 32 1 2.1686 2.2972 7.3878 33 1 1.5153 0.6736 2.7195 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396296115.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:50 Heat of formation + Delta-G solvation = -32.891191 kcal Electronic energy + Delta-G solvation = -17026.814002 eV Core-core repulsion = 14335.652698 eV Total energy + Delta-G solvation = -2691.161304 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.46464 -37.54201 -34.91768 -33.43840 -32.67193 -29.60670 -28.50264 -27.16987 -24.63882 -23.21811 -22.30583 -20.20576 -19.14672 -18.79454 -17.25418 -15.96527 -15.43703 -15.26095 -14.97344 -14.27073 -14.01388 -13.56946 -13.28665 -13.00239 -12.83331 -12.32355 -12.18118 -11.98589 -11.64312 -11.50811 -11.20494 -11.14493 -10.84464 -10.63280 -10.50458 -10.36967 -9.92764 -9.68550 -9.29380 -8.99783 -8.52897 -7.81423 -7.30176 -6.68025 -4.68306 1.85851 2.09647 2.42279 2.92703 3.07597 3.19985 3.44998 3.51976 3.76620 3.82834 4.47369 4.86120 5.29786 5.39342 5.40985 5.51950 5.60491 5.69666 5.84742 5.89064 6.04836 6.24748 6.27981 6.35825 6.40303 6.62459 6.67308 6.97104 7.05733 7.07487 7.19258 7.31512 7.46925 7.64668 7.82555 8.02188 8.14029 8.31077 9.54669 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.021403 B = 0.007548 C = 0.005845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.902146 B = 3708.726262 C = 4789.156331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.071 4.071 3 C -0.083 4.083 4 C -0.118 4.118 5 C 0.051 3.949 6 O -0.325 6.325 7 C 0.033 3.967 8 C -0.142 4.142 9 C -0.182 4.182 10 S -0.032 6.032 11 C 0.062 3.938 12 C -0.445 4.445 13 H 0.097 0.903 14 C 0.047 3.953 15 N -0.779 5.779 16 Si 0.974 3.026 17 H -0.236 1.236 18 H -0.224 1.224 19 H -0.245 1.245 20 C -0.355 4.355 21 C 0.013 3.987 22 H 0.048 0.952 23 H 0.060 0.940 24 H 0.050 0.950 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.115 0.885 28 H 0.089 0.911 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.111 0.889 32 H 0.294 0.706 33 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.185 1.520 -9.346 9.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 C -0.085 4.085 4 C -0.138 4.138 5 C 0.005 3.995 6 O -0.240 6.240 7 C -0.063 4.063 8 C -0.166 4.166 9 C -0.296 4.296 10 S 0.225 5.775 11 C -0.055 4.055 12 C -0.478 4.478 13 H 0.115 0.885 14 C -0.178 4.178 15 N -0.399 5.399 16 Si 0.795 3.205 17 H -0.162 1.162 18 H -0.147 1.147 19 H -0.169 1.169 20 C -0.379 4.379 21 C 0.005 3.995 22 H 0.067 0.933 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.133 0.867 28 H 0.108 0.892 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.129 0.871 32 H 0.106 0.894 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.125 4.258 -8.314 9.342 hybrid contribution -0.102 -2.715 -0.684 2.802 sum 0.023 1.542 -8.999 9.130 Atomic orbital electron populations 1.21717 0.95450 1.00668 1.02271 1.20326 0.95698 0.93058 1.01731 1.19127 1.02664 0.95641 0.91070 1.19477 1.04300 0.92580 0.97458 1.18357 1.04196 0.93399 0.83508 1.85918 1.81580 1.27745 1.28788 1.22852 0.98607 0.82215 1.02617 1.20178 1.06747 0.99184 0.90457 1.22102 1.13206 0.98103 0.96142 1.83941 1.74367 1.19862 0.99364 1.21188 0.95439 0.92297 0.96589 1.20243 1.39536 0.97416 0.90639 0.88533 1.27407 0.90343 1.06521 0.93552 1.70522 1.26656 1.27200 1.15554 0.84288 0.82573 0.73784 0.79832 1.16174 1.14738 1.16944 1.19491 1.26709 1.02288 0.89452 1.17846 0.96628 0.91718 0.93292 0.93281 0.92083 0.93107 0.92169 0.91242 0.86735 0.89240 0.93343 0.93337 0.87100 0.89371 0.86930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.89 37.16 0.37 -1.83 16 2 C -0.07 -1.18 5.77 -27.88 -0.16 -1.34 16 3 C -0.08 -1.67 5.17 -104.06 -0.54 -2.21 16 4 C -0.12 -2.25 9.48 -39.99 -0.38 -2.63 16 5 C 0.05 0.99 6.70 -39.09 -0.26 0.73 16 6 O -0.33 -5.62 10.49 -19.08 -0.20 -5.82 16 7 C 0.03 0.42 9.81 101.05 0.99 1.42 16 8 C -0.14 -2.91 9.06 -39.12 -0.35 -3.26 16 9 C -0.18 -4.20 6.47 -38.31 -0.25 -4.45 16 10 S -0.03 -0.76 16.94 -107.50 -1.82 -2.58 16 11 C 0.06 1.57 5.70 -39.43 -0.22 1.34 16 12 C -0.44 -11.29 9.61 -38.27 -0.37 -11.66 16 13 H 0.10 2.48 8.06 -52.48 -0.42 2.06 16 14 C 0.05 1.15 5.50 -17.29 -0.10 1.06 16 15 N -0.78 -19.22 13.65 55.56 0.76 -18.46 16 16 Si 0.97 20.73 24.75 -169.99 -4.21 16.52 16 17 H -0.24 -4.84 6.84 56.52 0.39 -4.45 16 18 H -0.22 -4.74 6.55 56.52 0.37 -4.37 16 19 H -0.24 -4.89 7.11 56.52 0.40 -4.49 16 20 C -0.36 -8.62 9.57 -39.49 -0.38 -9.00 16 21 C 0.01 0.29 5.82 -107.07 -0.62 -0.33 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.87 8.02 -51.93 -0.42 0.46 16 26 H 0.07 1.19 7.37 -51.93 -0.38 0.81 16 27 H 0.11 1.92 8.03 -52.49 -0.42 1.50 16 28 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.05 0.60 7.65 -51.93 -0.40 0.21 16 30 H 0.05 0.61 7.65 -51.93 -0.40 0.21 16 31 H 0.11 2.02 6.26 -52.49 -0.33 1.69 16 32 H 0.29 6.96 8.73 -40.82 -0.36 6.60 16 33 H 0.11 2.64 7.48 -52.48 -0.39 2.24 16 LS Contribution 286.68 15.07 4.32 4.32 Total: -1.00 -26.66 286.68 -7.47 -34.13 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -4.05 Total: 4.06 kcal Atomic # 6 Polarization: -29.90 SS G_CDS: -2.27 Total: -32.17 kcal Atomic # 7 Polarization: -19.22 SS G_CDS: 0.76 Total: -18.46 kcal Atomic # 8 Polarization: -5.62 SS G_CDS: -0.20 Total: -5.82 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.21 Total: 16.52 kcal Atomic # 16 Polarization: -0.76 SS G_CDS: -1.82 Total: -2.58 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -26.66 -7.47 -34.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396296115.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.243 kcal (2) G-P(sol) polarization free energy of solvation -26.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds