Wall clock time and date at job start Mon Mar 30 2020 06:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.46850 * 2 1 4 4 C 1.35797 * 119.72545 * 264.97426 * 3 2 1 5 5 C 1.39498 * 120.58418 * 179.97438 * 4 3 2 6 6 O 1.35790 * 119.94625 * 180.02562 * 5 4 3 7 7 C 1.42901 * 117.00182 * 180.02562 * 6 5 4 8 8 C 1.38308 * 120.10688 * 359.97438 * 5 4 3 9 9 C 1.39419 * 120.24028 * 0.06175 * 8 5 4 10 10 S 1.75997 * 130.21170 * 180.28644 * 9 8 5 11 11 C 1.75457 * 91.78379 * 180.02562 * 10 9 8 12 12 C 1.39871 * 124.82295 * 179.91520 * 11 10 9 13 13 H 1.08005 * 119.99524 * 193.76922 * 12 11 10 14 14 C 1.40109 * 120.00413 * 13.76710 * 12 11 10 15 15 N 1.30806 * 120.00152 * 200.09578 * 14 12 11 16 16 Si 1.86807 * 119.99920 * 20.09527 * 14 12 11 17 17 H 1.48498 * 109.47123 * 270.00395 * 16 14 12 18 18 H 1.48503 * 109.46920 * 29.99992 * 16 14 12 19 19 H 1.48493 * 109.47344 * 150.00008 * 16 14 12 20 20 C 1.36984 * 110.34692 * 359.65501 * 11 10 9 21 21 C 1.39711 * 115.05596 * 0.26145 * 20 11 10 22 22 H 1.09005 * 109.46673 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47521 * 299.99571 * 1 2 3 24 24 H 1.09000 * 109.47259 * 60.00044 * 1 2 3 25 25 H 1.08997 * 109.47521 * 240.00429 * 2 1 3 26 26 H 1.09000 * 109.47259 * 119.99955 * 2 1 3 27 27 H 1.07994 * 119.70358 * 359.97438 * 4 3 2 28 28 H 1.08998 * 109.47507 * 180.02562 * 7 6 5 29 29 H 1.09005 * 109.46967 * 300.00711 * 7 6 5 30 30 H 1.08999 * 109.47357 * 59.99989 * 7 6 5 31 31 H 1.08002 * 119.88255 * 180.02562 * 8 5 4 32 32 H 0.96993 * 119.99914 * 354.76495 * 15 14 12 33 33 H 1.08005 * 122.47070 * 180.24123 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3540 2.0213 -1.1747 5 6 2.8201 3.3359 -1.1956 6 8 3.1377 3.9238 -2.3777 7 6 3.6094 5.2717 -2.3259 8 6 2.9584 4.0418 -0.0143 9 6 2.6343 3.4441 1.2029 10 16 2.7015 4.0891 2.8390 11 6 2.1140 2.5810 3.5164 12 6 1.9040 2.3457 4.8791 13 1 1.7567 1.3371 5.2365 14 6 1.8847 3.4181 5.7805 15 7 2.0835 3.2045 7.0556 16 14 1.5750 5.1532 5.1613 17 1 2.8691 5.7927 4.8127 18 1 0.7081 5.1015 3.9567 19 1 0.9016 5.9445 6.2221 20 6 1.8848 1.6688 2.5205 21 6 2.1647 2.1206 1.2284 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8934 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.2482 1.4761 -2.1010 28 1 3.8258 5.6201 -3.3358 29 1 2.8450 5.9072 -1.8787 30 1 4.5168 5.3163 -1.7237 31 1 3.3192 5.0596 -0.0347 32 1 2.1686 2.2972 7.3878 33 1 1.5153 0.6736 2.7195 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396296115.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:50 Heat of formation + Delta-G solvation = -46.831474 kcal Electronic energy + Delta-G solvation = -17027.418498 eV Core-core repulsion = 14335.652698 eV Total energy + Delta-G solvation = -2691.765800 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.99683 -39.05115 -36.69107 -35.03998 -34.25264 -31.21324 -30.08085 -28.41388 -26.27714 -24.69135 -23.93785 -21.78415 -20.89768 -20.56987 -18.72888 -17.51404 -17.14658 -16.61257 -16.52989 -15.92349 -15.44315 -14.98686 -14.96083 -14.56091 -14.37039 -13.92285 -13.78395 -13.52762 -12.99133 -12.94455 -12.77039 -12.65669 -12.34670 -12.17760 -12.06445 -11.79823 -11.58811 -11.42511 -10.98294 -10.69387 -10.18614 -9.67888 -9.01697 -8.43603 -6.56789 0.15343 0.45033 0.69203 1.15692 1.28243 1.44853 1.72637 1.82191 2.06697 2.52318 2.71379 3.07668 3.87820 4.13960 4.21940 4.36237 4.41492 4.42311 4.56552 4.59432 4.69356 4.73816 4.91185 4.93022 5.04429 5.09576 5.18331 5.29769 5.37029 5.43074 5.45825 5.55371 5.79080 5.88185 6.01692 6.22376 6.46518 6.63404 7.68845 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.021403 B = 0.007548 C = 0.005845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.902146 B = 3708.726262 C = 4789.156331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.072 4.072 3 C -0.074 4.074 4 C -0.125 4.125 5 C 0.075 3.925 6 O -0.329 6.329 7 C 0.021 3.979 8 C -0.161 4.161 9 C -0.194 4.194 10 S -0.023 6.023 11 C 0.037 3.963 12 C -0.482 4.482 13 H 0.074 0.926 14 C 0.024 3.976 15 N -0.800 5.800 16 Si 0.994 3.006 17 H -0.223 1.223 18 H -0.227 1.227 19 H -0.222 1.222 20 C -0.357 4.357 21 C -0.023 4.023 22 H 0.075 0.925 23 H 0.033 0.967 24 H 0.060 0.940 25 H 0.091 0.909 26 H 0.058 0.942 27 H 0.146 0.854 28 H 0.125 0.875 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.132 0.868 32 H 0.290 0.710 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.032 2.355 -12.854 13.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.110 4.110 3 C -0.076 4.076 4 C -0.145 4.145 5 C 0.028 3.972 6 O -0.243 6.243 7 C -0.074 4.074 8 C -0.184 4.184 9 C -0.307 4.307 10 S 0.234 5.766 11 C -0.080 4.080 12 C -0.516 4.516 13 H 0.092 0.908 14 C -0.197 4.197 15 N -0.422 5.422 16 Si 0.810 3.190 17 H -0.148 1.148 18 H -0.150 1.150 19 H -0.145 1.145 20 C -0.382 4.382 21 C -0.030 4.030 22 H 0.094 0.906 23 H 0.053 0.947 24 H 0.079 0.921 25 H 0.110 0.890 26 H 0.077 0.923 27 H 0.164 0.836 28 H 0.143 0.857 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.150 0.850 32 H 0.101 0.899 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.349 5.091 -11.814 12.869 hybrid contribution -0.109 -3.024 -0.036 3.026 sum 0.240 2.067 -11.850 12.031 Atomic orbital electron populations 1.21673 0.94293 1.02228 1.01413 1.20434 0.96624 0.91150 1.02758 1.19545 1.00843 0.97001 0.90242 1.19871 1.03581 0.92826 0.98251 1.18601 1.01197 0.93395 0.83986 1.85941 1.81101 1.29933 1.27348 1.23238 0.98847 0.80011 1.05263 1.20409 1.07663 1.00509 0.89845 1.22425 1.13246 0.98356 0.96678 1.83694 1.74225 1.18758 0.99943 1.21322 0.96290 0.93765 0.96670 1.20142 1.43057 0.96890 0.91482 0.90827 1.28253 0.89497 1.08648 0.93287 1.70567 1.28826 1.26907 1.15857 0.84105 0.83239 0.71544 0.80098 1.14843 1.15042 1.14513 1.19665 1.26088 1.02057 0.90341 1.18080 0.98549 0.92531 0.93864 0.90609 0.94732 0.92097 0.89017 0.92318 0.83590 0.85659 0.92728 0.92781 0.84978 0.89895 0.87407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.93 9.89 71.98 0.71 -3.22 16 2 C -0.07 -2.24 5.77 29.85 0.17 -2.07 16 3 C -0.07 -2.83 5.17 -19.50 -0.10 -2.93 16 4 C -0.13 -4.32 9.48 22.01 0.21 -4.11 16 5 C 0.07 2.64 6.70 22.59 0.15 2.80 16 6 O -0.33 -9.89 10.49 -91.20 -0.96 -10.85 16 7 C 0.02 0.45 9.81 113.37 1.11 1.56 16 8 C -0.16 -6.18 9.06 22.57 0.20 -5.97 16 9 C -0.19 -8.75 6.47 23.10 0.15 -8.60 16 10 S -0.02 -1.09 16.94 -56.49 -0.96 -2.05 16 11 C 0.04 1.91 5.70 22.37 0.13 2.03 16 12 C -0.48 -25.94 9.61 23.12 0.22 -25.72 16 13 H 0.07 4.12 8.06 -2.91 -0.02 4.10 16 14 C 0.02 1.22 5.50 85.30 0.47 1.69 16 15 N -0.80 -41.13 13.65 21.86 0.30 -40.83 16 16 Si 0.99 42.00 24.75 68.60 1.70 43.70 16 17 H -0.22 -8.91 6.84 99.48 0.68 -8.23 16 18 H -0.23 -9.58 6.55 99.48 0.65 -8.93 16 19 H -0.22 -8.49 7.11 99.48 0.71 -7.79 16 20 C -0.36 -17.83 9.57 22.33 0.21 -17.61 16 21 C -0.02 -1.06 5.82 -21.45 -0.12 -1.18 16 22 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 23 H 0.03 1.14 8.14 -2.39 -0.02 1.13 16 24 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.09 2.28 8.02 -2.39 -0.02 2.26 16 26 H 0.06 1.95 7.37 -2.39 -0.02 1.93 16 27 H 0.15 4.14 8.03 -2.91 -0.02 4.11 16 28 H 0.13 1.82 8.14 -2.39 -0.02 1.81 16 29 H 0.05 1.14 7.65 -2.38 -0.02 1.12 16 30 H 0.05 1.13 7.65 -2.39 -0.02 1.11 16 31 H 0.13 4.41 6.26 -2.91 -0.02 4.39 16 32 H 0.29 14.54 8.73 -92.71 -0.81 13.73 16 33 H 0.11 5.30 7.48 -2.91 -0.02 5.28 16 Total: -1.00 -58.64 286.68 4.59 -54.05 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.99 Total: 19.31 kcal Atomic # 6 Polarization: -66.85 SS G_CDS: 3.52 Total: -63.33 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: 0.30 Total: -40.83 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: -0.96 Total: -10.85 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 1.70 Total: 43.70 kcal Atomic # 16 Polarization: -1.09 SS G_CDS: -0.96 Total: -2.05 kcal Total: -58.64 4.59 -54.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396296115.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.214 kcal (2) G-P(sol) polarization free energy of solvation -58.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds