Wall clock time and date at job start Mon Mar 30 2020 06:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50706 * 109.46956 * 2 1 4 4 C 1.35943 * 119.67230 * 264.72602 * 3 2 1 5 5 C 1.41899 * 120.46858 * 179.77072 * 4 3 2 6 6 C 1.39804 * 128.54089 * 180.20747 * 5 4 3 7 7 C 1.36943 * 115.02423 * 180.29724 * 6 5 4 8 8 C 1.39924 * 124.82130 * 179.97438 * 7 6 5 9 9 H 1.07993 * 120.00315 * 359.97438 * 8 7 6 10 10 C 1.40187 * 119.99809 * 180.02562 * 8 7 6 11 11 N 1.30760 * 120.00162 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00100 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47130 * 59.99804 * 12 10 8 14 14 H 1.48505 * 109.47644 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47011 * 299.99836 * 12 10 8 16 16 S 1.75456 * 110.35343 * 0.02562 * 7 6 5 17 17 C 1.40369 * 118.58330 * 0.52162 * 5 4 3 18 18 C 1.39603 * 119.77048 * 359.73281 * 17 5 4 19 19 C 1.37702 * 120.28508 * 0.02562 * 18 17 5 20 20 C 1.50703 * 119.88546 * 179.97438 * 19 18 17 21 21 O 1.42898 * 109.47047 * 0.02659 * 20 19 18 22 22 H 1.09002 * 109.47311 * 59.99562 * 1 2 3 23 23 H 1.09002 * 109.46959 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47335 * 299.99441 * 1 2 3 25 25 H 1.08999 * 109.46886 * 240.00748 * 2 1 3 26 26 H 1.08999 * 109.47559 * 119.99979 * 2 1 3 27 27 H 1.07997 * 119.76860 * 0.02562 * 4 3 2 28 28 H 1.07996 * 122.48792 * 0.31888 * 6 5 4 29 29 H 0.97003 * 120.00424 * 179.97438 * 11 10 8 30 30 H 1.08001 * 119.86036 * 179.97438 * 18 17 5 31 31 H 1.09000 * 109.46469 * 120.02726 * 20 19 18 32 32 H 1.08994 * 109.47347 * 240.02318 * 20 19 18 33 33 H 0.96692 * 114.00176 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3589 2.0192 -1.1762 5 6 2.8290 3.3579 -1.1963 6 6 3.2055 4.1325 -2.2975 7 6 3.6269 5.4004 -1.9971 8 6 4.0497 6.3458 -2.9379 9 1 4.0593 6.0954 -3.9884 10 6 4.4618 7.6179 -2.5169 11 7 4.4506 7.9210 -1.2449 12 14 5.0269 8.8798 -3.7728 13 1 3.9230 9.1577 -4.7265 14 1 5.4080 10.1350 -3.0766 15 1 6.1996 8.3498 -4.5138 16 16 3.5625 5.6703 -0.2646 17 6 2.9585 4.0426 0.0223 18 6 2.6210 3.4026 1.2162 19 6 2.1628 2.1042 1.2027 20 6 1.8015 1.4218 2.4969 21 8 2.0183 2.3210 3.5861 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8932 -0.5137 -0.8901 26 1 1.8934 -0.5138 0.8900 27 1 2.2561 1.4731 -2.1022 28 1 3.1667 3.7588 -3.3100 29 1 4.7361 8.8011 -0.9535 30 1 2.7205 3.9279 2.1546 31 1 0.7523 1.1276 2.4719 32 1 2.4241 0.5367 2.6271 33 1 1.8057 1.9480 4.4525 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396296280.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:31 Heat of formation + Delta-G solvation = -49.202589 kcal Electronic energy + Delta-G solvation = -16757.936412 eV Core-core repulsion = 14066.067793 eV Total energy + Delta-G solvation = -2691.868620 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.81190 -36.42499 -35.15911 -34.05231 -32.06154 -29.78699 -28.57706 -26.77271 -24.17605 -23.11289 -21.10392 -20.87368 -18.48966 -17.98922 -16.90831 -15.76796 -15.37603 -14.68909 -14.53357 -14.21440 -13.84775 -13.43834 -12.97811 -12.68557 -12.48786 -12.27326 -12.08671 -11.86194 -11.48198 -11.44559 -11.17393 -10.82087 -10.77834 -10.53155 -10.31870 -9.98219 -9.85039 -9.71349 -9.09619 -8.98850 -8.30110 -7.24953 -7.14289 -6.29439 -4.65110 2.10263 2.45591 2.84481 2.85701 2.89923 3.34652 3.58192 3.60063 3.92115 4.61350 4.62211 5.08277 5.30199 5.31752 5.58277 5.66000 5.80284 5.86252 5.95931 6.04406 6.11395 6.21767 6.47158 6.59046 6.69256 6.77694 6.94872 7.19515 7.24858 7.39063 7.53554 7.63459 7.79624 7.92955 7.96021 8.14924 8.37220 8.44610 9.68213 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.035386 B = 0.005263 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.094033 B = 5318.929916 C = 6007.860011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.080 4.080 3 C -0.066 4.066 4 C -0.150 4.150 5 C 0.022 3.978 6 C -0.366 4.366 7 C 0.057 3.943 8 C -0.385 4.385 9 H 0.098 0.902 10 C 0.053 3.947 11 N -0.776 5.776 12 Si 0.939 3.061 13 H -0.259 1.259 14 H -0.273 1.273 15 H -0.259 1.259 16 S 0.137 5.863 17 C -0.271 4.271 18 C -0.021 4.021 19 C -0.177 4.177 20 C 0.137 3.863 21 O -0.569 6.569 22 H 0.055 0.945 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.101 0.899 28 H 0.105 0.895 29 H 0.301 0.699 30 H 0.112 0.888 31 H 0.044 0.956 32 H 0.042 0.958 33 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.059 -6.315 3.732 7.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 C -0.068 4.068 4 C -0.170 4.170 5 C 0.014 3.986 6 C -0.391 4.391 7 C -0.063 4.063 8 C -0.419 4.419 9 H 0.116 0.884 10 C -0.168 4.168 11 N -0.402 5.402 12 Si 0.762 3.238 13 H -0.184 1.184 14 H -0.197 1.197 15 H -0.184 1.184 16 S 0.397 5.603 17 C -0.386 4.386 18 C -0.044 4.044 19 C -0.179 4.179 20 C 0.060 3.940 21 O -0.373 6.373 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.119 0.881 28 H 0.123 0.877 29 H 0.115 0.885 30 H 0.130 0.870 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -2.470 -4.506 4.287 6.692 hybrid contribution -0.275 -1.066 -1.047 1.520 sum -2.745 -5.572 3.240 7.006 Atomic orbital electron populations 1.21737 0.95568 1.00600 1.02260 1.20467 0.95598 0.94058 1.01642 1.18640 1.00852 0.94784 0.92556 1.20281 1.06168 0.94454 0.96110 1.18029 0.95191 0.92997 0.92376 1.19601 1.26758 0.95813 0.96939 1.21438 0.94325 0.95129 0.95410 1.19291 1.32480 0.94723 0.95442 0.88435 1.26318 0.93723 1.00125 0.96681 1.68653 1.32592 1.23194 1.15798 0.85808 0.80133 0.78021 0.79880 1.18362 1.19708 1.18367 1.84787 1.68199 1.04744 1.02567 1.23706 1.14604 1.03945 0.96335 1.19970 0.95766 0.93271 0.95354 1.18767 1.11396 0.95697 0.92084 1.20717 0.97778 0.90496 0.84984 1.86534 1.90612 1.43082 1.17068 0.92561 0.93234 0.92781 0.91819 0.92024 0.88086 0.87727 0.88541 0.87040 0.93832 0.94001 0.78374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.88 37.16 0.37 -1.54 16 2 C -0.08 -1.20 5.54 -27.88 -0.15 -1.35 16 3 C -0.07 -1.29 5.08 -105.18 -0.53 -1.82 16 4 C -0.15 -3.32 9.63 -39.00 -0.38 -3.69 16 5 C 0.02 0.56 5.86 -107.11 -0.63 -0.06 16 6 C -0.37 -9.60 10.14 -39.47 -0.40 -10.00 16 7 C 0.06 1.51 6.11 -39.42 -0.24 1.27 16 8 C -0.39 -9.73 9.27 -38.22 -0.35 -10.08 16 9 H 0.10 2.31 7.85 -52.49 -0.41 1.90 16 10 C 0.05 1.23 5.50 -17.28 -0.10 1.13 16 11 N -0.78 -18.54 10.58 55.56 0.59 -17.95 16 12 Si 0.94 17.16 29.56 -169.99 -5.03 12.14 16 13 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 14 H -0.27 -4.81 7.11 56.52 0.40 -4.41 16 15 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 16 S 0.14 3.51 20.13 -107.50 -2.16 1.35 16 17 C -0.27 -6.87 6.47 -38.27 -0.25 -7.12 16 18 C -0.02 -0.50 9.40 -39.27 -0.37 -0.86 16 19 C -0.18 -3.58 5.88 -104.56 -0.62 -4.20 16 20 C 0.14 2.16 6.21 36.01 0.22 2.39 16 21 O -0.57 -8.77 12.12 -35.23 -0.43 -9.20 16 22 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.71 6.76 -51.93 -0.35 0.36 16 25 H 0.06 0.90 8.01 -51.93 -0.42 0.48 16 26 H 0.06 0.82 6.81 -51.93 -0.35 0.47 16 27 H 0.10 2.03 8.03 -52.49 -0.42 1.61 16 28 H 0.10 2.61 8.06 -52.49 -0.42 2.19 16 29 H 0.30 6.44 8.29 -40.82 -0.34 6.10 16 30 H 0.11 2.51 6.97 -52.49 -0.37 2.14 16 31 H 0.04 0.61 6.73 -51.93 -0.35 0.26 16 32 H 0.04 0.59 7.49 -51.93 -0.39 0.20 16 33 H 0.37 3.52 9.12 45.56 0.42 3.94 16 LS Contribution 289.09 15.07 4.36 4.36 Total: -1.00 -28.97 289.09 -9.14 -38.11 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -3.05 Total: 7.14 kcal Atomic # 6 Polarization: -32.52 SS G_CDS: -3.42 Total: -35.94 kcal Atomic # 7 Polarization: -18.54 SS G_CDS: 0.59 Total: -17.95 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -0.43 Total: -9.20 kcal Atomic # 14 Polarization: 17.16 SS G_CDS: -5.03 Total: 12.14 kcal Atomic # 16 Polarization: 3.51 SS G_CDS: -2.16 Total: 1.35 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.97 -9.14 -38.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396296280.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.093 kcal (2) G-P(sol) polarization free energy of solvation -28.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds