Wall clock time and date at job start Mon Mar 30 2020 06:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50706 * 109.46956 * 2 1 4 4 C 1.35943 * 119.67230 * 264.72602 * 3 2 1 5 5 C 1.41899 * 120.46858 * 179.77072 * 4 3 2 6 6 C 1.39804 * 128.54089 * 180.20747 * 5 4 3 7 7 C 1.36943 * 115.02423 * 180.29724 * 6 5 4 8 8 C 1.39924 * 124.82130 * 179.97438 * 7 6 5 9 9 H 1.07993 * 120.00315 * 359.97438 * 8 7 6 10 10 C 1.40187 * 119.99809 * 180.02562 * 8 7 6 11 11 N 1.30760 * 120.00162 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00100 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47130 * 59.99804 * 12 10 8 14 14 H 1.48505 * 109.47644 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47011 * 299.99836 * 12 10 8 16 16 S 1.75456 * 110.35343 * 0.02562 * 7 6 5 17 17 C 1.40369 * 118.58330 * 0.52162 * 5 4 3 18 18 C 1.39603 * 119.77048 * 359.73281 * 17 5 4 19 19 C 1.37702 * 120.28508 * 0.02562 * 18 17 5 20 20 C 1.50703 * 119.88546 * 179.97438 * 19 18 17 21 21 O 1.42898 * 109.47047 * 0.02659 * 20 19 18 22 22 H 1.09002 * 109.47311 * 59.99562 * 1 2 3 23 23 H 1.09002 * 109.46959 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47335 * 299.99441 * 1 2 3 25 25 H 1.08999 * 109.46886 * 240.00748 * 2 1 3 26 26 H 1.08999 * 109.47559 * 119.99979 * 2 1 3 27 27 H 1.07997 * 119.76860 * 0.02562 * 4 3 2 28 28 H 1.07996 * 122.48792 * 0.31888 * 6 5 4 29 29 H 0.97003 * 120.00424 * 179.97438 * 11 10 8 30 30 H 1.08001 * 119.86036 * 179.97438 * 18 17 5 31 31 H 1.09000 * 109.46469 * 120.02726 * 20 19 18 32 32 H 1.08994 * 109.47347 * 240.02318 * 20 19 18 33 33 H 0.96692 * 114.00176 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3589 2.0192 -1.1762 5 6 2.8290 3.3579 -1.1963 6 6 3.2055 4.1325 -2.2975 7 6 3.6269 5.4004 -1.9971 8 6 4.0497 6.3458 -2.9379 9 1 4.0593 6.0954 -3.9884 10 6 4.4618 7.6179 -2.5169 11 7 4.4506 7.9210 -1.2449 12 14 5.0269 8.8798 -3.7728 13 1 3.9230 9.1577 -4.7265 14 1 5.4080 10.1350 -3.0766 15 1 6.1996 8.3498 -4.5138 16 16 3.5625 5.6703 -0.2646 17 6 2.9585 4.0426 0.0223 18 6 2.6210 3.4026 1.2162 19 6 2.1628 2.1042 1.2027 20 6 1.8015 1.4218 2.4969 21 8 2.0183 2.3210 3.5861 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8932 -0.5137 -0.8901 26 1 1.8934 -0.5138 0.8900 27 1 2.2561 1.4731 -2.1022 28 1 3.1667 3.7588 -3.3100 29 1 4.7361 8.8011 -0.9535 30 1 2.7205 3.9279 2.1546 31 1 0.7523 1.1276 2.4719 32 1 2.4241 0.5367 2.6271 33 1 1.8057 1.9480 4.4525 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396296280.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:30 Heat of formation + Delta-G solvation = -66.559807 kcal Electronic energy + Delta-G solvation = -16758.689078 eV Core-core repulsion = 14066.067793 eV Total energy + Delta-G solvation = -2692.621285 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.44652 -37.82283 -36.79188 -35.68257 -33.63395 -31.48539 -30.11405 -28.43468 -25.72236 -24.60078 -22.78388 -22.49203 -20.21262 -19.78868 -18.25616 -17.48300 -16.99352 -16.13177 -15.92654 -15.68098 -15.44036 -14.88563 -14.37665 -14.23905 -14.13621 -13.95830 -13.66615 -13.35229 -13.13155 -12.93993 -12.65432 -12.32821 -12.02852 -11.99824 -11.87706 -11.55195 -11.44461 -11.20202 -10.90423 -10.69451 -10.10412 -9.05698 -8.91259 -8.22124 -6.56459 0.31397 0.71364 1.32328 1.33823 1.43380 1.51034 1.84185 1.91017 2.13442 2.82837 3.24121 3.50466 4.01759 4.08892 4.28960 4.36176 4.52116 4.55653 4.67522 4.81975 4.84572 4.88040 4.89813 5.08616 5.19066 5.21806 5.40872 5.44436 5.47881 5.55451 5.78091 5.91365 5.95905 6.08347 6.35414 6.51379 6.54975 7.05787 7.94912 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.035386 B = 0.005263 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.094033 B = 5318.929916 C = 6007.860011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.078 4.078 3 C -0.058 4.058 4 C -0.165 4.165 5 C -0.006 4.006 6 C -0.397 4.397 7 C 0.029 3.971 8 C -0.416 4.416 9 H 0.103 0.897 10 C 0.016 3.984 11 N -0.800 5.800 12 Si 1.016 2.984 13 H -0.254 1.254 14 H -0.258 1.258 15 H -0.254 1.254 16 S 0.110 5.890 17 C -0.295 4.295 18 C -0.045 4.045 19 C -0.168 4.168 20 C 0.139 3.861 21 O -0.592 6.592 22 H 0.041 0.959 23 H 0.081 0.919 24 H 0.054 0.946 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.115 0.885 28 H 0.102 0.898 29 H 0.312 0.688 30 H 0.110 0.890 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.682 -7.862 4.467 9.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.115 4.115 3 C -0.060 4.060 4 C -0.185 4.185 5 C -0.014 4.014 6 C -0.422 4.422 7 C -0.090 4.090 8 C -0.449 4.449 9 H 0.121 0.879 10 C -0.203 4.203 11 N -0.427 5.427 12 Si 0.833 3.167 13 H -0.178 1.178 14 H -0.182 1.182 15 H -0.178 1.178 16 S 0.369 5.631 17 C -0.409 4.409 18 C -0.068 4.068 19 C -0.170 4.170 20 C 0.062 3.938 21 O -0.400 6.400 22 H 0.060 0.940 23 H 0.100 0.900 24 H 0.073 0.927 25 H 0.092 0.908 26 H 0.106 0.894 27 H 0.133 0.867 28 H 0.120 0.880 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -3.111 -6.088 5.062 8.507 hybrid contribution -0.148 -0.738 -1.126 1.354 sum -3.258 -6.826 3.937 8.527 Atomic orbital electron populations 1.21719 0.93958 1.02563 1.01625 1.20574 0.96794 0.90603 1.03515 1.19201 0.98475 0.97127 0.91244 1.20591 1.06365 0.93427 0.98068 1.18329 0.96344 0.94635 0.92070 1.19744 1.28774 0.96434 0.97287 1.21777 0.95338 0.95916 0.96015 1.19660 1.33721 0.95965 0.95601 0.87928 1.27355 0.92803 1.01341 0.98780 1.68702 1.32174 1.24231 1.17547 0.84705 0.79668 0.75291 0.77011 1.17787 1.18174 1.17792 1.84522 1.69418 1.06337 1.02780 1.23894 1.15873 1.03694 0.97430 1.20159 0.97308 0.94853 0.94431 1.19463 1.08061 0.94557 0.94941 1.20771 0.99770 0.90385 0.82845 1.86472 1.90922 1.43977 1.18646 0.94019 0.89991 0.92689 0.90793 0.89395 0.86721 0.87978 0.87408 0.87198 0.91134 0.91186 0.75230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.88 71.98 0.71 -2.44 16 2 C -0.08 -2.00 5.54 29.85 0.17 -1.83 16 3 C -0.06 -2.17 5.08 -20.23 -0.10 -2.27 16 4 C -0.16 -7.29 9.63 22.64 0.22 -7.08 16 5 C -0.01 -0.33 5.86 -21.48 -0.13 -0.45 16 6 C -0.40 -22.14 10.14 22.34 0.23 -21.91 16 7 C 0.03 1.63 6.11 22.37 0.14 1.77 16 8 C -0.42 -21.94 9.27 23.15 0.21 -21.73 16 9 H 0.10 5.08 7.85 -2.91 -0.02 5.06 16 10 C 0.02 0.75 5.50 85.33 0.47 1.22 16 11 N -0.80 -39.21 10.58 21.87 0.23 -38.98 16 12 Si 1.02 34.89 29.56 68.60 2.03 36.92 16 13 H -0.25 -8.46 7.11 99.48 0.71 -7.76 16 14 H -0.26 -8.19 7.11 99.48 0.71 -7.48 16 15 H -0.25 -8.47 7.11 99.48 0.71 -7.76 16 16 S 0.11 5.97 20.13 -56.49 -1.14 4.84 16 17 C -0.29 -15.56 6.47 23.12 0.15 -15.41 16 18 C -0.05 -2.11 9.40 22.47 0.21 -1.90 16 19 C -0.17 -6.49 5.88 -19.82 -0.12 -6.61 16 20 C 0.14 3.83 6.21 71.24 0.44 4.27 16 21 O -0.59 -16.51 12.12 -148.98 -1.80 -18.31 16 22 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.05 1.21 6.76 -2.39 -0.02 1.20 16 25 H 0.07 1.79 8.01 -2.39 -0.02 1.77 16 26 H 0.09 1.86 6.81 -2.39 -0.02 1.84 16 27 H 0.11 4.61 8.03 -2.91 -0.02 4.59 16 28 H 0.10 5.47 8.06 -2.91 -0.02 5.44 16 29 H 0.31 13.48 8.29 -92.71 -0.77 12.71 16 30 H 0.11 5.04 6.97 -2.91 -0.02 5.02 16 31 H 0.07 1.62 6.73 -2.39 -0.02 1.60 16 32 H 0.07 1.59 7.49 -2.39 -0.02 1.57 16 33 H 0.40 6.11 9.12 -74.06 -0.68 5.43 16 Total: -1.00 -66.68 289.09 2.38 -64.31 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: 0.46 Total: 25.60 kcal Atomic # 6 Polarization: -76.97 SS G_CDS: 2.60 Total: -74.37 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.23 Total: -38.98 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -1.80 Total: -18.31 kcal Atomic # 14 Polarization: 34.89 SS G_CDS: 2.03 Total: 36.92 kcal Atomic # 16 Polarization: 5.97 SS G_CDS: -1.14 Total: 4.84 kcal Total: -66.68 2.38 -64.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396296280.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.255 kcal (2) G-P(sol) polarization free energy of solvation -66.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds