Wall clock time and date at job start Mon Mar 30 2020 06:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50692 * 109.47407 * 2 1 4 4 C 1.31736 * 124.25946 * 90.54553 * 3 2 1 5 5 C 1.45569 * 114.88244 * 180.11772 * 4 3 2 6 6 C 1.40646 * 129.14754 * 179.34446 * 5 4 3 7 7 C 1.39941 * 120.08175 * 180.02562 * 6 5 4 8 8 C 1.41258 * 120.03494 * 179.97438 * 7 6 5 9 9 H 1.07999 * 120.00276 * 154.48173 * 8 7 6 10 10 C 1.39824 * 119.99963 * 334.48822 * 8 7 6 11 11 N 1.30910 * 119.99853 * 342.43935 * 10 8 7 12 12 Si 1.86802 * 120.00327 * 162.44376 * 10 8 7 13 13 H 1.48500 * 109.47078 * 89.99804 * 12 10 8 14 14 H 1.48502 * 109.47278 * 209.99532 * 12 10 8 15 15 H 1.48500 * 109.46863 * 329.99590 * 12 10 8 16 16 C 1.41089 * 119.93165 * 359.97243 * 7 6 5 17 17 C 1.36102 * 120.05353 * 359.97438 * 16 7 6 18 18 O 1.35917 * 119.63452 * 180.02562 * 17 16 7 19 19 C 1.42898 * 117.00325 * 0.02562 * 18 17 16 20 20 C 1.40010 * 111.79564 * 359.53196 * 5 4 3 21 21 S 1.75266 * 124.25647 * 269.97531 * 3 2 1 22 22 H 1.09003 * 109.47670 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47318 * 300.00082 * 1 2 3 24 24 H 1.09003 * 109.47317 * 60.00057 * 1 2 3 25 25 H 1.09006 * 109.47352 * 239.99270 * 2 1 3 26 26 H 1.09007 * 109.46972 * 120.00321 * 2 1 3 27 27 H 1.08001 * 122.55642 * 359.45896 * 4 3 2 28 28 H 1.07998 * 119.95780 * 359.97438 * 6 5 4 29 29 H 0.97001 * 120.00266 * 180.02562 * 11 10 8 30 30 H 1.08000 * 119.97702 * 180.02562 * 16 7 6 31 31 H 1.08999 * 109.47614 * 180.02562 * 19 18 17 32 32 H 1.09006 * 109.47122 * 300.00038 * 19 18 17 33 33 H 1.09000 * 109.47123 * 59.99897 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2893 2.1164 1.0887 5 6 2.7634 3.4722 0.8516 6 6 3.1107 4.4671 1.7831 7 6 3.5485 5.7203 1.3404 8 6 3.8965 6.7190 2.2769 9 1 4.5948 7.4961 2.0033 10 6 3.3370 6.7014 3.5582 11 7 2.2587 5.9968 3.7919 12 14 4.1280 7.6833 4.9365 13 1 3.5438 9.0481 4.9702 14 1 3.8776 7.0056 6.2339 15 1 5.5912 7.7767 4.7010 16 6 3.6421 5.9853 -0.0422 17 6 3.3075 5.0232 -0.9448 18 8 3.4013 5.2875 -2.2747 19 6 3.8568 6.5898 -2.6468 20 6 2.8596 3.7575 -0.5157 21 16 2.3618 2.3506 -1.4486 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5140 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.1484 1.7153 2.0815 28 1 3.0385 4.2638 2.8413 29 1 1.8703 5.9848 4.6807 30 1 3.9803 6.9522 -0.3846 31 1 3.8850 6.6682 -3.7336 32 1 3.1761 7.3411 -2.2462 33 1 4.8564 6.7539 -2.2444 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396296564.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:50 Heat of formation + Delta-G solvation = -17.783651 kcal Electronic energy + Delta-G solvation = -16906.797023 eV Core-core repulsion = 14216.290831 eV Total energy + Delta-G solvation = -2690.506192 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.99888 -37.14382 -35.38607 -33.58003 -31.68528 -29.27358 -27.71181 -26.81183 -25.27535 -23.52022 -21.64725 -20.30603 -19.39173 -17.82859 -16.43722 -15.55806 -15.30623 -14.99576 -14.85021 -14.69040 -13.93716 -13.39780 -13.23137 -13.03767 -12.50765 -12.19377 -11.83257 -11.78031 -11.54820 -11.24628 -11.08832 -10.93178 -10.74332 -10.68246 -10.57596 -10.22156 -9.88689 -9.65849 -9.52296 -8.95453 -8.04294 -7.36245 -6.86906 -6.45689 -4.44533 1.88209 2.58777 2.66611 3.01623 3.03095 3.09611 3.14608 3.43194 3.84646 4.09834 4.48130 5.11884 5.32846 5.48694 5.56162 5.61175 5.69222 5.80003 5.87842 5.99433 6.09374 6.15604 6.27694 6.38797 6.58151 6.66945 6.81439 6.85659 7.05358 7.16749 7.36719 7.68332 7.79234 8.02863 8.20179 8.49492 8.74268 8.79655 10.07108 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.018496 B = 0.006988 C = 0.005227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.485447 B = 4005.977438 C = 5355.817426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.050 4.050 3 C -0.170 4.170 4 C -0.114 4.114 5 C -0.025 4.025 6 C -0.165 4.165 7 C 0.134 3.866 8 C -0.455 4.455 9 H 0.080 0.920 10 C 0.076 3.924 11 N -0.784 5.784 12 Si 0.909 3.091 13 H -0.269 1.269 14 H -0.275 1.275 15 H -0.260 1.260 16 C -0.271 4.271 17 C 0.171 3.829 18 O -0.332 6.332 19 C 0.035 3.965 20 C -0.249 4.249 21 S 0.020 5.980 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.128 0.872 28 H 0.124 0.876 29 H 0.283 0.717 30 H 0.110 0.890 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.341 -4.557 -4.086 6.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.089 4.089 3 C -0.285 4.285 4 C -0.145 4.145 5 C -0.031 4.031 6 C -0.188 4.188 7 C 0.130 3.870 8 C -0.485 4.485 9 H 0.098 0.902 10 C -0.143 4.143 11 N -0.409 5.409 12 Si 0.733 3.267 13 H -0.194 1.194 14 H -0.200 1.200 15 H -0.184 1.184 16 C -0.293 4.293 17 C 0.123 3.877 18 O -0.246 6.246 19 C -0.060 4.060 20 C -0.364 4.364 21 S 0.280 5.720 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.146 0.854 28 H 0.142 0.858 29 H 0.094 0.906 30 H 0.128 0.872 31 H 0.104 0.896 32 H 0.069 0.931 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.687 -5.078 -5.580 7.576 hybrid contribution 0.429 1.177 2.278 2.600 sum -0.257 -3.901 -3.302 5.117 Atomic orbital electron populations 1.21766 0.94887 1.01102 1.02612 1.20047 0.95831 0.90689 1.02338 1.23615 1.08114 0.99886 0.96845 1.20844 1.02116 0.93480 0.98099 1.18908 0.99637 0.93061 0.91459 1.21104 1.08217 0.91459 0.97971 1.17143 0.87776 0.91773 0.90279 1.19498 1.23177 1.10066 0.95731 0.90172 1.25924 0.93454 0.95038 0.99890 1.69867 1.14685 1.32978 1.23359 0.86291 0.80873 0.79892 0.79612 1.19414 1.19952 1.18352 1.20772 1.16279 0.98232 0.94021 1.17619 0.96963 0.91889 0.81199 1.85944 1.82813 1.33199 1.22676 1.22828 0.99067 0.83995 1.00122 1.21034 1.23280 0.96641 0.95416 1.83332 1.73976 1.06283 1.08451 0.92730 0.92367 0.92450 0.91367 0.90794 0.85420 0.85803 0.90625 0.87229 0.89589 0.93114 0.93198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.89 37.15 0.37 -1.51 16 2 C -0.05 -0.71 6.37 -27.89 -0.18 -0.89 16 3 C -0.17 -3.19 5.63 -36.19 -0.20 -3.39 16 4 C -0.11 -2.37 10.21 -38.54 -0.39 -2.77 16 5 C -0.02 -0.61 6.03 -105.40 -0.64 -1.25 16 6 C -0.17 -4.31 8.75 -38.04 -0.33 -4.64 16 7 C 0.13 3.53 5.55 -107.03 -0.59 2.94 16 8 C -0.46 -11.67 9.03 -37.84 -0.34 -12.01 16 9 H 0.08 1.95 7.90 -52.49 -0.41 1.54 16 10 C 0.08 1.84 5.12 -17.35 -0.09 1.76 16 11 N -0.78 -19.73 10.99 55.54 0.61 -19.12 16 12 Si 0.91 17.99 29.59 -169.99 -5.03 12.96 16 13 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 14 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 15 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 16 C -0.27 -6.61 8.69 -39.27 -0.34 -6.95 16 17 C 0.17 4.10 6.68 -39.32 -0.26 3.83 16 18 O -0.33 -7.06 10.47 -19.48 -0.20 -7.26 16 19 C 0.04 0.57 9.80 101.05 0.99 1.56 16 20 C -0.25 -6.04 6.46 -37.89 -0.24 -6.28 16 21 S 0.02 0.41 23.17 -107.50 -2.49 -2.08 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.13 2.40 8.06 -52.49 -0.42 1.97 16 28 H 0.12 3.29 6.17 -52.49 -0.32 2.97 16 29 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 30 H 0.11 2.42 6.16 -52.49 -0.32 2.10 16 31 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.05 0.80 7.63 -51.93 -0.40 0.40 16 33 H 0.05 0.77 7.63 -51.93 -0.40 0.37 16 LS Contribution 294.43 15.07 4.44 4.44 Total: -1.00 -28.29 294.43 -8.88 -37.17 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -3.95 Total: 3.50 kcal Atomic # 6 Polarization: -27.35 SS G_CDS: -2.26 Total: -29.60 kcal Atomic # 7 Polarization: -19.73 SS G_CDS: 0.61 Total: -19.12 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -0.20 Total: -7.26 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal Atomic # 16 Polarization: 0.41 SS G_CDS: -2.49 Total: -2.08 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.29 -8.88 -37.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396296564.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.389 kcal (2) G-P(sol) polarization free energy of solvation -28.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds