Wall clock time and date at job start Mon Mar 30 2020 06:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50692 * 109.47407 * 2 1 4 4 C 1.31736 * 124.25946 * 90.54553 * 3 2 1 5 5 C 1.45569 * 114.88244 * 180.11772 * 4 3 2 6 6 C 1.40646 * 129.14754 * 179.34446 * 5 4 3 7 7 C 1.39941 * 120.08175 * 180.02562 * 6 5 4 8 8 C 1.41258 * 120.03494 * 179.97438 * 7 6 5 9 9 H 1.07999 * 120.00276 * 154.48173 * 8 7 6 10 10 C 1.39824 * 119.99963 * 334.48822 * 8 7 6 11 11 N 1.30910 * 119.99853 * 342.43935 * 10 8 7 12 12 Si 1.86802 * 120.00327 * 162.44376 * 10 8 7 13 13 H 1.48500 * 109.47078 * 89.99804 * 12 10 8 14 14 H 1.48502 * 109.47278 * 209.99532 * 12 10 8 15 15 H 1.48500 * 109.46863 * 329.99590 * 12 10 8 16 16 C 1.41089 * 119.93165 * 359.97243 * 7 6 5 17 17 C 1.36102 * 120.05353 * 359.97438 * 16 7 6 18 18 O 1.35917 * 119.63452 * 180.02562 * 17 16 7 19 19 C 1.42898 * 117.00325 * 0.02562 * 18 17 16 20 20 C 1.40010 * 111.79564 * 359.53196 * 5 4 3 21 21 S 1.75266 * 124.25647 * 269.97531 * 3 2 1 22 22 H 1.09003 * 109.47670 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47318 * 300.00082 * 1 2 3 24 24 H 1.09003 * 109.47317 * 60.00057 * 1 2 3 25 25 H 1.09006 * 109.47352 * 239.99270 * 2 1 3 26 26 H 1.09007 * 109.46972 * 120.00321 * 2 1 3 27 27 H 1.08001 * 122.55642 * 359.45896 * 4 3 2 28 28 H 1.07998 * 119.95780 * 359.97438 * 6 5 4 29 29 H 0.97001 * 120.00266 * 180.02562 * 11 10 8 30 30 H 1.08000 * 119.97702 * 180.02562 * 16 7 6 31 31 H 1.08999 * 109.47614 * 180.02562 * 19 18 17 32 32 H 1.09006 * 109.47122 * 300.00038 * 19 18 17 33 33 H 1.09000 * 109.47123 * 59.99897 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2893 2.1164 1.0887 5 6 2.7634 3.4722 0.8516 6 6 3.1107 4.4671 1.7831 7 6 3.5485 5.7203 1.3404 8 6 3.8965 6.7190 2.2769 9 1 4.5948 7.4961 2.0033 10 6 3.3370 6.7014 3.5582 11 7 2.2587 5.9968 3.7919 12 14 4.1280 7.6833 4.9365 13 1 3.5438 9.0481 4.9702 14 1 3.8776 7.0056 6.2339 15 1 5.5912 7.7767 4.7010 16 6 3.6421 5.9853 -0.0422 17 6 3.3075 5.0232 -0.9448 18 8 3.4013 5.2875 -2.2747 19 6 3.8568 6.5898 -2.6468 20 6 2.8596 3.7575 -0.5157 21 16 2.3618 2.3506 -1.4486 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5140 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.1484 1.7153 2.0815 28 1 3.0385 4.2638 2.8413 29 1 1.8703 5.9848 4.6807 30 1 3.9803 6.9522 -0.3846 31 1 3.8850 6.6682 -3.7336 32 1 3.1761 7.3411 -2.2462 33 1 4.8564 6.7539 -2.2444 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396296564.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:50 Heat of formation + Delta-G solvation = -32.198047 kcal Electronic energy + Delta-G solvation = -16907.422078 eV Core-core repulsion = 14216.290831 eV Total energy + Delta-G solvation = -2691.131247 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.72746 -38.80305 -37.02049 -35.23691 -33.25857 -30.99611 -29.36625 -28.37071 -27.01508 -24.86993 -23.40337 -21.95787 -21.01558 -19.57332 -18.19452 -17.23963 -17.08970 -16.56327 -16.46068 -16.21507 -15.31239 -15.02597 -14.61560 -14.55210 -14.07307 -13.87234 -13.38416 -13.23540 -13.09387 -12.80977 -12.59819 -12.45831 -12.16554 -12.15424 -12.04259 -11.85791 -11.56104 -11.41502 -11.25526 -10.73238 -9.77511 -9.16526 -8.68832 -8.22868 -6.37167 0.16412 0.84451 0.95766 1.38201 1.40952 1.43974 1.53856 1.69841 2.18620 2.52858 2.64392 3.58624 3.77966 4.25603 4.28714 4.39859 4.40064 4.46553 4.57680 4.61024 4.70221 4.88359 4.92116 4.96658 5.00605 5.08541 5.21754 5.26734 5.37275 5.42459 5.53097 5.84383 5.92868 6.12827 6.41471 6.62832 6.83557 6.92480 8.27687 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.018496 B = 0.006988 C = 0.005227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.485447 B = 4005.977438 C = 5355.817426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.051 4.051 3 C -0.142 4.142 4 C -0.147 4.147 5 C -0.034 4.034 6 C -0.199 4.199 7 C 0.109 3.891 8 C -0.487 4.487 9 H 0.083 0.917 10 C 0.036 3.964 11 N -0.816 5.816 12 Si 0.986 3.014 13 H -0.260 1.260 14 H -0.266 1.266 15 H -0.257 1.257 16 C -0.288 4.288 17 C 0.170 3.830 18 O -0.341 6.341 19 C 0.026 3.974 20 C -0.285 4.285 21 S 0.045 5.955 22 H 0.086 0.914 23 H 0.048 0.952 24 H 0.049 0.951 25 H 0.087 0.913 26 H 0.095 0.905 27 H 0.144 0.856 28 H 0.108 0.892 29 H 0.291 0.709 30 H 0.124 0.876 31 H 0.126 0.874 32 H 0.051 0.949 33 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.471 -5.529 -4.580 7.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.090 4.090 3 C -0.258 4.258 4 C -0.178 4.178 5 C -0.040 4.040 6 C -0.222 4.222 7 C 0.105 3.895 8 C -0.516 4.516 9 H 0.101 0.899 10 C -0.180 4.180 11 N -0.441 5.441 12 Si 0.806 3.194 13 H -0.185 1.185 14 H -0.190 1.190 15 H -0.181 1.181 16 C -0.309 4.309 17 C 0.121 3.879 18 O -0.255 6.255 19 C -0.068 4.068 20 C -0.399 4.399 21 S 0.305 5.695 22 H 0.105 0.895 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.105 0.895 26 H 0.113 0.887 27 H 0.161 0.839 28 H 0.126 0.874 29 H 0.101 0.899 30 H 0.142 0.858 31 H 0.144 0.856 32 H 0.070 0.930 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.819 -6.046 -6.102 8.629 hybrid contribution 0.422 1.398 2.254 2.686 sum -0.397 -4.648 -3.848 6.047 Atomic orbital electron populations 1.21756 0.93527 1.03023 1.01795 1.20284 0.96830 0.87576 1.04337 1.24230 1.04851 1.01481 0.95200 1.20938 1.04592 0.92510 0.99756 1.19322 0.98711 0.94362 0.91608 1.21022 1.11119 0.92473 0.97558 1.17521 0.88270 0.92259 0.91468 1.19786 1.24167 1.10582 0.97075 0.89856 1.26816 0.93448 0.95929 1.01831 1.69931 1.15753 1.34078 1.24344 0.85155 0.79680 0.78428 0.76184 1.18488 1.19049 1.18093 1.20932 1.17131 0.99261 0.93616 1.17773 0.95944 0.91836 0.82305 1.85923 1.82772 1.35872 1.20978 1.23195 0.99165 0.81845 1.02620 1.21516 1.23725 0.98323 0.96338 1.83119 1.73268 1.04540 1.08620 0.89484 0.93298 0.93216 0.89471 0.88658 0.83864 0.87425 0.89871 0.85843 0.85566 0.92993 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 9.89 71.98 0.71 -2.52 16 2 C -0.05 -1.28 6.37 29.84 0.19 -1.09 16 3 C -0.14 -5.12 5.63 24.97 0.14 -4.98 16 4 C -0.15 -6.14 10.21 23.45 0.24 -5.90 16 5 C -0.03 -1.71 6.03 -20.37 -0.12 -1.83 16 6 C -0.20 -10.95 8.75 23.27 0.20 -10.75 16 7 C 0.11 5.99 5.55 -21.42 -0.12 5.87 16 8 C -0.49 -25.92 9.03 23.40 0.21 -25.71 16 9 H 0.08 4.19 7.90 -2.91 -0.02 4.17 16 10 C 0.04 1.79 5.12 85.21 0.44 2.23 16 11 N -0.82 -42.41 10.99 21.81 0.24 -42.17 16 12 Si 0.99 37.20 29.59 68.60 2.03 39.23 16 13 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 14 H -0.27 -9.58 7.11 99.48 0.71 -8.88 16 15 H -0.26 -9.51 7.11 99.48 0.71 -8.81 16 16 C -0.29 -14.51 8.69 22.47 0.20 -14.31 16 17 C 0.17 8.28 6.68 22.44 0.15 8.43 16 18 O -0.34 -14.35 10.47 -92.62 -0.97 -15.32 16 19 C 0.03 0.81 9.80 113.37 1.11 1.92 16 20 C -0.28 -14.00 6.46 23.36 0.15 -13.85 16 21 S 0.04 1.79 23.17 -56.49 -1.31 0.48 16 22 H 0.09 1.43 8.14 -2.39 -0.02 1.42 16 23 H 0.05 1.19 8.14 -2.39 -0.02 1.18 16 24 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 26 H 0.10 2.08 8.14 -2.38 -0.02 2.06 16 27 H 0.14 5.38 8.06 -2.91 -0.02 5.36 16 28 H 0.11 6.10 6.17 -2.91 -0.02 6.08 16 29 H 0.29 13.56 8.30 -92.71 -0.77 12.79 16 30 H 0.12 5.61 6.16 -2.91 -0.02 5.60 16 31 H 0.13 2.86 8.14 -2.39 -0.02 2.84 16 32 H 0.05 1.59 7.63 -2.38 -0.02 1.58 16 33 H 0.05 1.66 7.63 -2.39 -0.02 1.64 16 Total: -1.00 -63.48 294.43 4.61 -58.88 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 1.12 Total: 21.40 kcal Atomic # 6 Polarization: -65.99 SS G_CDS: 3.50 Total: -62.49 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: 0.24 Total: -42.17 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.97 Total: -15.32 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 2.03 Total: 39.23 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -1.31 Total: 0.48 kcal Total: -63.48 4.61 -58.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396296564.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.679 kcal (2) G-P(sol) polarization free energy of solvation -63.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds