Wall clock time and date at job start Mon Mar 30 2020 06:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.47153 * 2 1 4 4 C 1.42005 * 119.56674 * 89.02755 * 3 2 1 5 5 C 1.40444 * 128.62966 * 359.97438 * 4 3 2 6 6 C 1.32534 * 115.87763 * 180.02562 * 5 4 3 7 7 S 1.75476 * 110.83934 * 359.97438 * 6 5 4 8 8 C 1.40342 * 119.00928 * 179.97438 * 4 3 2 9 9 C 1.38878 * 120.16575 * 359.71823 * 8 4 3 10 10 C 1.40354 * 119.96676 * 0.55815 * 9 8 4 11 11 C 1.41003 * 120.20222 * 179.71941 * 10 9 8 12 12 H 1.07994 * 120.00024 * 149.45798 * 11 10 9 13 13 C 1.39879 * 119.99739 * 329.18456 * 11 10 9 14 14 N 1.30895 * 119.99814 * 162.34656 * 13 11 10 15 15 Si 1.86798 * 120.00304 * 342.34496 * 13 11 10 16 16 H 1.48500 * 109.47141 * 95.23066 * 15 13 11 17 17 H 1.48494 * 109.47439 * 215.22925 * 15 13 11 18 18 H 1.48503 * 109.46859 * 335.23370 * 15 13 11 19 19 C 1.35187 * 119.56263 * 269.00761 * 3 2 1 20 20 C 1.50695 * 119.80822 * 0.04481 * 19 3 2 21 21 O 1.42907 * 109.47181 * 270.85852 * 20 19 3 22 22 H 1.08990 * 109.47213 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47194 * 300.00251 * 1 2 3 24 24 H 1.09001 * 109.47465 * 59.99932 * 1 2 3 25 25 H 1.08995 * 109.46773 * 240.00139 * 2 1 3 26 26 H 1.08995 * 109.46990 * 119.99577 * 2 1 3 27 27 H 1.07999 * 122.06370 * 359.97358 * 5 4 3 28 28 H 1.07998 * 124.57941 * 179.97438 * 6 5 4 29 29 H 1.08004 * 120.01392 * 180.29773 * 9 8 4 30 30 H 0.97001 * 119.99474 * 180.02562 * 14 13 11 31 31 H 1.09003 * 109.47083 * 30.85255 * 20 19 3 32 32 H 1.08994 * 109.47578 * 150.86067 * 20 19 3 33 33 H 0.96696 * 114.00415 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2462 2.0885 1.2350 5 6 2.0510 1.6042 2.5387 6 6 2.3323 2.4511 3.5186 7 16 2.8878 3.9867 2.8761 8 6 2.7147 3.4113 1.2213 9 6 2.9688 4.0492 0.0142 10 6 2.7457 3.3743 -1.1960 11 6 2.9964 4.0192 -2.4246 12 1 3.3083 3.4431 -3.2831 13 6 2.8357 5.4045 -2.5328 14 7 3.3824 6.0508 -3.5312 15 14 1.8409 6.3322 -1.2526 16 1 2.7542 6.8805 -0.2179 17 1 1.1084 7.4461 -1.9066 18 1 0.8693 5.4075 -0.6153 19 6 2.2739 2.0429 -1.1757 20 6 2.0382 1.3119 -2.4722 21 8 3.2273 0.6146 -2.8490 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5137 0.8900 27 1 1.6928 0.6036 2.7311 28 1 2.2331 2.2265 4.5703 29 1 3.3339 5.0656 0.0066 30 1 3.2713 7.0115 -3.6059 31 1 1.2239 0.5986 -2.3443 32 1 1.7750 2.0281 -3.2506 33 1 3.1481 0.1203 -3.6762 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396297009.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:23 Heat of formation + Delta-G solvation = -28.197728 kcal Electronic energy + Delta-G solvation = -17583.956914 eV Core-core repulsion = 14892.999133 eV Total energy + Delta-G solvation = -2690.957780 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.14993 -36.27962 -34.92761 -33.94233 -32.80442 -29.70132 -28.95066 -26.05222 -24.45181 -23.17509 -21.90534 -20.40368 -18.88631 -17.29322 -16.77755 -16.73447 -15.63377 -15.05139 -14.53210 -13.90647 -13.65726 -13.32626 -13.02427 -12.88264 -12.67921 -12.36140 -12.23417 -11.91867 -11.60187 -11.49036 -10.98746 -10.86230 -10.64881 -10.57954 -10.23526 -10.00198 -9.90703 -9.44411 -9.32781 -9.13545 -8.53733 -7.48180 -7.17912 -6.84990 -4.65303 1.71269 2.33489 2.49696 2.89576 2.96534 3.09306 3.17747 3.34108 3.85877 4.27370 4.92753 5.35421 5.37445 5.48075 5.63324 5.77335 5.87942 5.93199 6.00497 6.10343 6.20433 6.21070 6.24524 6.48754 6.58003 6.62802 6.78998 6.82043 6.91769 7.14820 7.45427 7.50278 7.64308 7.82473 8.10395 8.24455 8.41841 8.56125 9.81181 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.015169 B = 0.011069 C = 0.007145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.426406 B = 2528.902473 C = 3917.627666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 C 0.013 3.987 4 C -0.207 4.207 5 C -0.068 4.068 6 C -0.265 4.265 7 S -0.001 6.001 8 C -0.046 4.046 9 C -0.236 4.236 10 C 0.123 3.877 11 C -0.416 4.416 12 H 0.102 0.898 13 C 0.083 3.917 14 N -0.788 5.788 15 Si 0.908 3.092 16 H -0.266 1.266 17 H -0.287 1.287 18 H -0.240 1.240 19 C -0.158 4.158 20 C 0.130 3.870 21 O -0.567 6.567 22 H 0.049 0.951 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.121 0.879 28 H 0.146 0.854 29 H 0.106 0.894 30 H 0.290 0.710 31 H 0.038 0.962 32 H 0.057 0.943 33 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.776 -6.425 4.113 9.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.125 4.125 3 C 0.010 3.990 4 C -0.212 4.212 5 C -0.097 4.097 6 C -0.397 4.397 7 S 0.259 5.741 8 C -0.161 4.161 9 C -0.262 4.262 10 C 0.116 3.884 11 C -0.443 4.443 12 H 0.120 0.880 13 C -0.139 4.139 14 N -0.410 5.410 15 Si 0.734 3.266 16 H -0.192 1.192 17 H -0.214 1.214 18 H -0.163 1.163 19 C -0.160 4.160 20 C 0.053 3.947 21 O -0.371 6.371 22 H 0.068 0.932 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.139 0.861 28 H 0.164 0.836 29 H 0.123 0.877 30 H 0.101 0.899 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -4.052 -4.657 5.232 8.092 hybrid contribution -0.907 -0.834 -0.560 1.353 sum -4.959 -5.491 4.672 8.750 Atomic orbital electron populations 1.21726 0.95398 1.00680 1.02271 1.20576 0.95556 0.94150 1.02238 1.18952 0.95378 0.93521 0.91107 1.17539 1.16456 0.94592 0.92625 1.19710 0.99487 0.99102 0.91433 1.24475 1.15980 0.97645 1.01643 1.83722 1.73944 1.17146 0.99312 1.22235 1.01682 0.96831 0.95360 1.20189 1.15516 1.00681 0.89861 1.17378 0.87731 0.91008 0.92246 1.19590 1.35593 0.92043 0.97103 0.87976 1.26295 0.93665 0.97921 0.96004 1.69712 1.31646 1.10939 1.28699 0.86301 0.81353 0.78959 0.80010 1.19184 1.21437 1.16332 1.18938 1.08833 0.95906 0.92302 1.20841 0.85747 0.93249 0.94863 1.86655 1.37817 1.68436 1.44157 0.93158 0.92646 0.92605 0.90920 0.91801 0.86094 0.83585 0.87671 0.89918 0.94399 0.92443 0.79169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.74 37.16 0.36 -1.69 16 2 C -0.09 -1.45 5.13 -27.88 -0.14 -1.60 16 3 C 0.01 0.27 5.15 -104.26 -0.54 -0.27 16 4 C -0.21 -4.52 5.85 -106.83 -0.62 -5.14 16 5 C -0.07 -1.28 9.55 -40.66 -0.39 -1.66 16 6 C -0.26 -4.79 11.09 28.82 0.32 -4.47 16 7 S 0.00 -0.03 23.29 -107.50 -2.50 -2.53 16 8 C -0.05 -1.08 6.46 -38.55 -0.25 -1.33 16 9 C -0.24 -5.88 7.18 -38.55 -0.28 -6.16 16 10 C 0.12 3.07 5.08 -106.90 -0.54 2.52 16 11 C -0.42 -10.69 8.50 -37.92 -0.32 -11.01 16 12 H 0.10 2.73 7.20 -52.49 -0.38 2.35 16 13 C 0.08 2.09 5.40 -17.34 -0.09 1.99 16 14 N -0.79 -19.91 13.93 55.54 0.77 -19.14 16 15 Si 0.91 20.47 24.53 -169.99 -4.17 16.30 16 16 H -0.27 -5.98 6.72 56.52 0.38 -5.60 16 17 H -0.29 -6.15 7.11 56.52 0.40 -5.74 16 18 H -0.24 -5.62 6.87 56.52 0.39 -5.23 16 19 C -0.16 -3.57 5.51 -104.56 -0.58 -4.14 16 20 C 0.13 2.47 5.70 36.00 0.21 2.68 16 21 O -0.57 -10.53 13.52 -35.23 -0.48 -11.00 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.05 0.81 7.40 -51.93 -0.38 0.42 16 25 H 0.07 1.17 6.44 -51.93 -0.33 0.84 16 26 H 0.06 0.99 7.16 -51.93 -0.37 0.62 16 27 H 0.12 1.94 7.36 -52.49 -0.39 1.55 16 28 H 0.15 2.18 8.06 -52.49 -0.42 1.75 16 29 H 0.11 2.64 4.80 -52.48 -0.25 2.38 16 30 H 0.29 6.63 8.30 -40.82 -0.34 6.29 16 31 H 0.04 0.62 5.75 -51.93 -0.30 0.32 16 32 H 0.06 1.12 6.79 -51.93 -0.35 0.77 16 33 H 0.36 4.66 9.12 45.56 0.42 5.08 16 LS Contribution 280.97 15.07 4.23 4.23 Total: -1.00 -28.27 280.97 -7.79 -36.06 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -2.78 Total: 6.35 kcal Atomic # 6 Polarization: -27.41 SS G_CDS: -2.87 Total: -30.27 kcal Atomic # 7 Polarization: -19.91 SS G_CDS: 0.77 Total: -19.14 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: -0.48 Total: -11.00 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.17 Total: 16.30 kcal Atomic # 16 Polarization: -0.03 SS G_CDS: -2.50 Total: -2.53 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.27 -7.79 -36.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396297009.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.858 kcal (2) G-P(sol) polarization free energy of solvation -28.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds