Wall clock time and date at job start Mon Mar 30 2020 06:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.47153 * 2 1 4 4 C 1.42005 * 119.56674 * 89.02755 * 3 2 1 5 5 C 1.40444 * 128.62966 * 359.97438 * 4 3 2 6 6 C 1.32534 * 115.87763 * 180.02562 * 5 4 3 7 7 S 1.75476 * 110.83934 * 359.97438 * 6 5 4 8 8 C 1.40342 * 119.00928 * 179.97438 * 4 3 2 9 9 C 1.38878 * 120.16575 * 359.71823 * 8 4 3 10 10 C 1.40354 * 119.96676 * 0.55815 * 9 8 4 11 11 C 1.41003 * 120.20222 * 179.71941 * 10 9 8 12 12 H 1.07994 * 120.00024 * 149.45798 * 11 10 9 13 13 C 1.39879 * 119.99739 * 329.18456 * 11 10 9 14 14 N 1.30895 * 119.99814 * 162.34656 * 13 11 10 15 15 Si 1.86798 * 120.00304 * 342.34496 * 13 11 10 16 16 H 1.48500 * 109.47141 * 95.23066 * 15 13 11 17 17 H 1.48494 * 109.47439 * 215.22925 * 15 13 11 18 18 H 1.48503 * 109.46859 * 335.23370 * 15 13 11 19 19 C 1.35187 * 119.56263 * 269.00761 * 3 2 1 20 20 C 1.50695 * 119.80822 * 0.04481 * 19 3 2 21 21 O 1.42907 * 109.47181 * 270.85852 * 20 19 3 22 22 H 1.08990 * 109.47213 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47194 * 300.00251 * 1 2 3 24 24 H 1.09001 * 109.47465 * 59.99932 * 1 2 3 25 25 H 1.08995 * 109.46773 * 240.00139 * 2 1 3 26 26 H 1.08995 * 109.46990 * 119.99577 * 2 1 3 27 27 H 1.07999 * 122.06370 * 359.97358 * 5 4 3 28 28 H 1.07998 * 124.57941 * 179.97438 * 6 5 4 29 29 H 1.08004 * 120.01392 * 180.29773 * 9 8 4 30 30 H 0.97001 * 119.99474 * 180.02562 * 14 13 11 31 31 H 1.09003 * 109.47083 * 30.85255 * 20 19 3 32 32 H 1.08994 * 109.47578 * 150.86067 * 20 19 3 33 33 H 0.96696 * 114.00415 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2462 2.0885 1.2350 5 6 2.0510 1.6042 2.5387 6 6 2.3323 2.4511 3.5186 7 16 2.8878 3.9867 2.8761 8 6 2.7147 3.4113 1.2213 9 6 2.9688 4.0492 0.0142 10 6 2.7457 3.3743 -1.1960 11 6 2.9964 4.0192 -2.4246 12 1 3.3083 3.4431 -3.2831 13 6 2.8357 5.4045 -2.5328 14 7 3.3824 6.0508 -3.5312 15 14 1.8409 6.3322 -1.2526 16 1 2.7542 6.8805 -0.2179 17 1 1.1084 7.4461 -1.9066 18 1 0.8693 5.4075 -0.6153 19 6 2.2739 2.0429 -1.1757 20 6 2.0382 1.3119 -2.4722 21 8 3.2273 0.6146 -2.8490 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5137 0.8900 27 1 1.6928 0.6036 2.7311 28 1 2.2331 2.2265 4.5703 29 1 3.3339 5.0656 0.0066 30 1 3.2713 7.0115 -3.6059 31 1 1.2239 0.5986 -2.3443 32 1 1.7750 2.0281 -3.2506 33 1 3.1481 0.1203 -3.6762 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396297009.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:23 Heat of formation + Delta-G solvation = -46.515457 kcal Electronic energy + Delta-G solvation = -17584.751230 eV Core-core repulsion = 14892.999133 eV Total energy + Delta-G solvation = -2691.752097 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.79856 -37.80051 -36.62876 -35.41914 -34.50200 -31.33695 -30.50132 -27.68366 -26.13126 -24.60022 -23.52089 -22.02740 -20.48670 -19.08450 -18.42117 -18.20754 -17.19963 -16.83867 -16.17972 -15.32045 -15.19677 -14.87812 -14.71013 -14.39684 -14.27973 -13.98361 -13.70972 -13.36058 -13.29875 -12.92722 -12.61657 -12.57599 -12.19583 -11.92356 -11.90436 -11.69209 -11.52836 -11.10958 -11.00435 -10.69018 -10.18336 -9.21742 -9.03610 -8.49302 -6.55102 0.07202 0.59029 0.84048 1.15769 1.24618 1.31751 1.37210 1.62994 2.03740 2.51545 3.21261 3.85192 3.94005 4.19969 4.25200 4.36286 4.45729 4.46984 4.60981 4.74827 4.76936 4.79720 4.88451 5.05927 5.08205 5.17022 5.20747 5.25816 5.45753 5.49570 5.67456 5.85834 5.91714 6.09660 6.21388 6.58326 6.71268 7.06867 8.02026 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.015169 B = 0.011069 C = 0.007145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.426406 B = 2528.902473 C = 3917.627666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.084 4.084 3 C 0.006 3.994 4 C -0.201 4.201 5 C -0.083 4.083 6 C -0.235 4.235 7 S 0.005 5.995 8 C -0.086 4.086 9 C -0.259 4.259 10 C 0.105 3.895 11 C -0.449 4.449 12 H 0.076 0.924 13 C 0.057 3.943 14 N -0.827 5.827 15 Si 0.953 3.047 16 H -0.271 1.271 17 H -0.268 1.268 18 H -0.257 1.257 19 C -0.178 4.178 20 C 0.137 3.863 21 O -0.585 6.585 22 H 0.083 0.917 23 H 0.051 0.949 24 H 0.048 0.952 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.160 0.840 28 H 0.190 0.810 29 H 0.091 0.909 30 H 0.298 0.702 31 H 0.072 0.928 32 H 0.042 0.958 33 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.214 -8.870 6.892 12.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.121 4.121 3 C 0.004 3.996 4 C -0.208 4.208 5 C -0.112 4.112 6 C -0.367 4.367 7 S 0.265 5.735 8 C -0.201 4.201 9 C -0.285 4.285 10 C 0.100 3.900 11 C -0.478 4.478 12 H 0.094 0.906 13 C -0.161 4.161 14 N -0.451 5.451 15 Si 0.778 3.222 16 H -0.197 1.197 17 H -0.194 1.194 18 H -0.181 1.181 19 C -0.180 4.180 20 C 0.061 3.939 21 O -0.393 6.393 22 H 0.102 0.898 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.096 0.904 26 H 0.099 0.901 27 H 0.177 0.823 28 H 0.207 0.793 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.060 0.940 33 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -5.488 -7.099 7.983 12.010 hybrid contribution -0.456 -0.287 -1.114 1.237 sum -5.944 -7.386 6.870 11.708 Atomic orbital electron populations 1.21701 0.93408 1.02706 1.01776 1.20646 0.97081 0.90977 1.03393 1.19476 0.94164 0.95770 0.90165 1.18148 1.14154 0.93876 0.94576 1.19981 1.00294 1.01114 0.89776 1.25072 1.12490 0.95528 1.03656 1.83743 1.73584 1.18842 0.97345 1.22604 1.02791 0.98133 0.96527 1.20186 1.16878 1.00482 0.90951 1.17613 0.88002 0.92512 0.91914 1.19449 1.38895 0.92500 0.96956 0.90560 1.26714 0.94058 0.98204 0.97074 1.69721 1.33625 1.11584 1.30201 0.85626 0.79996 0.78196 0.78400 1.19669 1.19427 1.18096 1.19390 1.08519 0.95419 0.94675 1.20738 0.86662 0.93543 0.92996 1.86569 1.37934 1.68746 1.46012 0.89845 0.93007 0.93334 0.90384 0.90051 0.82277 0.79296 0.89118 0.89152 0.91033 0.94019 0.76292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 9.74 71.98 0.70 -2.68 16 2 C -0.08 -2.45 5.13 29.85 0.15 -2.30 16 3 C 0.01 0.26 5.15 -19.63 -0.10 0.16 16 4 C -0.20 -8.33 5.85 -21.30 -0.12 -8.46 16 5 C -0.08 -2.73 9.55 21.66 0.21 -2.52 16 6 C -0.23 -7.33 11.09 66.68 0.74 -6.59 16 7 S 0.00 0.17 23.29 -56.49 -1.32 -1.14 16 8 C -0.09 -3.96 6.46 22.94 0.15 -3.81 16 9 C -0.26 -13.31 7.18 22.94 0.16 -13.14 16 10 C 0.11 5.47 5.08 -21.34 -0.11 5.36 16 11 C -0.45 -24.62 8.50 23.35 0.20 -24.42 16 12 H 0.08 4.42 7.20 -2.91 -0.02 4.39 16 13 C 0.06 3.04 5.40 85.23 0.46 3.50 16 14 N -0.83 -44.13 13.93 21.82 0.30 -43.83 16 15 Si 0.95 44.06 24.53 68.60 1.68 45.75 16 16 H -0.27 -12.48 6.72 99.48 0.67 -11.81 16 17 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 18 H -0.26 -12.37 6.87 99.48 0.68 -11.69 16 19 C -0.18 -8.07 5.51 -19.82 -0.11 -8.17 16 20 C 0.14 5.22 5.70 71.23 0.41 5.62 16 21 O -0.58 -21.47 13.52 -148.98 -2.01 -23.49 16 22 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 24 H 0.05 1.25 7.40 -2.39 -0.02 1.23 16 25 H 0.08 2.23 6.44 -2.39 -0.02 2.21 16 26 H 0.08 2.11 7.16 -2.39 -0.02 2.09 16 27 H 0.16 4.08 7.36 -2.91 -0.02 4.05 16 28 H 0.19 4.32 8.06 -2.91 -0.02 4.30 16 29 H 0.09 4.78 4.80 -2.91 -0.01 4.76 16 30 H 0.30 14.28 8.30 -92.71 -0.77 13.51 16 31 H 0.07 2.19 5.75 -2.39 -0.01 2.18 16 32 H 0.04 1.70 6.79 -2.39 -0.02 1.68 16 33 H 0.39 9.58 9.12 -74.06 -0.68 8.90 16 Total: -1.00 -64.01 280.97 1.81 -62.20 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 0.42 Total: 17.97 kcal Atomic # 6 Polarization: -60.19 SS G_CDS: 2.73 Total: -57.45 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: 0.30 Total: -43.83 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -2.01 Total: -23.49 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.68 Total: 45.75 kcal Atomic # 16 Polarization: 0.17 SS G_CDS: -1.32 Total: -1.14 kcal Total: -64.01 1.81 -62.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396297009.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.685 kcal (2) G-P(sol) polarization free energy of solvation -64.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds