Wall clock time and date at job start Mon Mar 30 2020 06:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50704 * 109.47182 * 2 1 4 4 C 1.31898 * 124.35251 * 89.72296 * 3 2 1 5 5 C 1.45457 * 114.88696 * 179.80808 * 4 3 2 6 6 C 1.41620 * 129.04097 * 180.19357 * 5 4 3 7 7 C 1.37382 * 121.02782 * 180.28428 * 6 5 4 8 8 C 1.38662 * 120.68817 * 359.97438 * 7 6 5 9 9 O 1.35656 * 120.14301 * 180.02562 * 8 7 6 10 10 C 1.42898 * 116.99562 * 0.02562 * 9 8 7 11 11 C 1.40963 * 119.71594 * 0.04580 * 8 7 6 12 12 C 1.40757 * 120.14539 * 180.02562 * 11 8 7 13 13 H 1.07996 * 120.00056 * 38.71131 * 12 11 8 14 14 C 1.39862 * 119.99970 * 218.72247 * 12 11 8 15 15 N 1.30952 * 120.00067 * 21.08211 * 14 12 11 16 16 Si 1.86802 * 120.00089 * 201.08834 * 14 12 11 17 17 H 1.48503 * 109.46923 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47259 * 119.99423 * 16 14 12 19 19 H 1.48504 * 109.47104 * 239.99767 * 16 14 12 20 20 C 1.39252 * 111.85648 * 0.46479 * 5 4 3 21 21 S 1.75306 * 124.34984 * 270.02063 * 3 2 1 22 22 H 1.09001 * 109.46884 * 60.00056 * 1 2 3 23 23 H 1.08996 * 109.47308 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47194 * 300.00486 * 1 2 3 25 25 H 1.09008 * 109.46638 * 119.99288 * 2 1 3 26 26 H 1.08999 * 109.47194 * 239.99514 * 2 1 3 27 27 H 1.08004 * 122.55374 * 359.97283 * 4 3 2 28 28 H 1.07999 * 119.48391 * 0.26823 * 6 5 4 29 29 H 1.07995 * 119.65322 * 180.02562 * 7 6 5 30 30 H 1.09001 * 109.47142 * 299.99590 * 10 9 8 31 31 H 1.08997 * 109.47473 * 60.00403 * 10 9 8 32 32 H 1.09006 * 109.46466 * 179.97438 * 10 9 8 33 33 H 0.97002 * 119.99635 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2756 2.1243 1.0889 5 6 2.7591 3.4751 0.8497 6 6 3.1130 4.4751 1.7880 7 6 3.5497 5.7106 1.3754 8 6 3.6555 6.0093 0.0255 9 8 4.0885 7.2327 -0.3696 10 6 4.4198 8.1671 0.6595 11 6 3.3107 5.0364 -0.9346 12 6 3.4151 5.3298 -2.3072 13 1 4.2443 5.9176 -2.6723 14 6 2.4448 4.8602 -3.1985 15 7 1.2594 4.5216 -2.7570 16 14 2.8400 4.7160 -5.0185 17 1 4.2371 5.1587 -5.2583 18 1 2.6877 3.3025 -5.4476 19 1 1.9093 5.5726 -5.7965 20 6 2.8582 3.7571 -0.5103 21 16 2.3617 2.3536 -1.4473 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.8934 -0.5139 -0.8899 27 1 2.1294 1.7266 2.0824 28 1 3.0382 4.2632 2.8444 29 1 3.8142 6.4566 2.1101 30 1 3.5417 8.3529 1.2780 31 1 5.2196 7.7588 1.2773 32 1 4.7512 9.1023 0.2081 33 1 0.5866 4.1956 -3.3751 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396297537.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:11 Heat of formation + Delta-G solvation = -29.234321 kcal Electronic energy + Delta-G solvation = -17286.737879 eV Core-core repulsion = 14595.735149 eV Total energy + Delta-G solvation = -2691.002730 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.48828 -38.60603 -36.62997 -35.29106 -32.93229 -31.85339 -28.87387 -27.90963 -27.02378 -24.63623 -23.52503 -22.04205 -20.65293 -19.45750 -18.42054 -17.12387 -16.93354 -16.52826 -16.22730 -15.95821 -15.24941 -14.86481 -14.48718 -14.42462 -14.05893 -13.85711 -13.57003 -13.15821 -13.07152 -12.85472 -12.66510 -12.37255 -12.16664 -12.13786 -12.11519 -11.77206 -11.44012 -11.22759 -10.90638 -10.57312 -9.93535 -8.76777 -8.63007 -7.92956 -6.28280 0.29699 0.83269 1.17285 1.34457 1.37037 1.48369 1.77151 1.80611 2.22171 2.72924 2.93834 3.45874 3.86937 4.26260 4.29961 4.42688 4.49821 4.50249 4.54616 4.60179 4.73660 4.76706 4.97997 5.00790 5.06110 5.13756 5.18566 5.36178 5.38713 5.53863 5.70699 5.74780 6.01313 6.21549 6.31230 6.63574 6.85685 7.18375 8.33899 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.015125 B = 0.010611 C = 0.006562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.741476 B = 2638.072451 C = 4265.956543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.046 4.046 3 C -0.189 4.189 4 C -0.139 4.139 5 C -0.103 4.103 6 C -0.163 4.163 7 C -0.170 4.170 8 C 0.009 3.991 9 O -0.337 6.337 10 C 0.025 3.975 11 C 0.089 3.911 12 C -0.492 4.492 13 H 0.068 0.932 14 C 0.039 3.961 15 N -0.802 5.802 16 Si 0.954 3.046 17 H -0.262 1.262 18 H -0.258 1.258 19 H -0.264 1.264 20 C -0.174 4.174 21 S 0.083 5.917 22 H 0.039 0.961 23 H 0.084 0.916 24 H 0.052 0.948 25 H 0.097 0.903 26 H 0.074 0.926 27 H 0.151 0.849 28 H 0.131 0.869 29 H 0.138 0.862 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.111 0.889 33 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.200 -4.613 4.991 6.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.085 4.085 3 C -0.305 4.305 4 C -0.170 4.170 5 C -0.110 4.110 6 C -0.185 4.185 7 C -0.190 4.190 8 C -0.039 4.039 9 O -0.252 6.252 10 C -0.070 4.070 11 C 0.083 3.917 12 C -0.522 4.522 13 H 0.086 0.914 14 C -0.177 4.177 15 N -0.429 5.429 16 Si 0.775 3.225 17 H -0.186 1.186 18 H -0.183 1.183 19 H -0.189 1.189 20 C -0.290 4.290 21 S 0.348 5.652 22 H 0.058 0.942 23 H 0.103 0.897 24 H 0.072 0.928 25 H 0.115 0.885 26 H 0.092 0.908 27 H 0.169 0.831 28 H 0.149 0.851 29 H 0.155 0.845 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.129 0.871 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.144 -4.997 3.189 5.929 hybrid contribution 0.199 0.874 0.878 1.254 sum 0.055 -4.123 4.066 5.791 Atomic orbital electron populations 1.21733 0.93916 1.02652 1.01548 1.20169 0.96530 0.88151 1.03697 1.24656 1.06816 1.01676 0.97364 1.20859 1.04352 0.92342 0.99462 1.19479 1.03728 0.95377 0.92442 1.20442 1.07422 0.92697 0.97893 1.20834 1.05994 0.98550 0.93667 1.19172 1.06810 0.85397 0.92499 1.85923 1.81485 1.21768 1.35985 1.23120 0.99960 0.92199 0.91682 1.16556 0.93631 0.88273 0.93254 1.19240 1.08984 1.31971 0.91996 0.91371 1.26385 0.93482 0.92981 1.04824 1.69897 1.03060 1.30700 1.39220 0.85542 0.79738 0.79513 0.77679 1.18568 1.18264 1.18882 1.22482 1.13360 0.97755 0.95436 1.83630 1.70438 1.02714 1.08406 0.94222 0.89694 0.92839 0.88451 0.90757 0.83123 0.85083 0.84474 0.93026 0.92560 0.87074 0.90016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 9.90 71.98 0.71 -2.89 16 2 C -0.05 -1.31 6.37 29.85 0.19 -1.12 16 3 C -0.19 -7.34 5.64 24.85 0.14 -7.20 16 4 C -0.14 -5.58 10.22 23.29 0.24 -5.34 16 5 C -0.10 -4.89 6.04 -20.34 -0.12 -5.02 16 6 C -0.16 -7.08 10.08 22.90 0.23 -6.85 16 7 C -0.17 -7.47 8.98 22.17 0.20 -7.27 16 8 C 0.01 0.47 6.71 23.04 0.15 0.63 16 9 O -0.34 -15.94 9.91 -89.72 -0.89 -16.82 16 10 C 0.03 0.82 9.81 113.37 1.11 1.93 16 11 C 0.09 5.04 5.38 -21.02 -0.11 4.93 16 12 C -0.49 -28.17 8.43 23.28 0.20 -27.97 16 13 H 0.07 3.96 7.91 -2.91 -0.02 3.94 16 14 C 0.04 2.07 4.25 85.22 0.36 2.43 16 15 N -0.80 -43.23 10.69 21.82 0.23 -42.99 16 16 Si 0.95 40.58 29.61 68.60 2.03 42.61 16 17 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 18 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 19 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 20 C -0.17 -9.26 5.74 23.49 0.13 -9.13 16 21 S 0.08 3.91 19.82 -56.49 -1.12 2.79 16 22 H 0.04 1.15 8.14 -2.39 -0.02 1.14 16 23 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.10 2.24 8.14 -2.38 -0.02 2.22 16 26 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.15 4.90 8.06 -2.91 -0.02 4.88 16 28 H 0.13 4.66 8.06 -2.91 -0.02 4.64 16 29 H 0.14 4.88 6.27 -2.91 -0.02 4.86 16 30 H 0.05 1.55 7.66 -2.39 -0.02 1.53 16 31 H 0.06 1.62 7.66 -2.39 -0.02 1.60 16 32 H 0.11 2.90 8.14 -2.38 -0.02 2.88 16 33 H 0.29 14.23 8.30 -92.71 -0.77 13.46 16 Total: -1.00 -66.12 291.64 4.80 -61.32 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 1.11 Total: 15.97 kcal Atomic # 6 Polarization: -66.30 SS G_CDS: 3.43 Total: -62.87 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: 0.23 Total: -42.99 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.89 Total: -16.82 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Atomic # 16 Polarization: 3.91 SS G_CDS: -1.12 Total: 2.79 kcal Total: -66.12 4.80 -61.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396297537.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.082 kcal (2) G-P(sol) polarization free energy of solvation -66.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds