Wall clock time and date at job start Mon Mar 30 2020 06:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47412 * 2 1 4 4 C 1.41088 * 119.97484 * 84.11404 * 3 2 1 5 5 C 1.41258 * 120.03480 * 0.02562 * 4 3 2 6 6 H 1.08003 * 119.99728 * 336.72866 * 5 4 3 7 7 C 1.39827 * 120.00299 * 156.72109 * 5 4 3 8 8 N 1.30902 * 120.00015 * 327.21769 * 7 5 4 9 9 Si 1.86811 * 119.99781 * 147.21386 * 7 5 4 10 10 H 1.48500 * 109.46955 * 94.95347 * 9 7 5 11 11 H 1.48496 * 109.47043 * 214.95455 * 9 7 5 12 12 H 1.48499 * 109.47111 * 334.95485 * 9 7 5 13 13 C 1.39938 * 119.93215 * 179.97438 * 4 3 2 14 14 C 1.40643 * 120.08244 * 0.07423 * 13 4 3 15 15 C 1.45566 * 129.14120 * 179.97438 * 14 13 4 16 16 C 1.31724 * 114.88075 * 179.97438 * 15 14 13 17 17 S 1.75261 * 111.48520 * 359.97438 * 16 15 14 18 18 C 1.40006 * 119.05697 * 359.95346 * 14 13 4 19 19 C 1.36106 * 119.96993 * 264.14867 * 3 2 1 20 20 O 1.35918 * 119.63667 * 359.97438 * 19 3 2 21 21 C 1.42895 * 116.99674 * 263.83537 * 20 19 3 22 22 H 1.08993 * 109.47291 * 64.73399 * 1 2 3 23 23 H 1.09004 * 109.46994 * 184.73949 * 1 2 3 24 24 H 1.08999 * 109.46835 * 304.73264 * 1 2 3 25 25 H 1.08996 * 109.47141 * 240.00012 * 2 1 3 26 26 H 1.09005 * 109.47610 * 120.00004 * 2 1 3 27 27 H 0.97003 * 119.99777 * 179.97438 * 8 7 5 28 28 H 1.08002 * 119.95759 * 180.02562 * 13 4 3 29 29 H 1.08000 * 122.55750 * 359.97438 * 15 14 13 30 30 H 1.08003 * 124.25821 * 180.02562 * 16 15 14 31 31 H 1.08999 * 109.47857 * 303.57977 * 21 20 19 32 32 H 1.09005 * 109.47281 * 63.58243 * 21 20 19 33 33 H 1.09003 * 109.47257 * 183.57776 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1492 2.1271 1.2157 5 6 1.7960 1.5031 2.4328 6 1 1.1080 0.6706 2.4330 7 6 2.3373 1.9630 3.6372 8 7 3.5494 2.4566 3.6639 9 14 1.3305 1.8733 5.2082 10 1 1.6675 0.6268 5.9416 11 1 1.6391 3.0487 6.0617 12 1 -0.1155 1.8731 4.8701 13 6 2.6163 3.4463 1.2147 14 6 2.9678 4.0688 0.0035 15 6 3.4691 5.4161 -0.2255 16 6 3.7105 5.7106 -1.4865 17 16 3.3485 4.3592 -2.5421 18 6 2.8437 3.3500 -1.1915 19 6 2.3724 2.0217 -1.1729 20 8 2.2563 1.3334 -2.3392 21 6 3.4342 0.6944 -2.8352 22 1 -0.3633 0.4386 -0.9293 23 1 -0.3633 -1.0242 0.0849 24 1 -0.3633 0.5855 0.8446 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.9247 2.7760 4.4994 28 1 2.7063 3.9872 2.1452 29 1 3.6306 6.1203 0.5771 30 1 4.0853 6.6646 -1.8270 31 1 4.2267 1.4335 -2.9524 32 1 3.7549 -0.0736 -2.1313 33 1 3.2197 0.2356 -3.8005 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396297610.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:26 Heat of formation + Delta-G solvation = -28.175925 kcal Electronic energy + Delta-G solvation = -17524.102505 eV Core-core repulsion = 14833.145670 eV Total energy + Delta-G solvation = -2690.956835 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.74020 -38.48889 -36.87111 -35.11163 -33.21582 -31.06234 -29.37138 -27.63152 -27.34945 -24.55596 -23.30046 -22.33739 -20.99333 -19.16746 -18.53438 -17.23708 -17.05100 -16.64808 -16.36293 -15.47722 -15.36105 -14.98240 -14.81324 -14.20561 -13.93740 -13.83588 -13.65752 -13.15770 -13.04234 -12.91366 -12.74035 -12.41407 -12.27294 -12.05925 -11.76042 -11.49283 -11.34610 -11.30107 -10.82670 -10.72638 -9.99334 -9.13456 -8.78390 -8.37507 -6.25525 0.18647 0.71779 1.00420 1.34346 1.39943 1.42000 1.54137 1.69158 2.17710 2.53469 2.99729 3.58795 4.01704 4.29716 4.34861 4.42247 4.52419 4.55222 4.70521 4.72990 4.76635 4.89048 4.94080 5.08204 5.16166 5.17376 5.23997 5.39450 5.42086 5.57468 5.69077 5.80644 5.94481 6.11595 6.48812 6.73437 6.86483 6.97445 8.18834 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.019573 B = 0.008385 C = 0.006301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.223773 B = 3338.416270 C = 4442.972231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.053 4.053 3 C -0.177 4.177 4 C 0.103 3.897 5 C -0.481 4.481 6 H 0.093 0.907 7 C 0.052 3.948 8 N -0.796 5.796 9 Si 0.965 3.035 10 H -0.258 1.258 11 H -0.268 1.268 12 H -0.257 1.257 13 C -0.199 4.199 14 C -0.055 4.055 15 C -0.139 4.139 16 C -0.183 4.183 17 S 0.036 5.964 18 C -0.284 4.284 19 C 0.139 3.861 20 O -0.349 6.349 21 C 0.033 3.967 22 H 0.044 0.956 23 H 0.072 0.928 24 H 0.044 0.956 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.293 0.707 28 H 0.094 0.906 29 H 0.147 0.853 30 H 0.194 0.806 31 H 0.037 0.963 32 H 0.043 0.957 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.365 0.045 -4.918 4.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.090 4.090 3 C -0.179 4.179 4 C 0.099 3.901 5 C -0.508 4.508 6 H 0.111 0.889 7 C -0.168 4.168 8 N -0.419 5.419 9 Si 0.786 3.214 10 H -0.183 1.183 11 H -0.192 1.192 12 H -0.181 1.181 13 C -0.221 4.221 14 C -0.062 4.062 15 C -0.170 4.170 16 C -0.316 4.316 17 S 0.295 5.705 18 C -0.398 4.398 19 C 0.092 3.908 20 O -0.267 6.267 21 C -0.062 4.062 22 H 0.063 0.937 23 H 0.091 0.909 24 H 0.063 0.937 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.104 0.896 28 H 0.112 0.888 29 H 0.165 0.835 30 H 0.211 0.789 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.193 -0.053 -6.450 6.453 hybrid contribution 0.096 0.415 2.447 2.484 sum -0.097 0.361 -4.003 4.021 Atomic orbital electron populations 1.21604 0.94689 1.01623 1.00926 1.20073 0.96322 0.91729 1.00919 1.19971 1.08853 0.97581 0.91540 1.17377 0.89299 0.90982 0.92422 1.19721 1.24450 1.16049 0.90587 0.88920 1.26730 0.94272 0.91576 1.04224 1.69983 1.13393 1.27464 1.31015 0.85450 0.80110 0.79252 0.76629 1.18287 1.19231 1.18054 1.20817 1.11519 0.95485 0.94281 1.19386 0.99955 0.93645 0.93169 1.21148 1.02896 0.95174 0.97796 1.25190 1.07090 1.03344 0.96005 1.83147 1.72074 1.05626 1.09631 1.22529 1.20727 0.99816 0.96722 1.17359 1.00286 0.87958 0.85154 1.85922 1.35153 1.68290 1.37292 1.23063 0.86932 0.96079 1.00083 0.93704 0.90944 0.93733 0.91974 0.92159 0.89620 0.88787 0.83532 0.78896 0.94470 0.93858 0.86276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.74 9.72 71.98 0.70 -4.04 16 2 C -0.05 -2.16 5.20 29.85 0.16 -2.01 16 3 C -0.18 -8.52 5.15 -19.66 -0.10 -8.62 16 4 C 0.10 5.40 5.54 -21.43 -0.12 5.28 16 5 C -0.48 -24.28 7.95 23.40 0.19 -24.09 16 6 H 0.09 4.46 6.13 -2.91 -0.02 4.44 16 7 C 0.05 2.50 4.73 85.22 0.40 2.90 16 8 N -0.80 -39.79 11.88 21.81 0.26 -39.53 16 9 Si 0.97 36.02 29.66 68.60 2.03 38.05 16 10 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 11 H -0.27 -9.65 7.11 99.48 0.71 -8.95 16 12 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 13 C -0.20 -10.50 8.86 23.27 0.21 -10.29 16 14 C -0.06 -2.70 6.03 -20.37 -0.12 -2.82 16 15 C -0.14 -5.54 10.39 23.45 0.24 -5.30 16 16 C -0.18 -6.27 11.01 67.11 0.74 -5.53 16 17 S 0.04 1.38 23.20 -56.49 -1.31 0.07 16 18 C -0.28 -13.33 6.46 23.36 0.15 -13.18 16 19 C 0.14 6.55 5.67 22.44 0.13 6.68 16 20 O -0.35 -14.39 9.32 -92.63 -0.86 -15.25 16 21 C 0.03 1.05 10.85 113.37 1.23 2.28 16 22 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 24 H 0.04 1.72 7.30 -2.39 -0.02 1.70 16 25 H 0.06 2.34 6.69 -2.39 -0.02 2.32 16 26 H 0.06 2.51 7.04 -2.38 -0.02 2.50 16 27 H 0.29 13.14 8.30 -92.71 -0.77 12.37 16 28 H 0.09 5.10 6.58 -2.91 -0.02 5.08 16 29 H 0.15 5.16 8.06 -2.91 -0.02 5.14 16 30 H 0.19 4.81 8.06 -2.91 -0.02 4.78 16 31 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.04 1.37 7.79 -2.38 -0.02 1.35 16 33 H 0.12 2.90 8.14 -2.39 -0.02 2.89 16 Total: -1.00 -59.19 291.45 5.04 -54.15 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 1.12 Total: 21.26 kcal Atomic # 6 Polarization: -62.54 SS G_CDS: 3.80 Total: -58.74 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.26 Total: -39.53 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.86 Total: -15.25 kcal Atomic # 14 Polarization: 36.02 SS G_CDS: 2.03 Total: 38.05 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -1.31 Total: 0.07 kcal Total: -59.19 5.04 -54.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396297610.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.973 kcal (2) G-P(sol) polarization free energy of solvation -59.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds