Wall clock time and date at job start Mon Mar 30 2020 06:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50704 * 109.46845 * 2 1 4 4 C 1.38335 * 119.25342 * 264.99636 * 3 2 1 5 5 C 1.37492 * 121.10856 * 180.02562 * 4 3 2 6 6 C 1.40399 * 120.11719 * 359.97438 * 5 4 3 7 7 C 1.40533 * 120.41316 * 180.02562 * 6 5 4 8 8 H 1.08006 * 120.00106 * 204.76663 * 7 6 5 9 9 C 1.39917 * 119.99964 * 24.76543 * 7 6 5 10 10 N 1.30892 * 120.00131 * 17.83396 * 9 7 6 11 11 Si 1.86808 * 120.00195 * 197.83307 * 9 7 6 12 12 H 1.48508 * 109.46685 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47155 * 119.99639 * 11 9 7 14 14 H 1.48491 * 109.47626 * 240.00255 * 11 9 7 15 15 C 1.47895 * 119.17449 * 359.97438 * 6 5 4 16 16 C 1.39736 * 129.16254 * 179.97438 * 15 6 5 17 17 C 1.33674 * 115.66570 * 179.97438 * 16 15 6 18 18 O 1.35553 * 124.70719 * 179.97438 * 17 16 15 19 19 C 1.42902 * 116.99531 * 179.97438 * 18 17 16 20 20 S 1.75504 * 110.58251 * 0.24426 * 17 16 15 21 21 C 1.39320 * 119.25279 * 84.98082 * 3 2 1 22 22 H 1.08998 * 109.46904 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46683 * 300.00092 * 1 2 3 24 24 H 1.09001 * 109.46895 * 59.99866 * 1 2 3 25 25 H 1.08995 * 109.47169 * 239.99867 * 2 1 3 26 26 H 1.09001 * 109.46895 * 120.00134 * 2 1 3 27 27 H 1.07995 * 119.44161 * 0.02562 * 4 3 2 28 28 H 1.07997 * 119.93650 * 179.97438 * 5 4 3 29 29 H 0.97008 * 119.99915 * 179.97438 * 10 9 7 30 30 H 1.07998 * 122.16820 * 0.02562 * 16 15 6 31 31 H 1.09002 * 109.47101 * 60.00081 * 19 18 17 32 32 H 1.09002 * 109.46810 * 180.02562 * 19 18 17 33 33 H 1.08998 * 109.47145 * 300.00177 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3569 2.0231 -1.2023 5 6 2.8190 3.3173 -1.2466 6 6 2.9689 4.0528 -0.0602 7 6 3.4402 5.3762 -0.0982 8 1 3.9273 5.8011 0.7671 9 6 3.2786 6.1433 -1.2572 10 7 2.4064 5.7830 -2.1642 11 14 4.3075 7.6819 -1.5100 12 1 5.2127 7.8685 -0.3476 13 1 5.1154 7.5391 -2.7479 14 1 3.4131 8.8605 -1.6358 15 6 2.6234 3.4180 1.2302 16 6 2.6915 3.9488 2.5210 17 6 2.3084 3.1291 3.5050 18 8 2.3014 3.4536 4.8211 19 6 1.8582 2.4481 5.7347 20 16 1.8231 1.5719 2.8571 21 6 2.1590 2.0982 1.2109 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 2.2454 1.4674 -2.1216 28 1 3.0672 3.7688 -2.1958 29 1 2.2940 6.3151 -2.9675 30 1 3.0308 4.9562 2.7113 31 1 2.5025 1.5728 5.6523 32 1 1.9014 2.8371 6.7520 33 1 0.8321 2.1677 5.4967 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396297714.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:37 Heat of formation + Delta-G solvation = -26.985629 kcal Electronic energy + Delta-G solvation = -17038.389792 eV Core-core repulsion = 14347.484572 eV Total energy + Delta-G solvation = -2690.905220 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.16676 -39.44749 -36.21187 -35.84942 -33.47716 -30.75627 -29.77056 -27.88237 -26.78261 -24.50427 -23.68498 -22.04174 -21.06909 -19.80002 -18.44753 -17.19487 -16.94957 -16.71788 -16.61492 -15.92206 -15.16905 -15.06420 -14.51994 -14.37206 -14.28045 -13.60099 -13.51033 -13.25318 -13.06037 -13.00640 -12.84063 -12.51285 -12.34352 -12.00188 -11.88815 -11.76718 -11.44767 -11.24766 -11.16431 -10.85067 -9.88900 -8.87195 -8.74373 -8.43042 -6.26895 0.16265 0.58611 0.88030 1.05153 1.37061 1.46596 1.52885 1.78945 2.15753 2.40489 2.59729 3.58796 4.20969 4.26031 4.29571 4.30467 4.54363 4.56360 4.63876 4.66558 4.76607 4.93577 5.02536 5.03132 5.11699 5.17979 5.28771 5.39422 5.45269 5.56042 5.85629 5.96201 6.12056 6.16327 6.25189 6.57650 6.76539 6.90594 8.16927 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.017912 B = 0.007717 C = 0.005573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.810736 B = 3627.676860 C = 5023.363910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.060 4.060 3 C -0.190 4.190 4 C -0.068 4.068 5 C -0.210 4.210 6 C 0.116 3.884 7 C -0.465 4.465 8 H 0.078 0.922 9 C 0.037 3.963 10 N -0.801 5.801 11 Si 0.985 3.015 12 H -0.259 1.259 13 H -0.258 1.258 14 H -0.262 1.262 15 C -0.185 4.185 16 C -0.143 4.143 17 C -0.032 4.032 18 O -0.304 6.304 19 C 0.015 3.985 20 S 0.055 5.945 21 C -0.103 4.103 22 H 0.075 0.925 23 H 0.039 0.961 24 H 0.046 0.954 25 H 0.075 0.925 26 H 0.056 0.944 27 H 0.119 0.881 28 H 0.110 0.890 29 H 0.296 0.704 30 H 0.122 0.878 31 H 0.061 0.939 32 H 0.134 0.866 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.312 -6.012 5.782 8.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.098 4.098 3 C -0.197 4.197 4 C -0.089 4.089 5 C -0.232 4.232 6 C 0.111 3.889 7 C -0.492 4.492 8 H 0.096 0.904 9 C -0.181 4.181 10 N -0.425 5.425 11 Si 0.805 3.195 12 H -0.183 1.183 13 H -0.182 1.182 14 H -0.187 1.187 15 C -0.191 4.191 16 C -0.173 4.173 17 C -0.190 4.190 18 O -0.219 6.219 19 C -0.080 4.080 20 S 0.313 5.687 21 C -0.217 4.217 22 H 0.094 0.906 23 H 0.058 0.942 24 H 0.066 0.934 25 H 0.093 0.907 26 H 0.075 0.925 27 H 0.137 0.863 28 H 0.128 0.872 29 H 0.107 0.893 30 H 0.140 0.860 31 H 0.079 0.921 32 H 0.152 0.848 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.892 -7.029 6.393 9.688 hybrid contribution 0.748 2.028 -0.817 2.311 sum -1.144 -5.001 5.576 7.577 Atomic orbital electron populations 1.21712 0.95089 1.01749 1.01120 1.20264 0.96022 0.91701 1.01770 1.18728 1.13289 0.97686 0.89990 1.20635 0.97482 0.94584 0.96176 1.20999 1.09874 0.94514 0.97763 1.18757 0.88077 0.92748 0.89291 1.19779 1.32337 0.97191 0.99902 0.90390 1.26857 0.94470 1.02856 0.93935 1.69894 1.25619 1.38558 1.08388 0.85102 0.78614 0.76098 0.79675 1.18274 1.18192 1.18701 1.18982 1.11700 0.95052 0.93393 1.19158 1.07125 1.00582 0.90421 1.22697 1.11450 0.97952 0.86893 1.85815 1.83519 1.41084 1.11487 1.23446 0.99740 0.91370 0.93450 1.83034 1.73916 1.12970 0.98797 1.22127 1.06432 0.97130 0.96024 0.90634 0.94219 0.93448 0.90662 0.92495 0.86271 0.87167 0.89335 0.86050 0.92086 0.84809 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.21 9.90 71.98 0.71 -3.50 16 2 C -0.06 -2.02 5.84 29.85 0.17 -1.85 16 3 C -0.19 -8.25 5.16 -19.58 -0.10 -8.36 16 4 C -0.07 -3.12 9.55 22.12 0.21 -2.90 16 5 C -0.21 -10.93 8.66 22.62 0.20 -10.74 16 6 C 0.12 6.36 5.76 -19.63 -0.11 6.24 16 7 C -0.46 -24.88 8.82 23.24 0.20 -24.68 16 8 H 0.08 4.10 7.51 -2.91 -0.02 4.08 16 9 C 0.04 1.81 5.13 85.24 0.44 2.25 16 10 N -0.80 -40.22 10.97 21.83 0.24 -39.98 16 11 Si 0.99 36.90 29.60 68.60 2.03 38.93 16 12 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 13 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 14 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 15 C -0.19 -9.61 6.02 -19.95 -0.12 -9.73 16 16 C -0.14 -6.93 9.79 21.60 0.21 -6.72 16 17 C -0.03 -1.35 7.18 66.78 0.48 -0.87 16 18 O -0.30 -11.00 10.56 -88.59 -0.94 -11.94 16 19 C 0.02 0.37 10.24 113.37 1.16 1.53 16 20 S 0.06 2.10 21.33 -56.49 -1.20 0.90 16 21 C -0.10 -4.77 6.28 22.94 0.14 -4.63 16 22 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 23 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.07 2.25 8.01 -2.39 -0.02 2.24 16 26 H 0.06 1.83 7.72 -2.39 -0.02 1.82 16 27 H 0.12 4.70 8.03 -2.91 -0.02 4.67 16 28 H 0.11 5.87 6.16 -2.91 -0.02 5.85 16 29 H 0.30 13.15 8.30 -92.70 -0.77 12.39 16 30 H 0.12 5.87 7.71 -2.91 -0.02 5.84 16 31 H 0.06 1.39 8.02 -2.39 -0.02 1.37 16 32 H 0.13 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.06 1.37 8.03 -2.39 -0.02 1.35 16 Total: -1.00 -60.61 294.17 4.84 -55.77 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 1.11 Total: 20.27 kcal Atomic # 6 Polarization: -67.54 SS G_CDS: 3.60 Total: -63.94 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.24 Total: -39.98 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: -0.94 Total: -11.94 kcal Atomic # 14 Polarization: 36.90 SS G_CDS: 2.03 Total: 38.93 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -1.20 Total: 0.90 kcal Total: -60.61 4.84 -55.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396297714.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.783 kcal (2) G-P(sol) polarization free energy of solvation -60.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds