Wall clock time and date at job start Mon Mar 30 2020 06:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50695 * 109.47569 * 2 1 4 4 C 1.35207 * 119.56178 * 265.02112 * 3 2 1 5 5 C 1.41223 * 120.38664 * 179.97438 * 4 3 2 6 6 C 1.40967 * 120.20321 * 180.02562 * 5 4 3 7 7 H 1.08003 * 119.99844 * 334.99509 * 6 5 4 8 8 C 1.39814 * 120.00294 * 154.98857 * 6 5 4 9 9 N 1.30933 * 119.99544 * 342.09311 * 8 6 5 10 10 Si 1.86796 * 120.00057 * 162.08887 * 8 6 5 11 11 H 1.48499 * 109.47025 * 94.65238 * 10 8 6 12 12 H 1.48500 * 109.47234 * 214.64873 * 10 8 6 13 13 H 1.48499 * 109.47233 * 334.65180 * 10 8 6 14 14 C 1.40419 * 119.59741 * 0.02562 * 5 4 3 15 15 C 1.38812 * 119.97616 * 359.97438 * 14 5 4 16 16 S 1.76042 * 130.40328 * 180.02562 * 15 14 5 17 17 C 1.75463 * 91.60859 * 179.79767 * 16 15 14 18 18 C 1.32997 * 110.82680 * 0.33909 * 17 16 15 19 19 O 1.36119 * 122.12861 * 179.86502 * 18 17 16 20 20 C 1.42903 * 116.99805 * 359.71009 * 19 18 17 21 21 C 1.40409 * 120.14751 * 0.02562 * 15 14 5 22 22 H 1.09005 * 109.47354 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47391 * 300.00610 * 1 2 3 24 24 H 1.09000 * 109.47312 * 60.00383 * 1 2 3 25 25 H 1.09000 * 109.47391 * 239.99390 * 2 1 3 26 26 H 1.09013 * 109.46978 * 119.99621 * 2 1 3 27 27 H 1.08006 * 119.80511 * 359.95375 * 4 3 2 28 28 H 0.97002 * 119.99015 * 179.97438 * 9 8 6 29 29 H 1.08005 * 120.01484 * 179.97438 * 14 5 4 30 30 H 1.08001 * 124.58767 * 180.20511 * 17 16 15 31 31 H 1.09000 * 109.46870 * 180.02562 * 20 19 18 32 32 H 1.08997 * 109.46952 * 300.00303 * 20 19 18 33 33 H 1.08994 * 109.47288 * 60.00376 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3510 2.0156 -1.1716 5 6 2.8229 3.3465 -1.1919 6 6 3.1535 3.9631 -2.4157 7 1 3.4395 3.3596 -3.2646 8 6 3.1111 5.3558 -2.5308 9 7 2.4464 6.0651 -1.6536 10 14 4.0027 6.2046 -3.9358 11 1 3.0566 6.4302 -5.0579 12 1 4.5355 7.5092 -3.4676 13 1 5.1247 5.3490 -4.3987 14 6 2.9609 4.0519 0.0144 15 6 2.6336 3.4403 1.2168 16 16 2.6983 4.0559 2.8648 17 6 2.0962 2.5385 3.5078 18 6 1.8831 1.6621 2.5305 19 8 1.4167 0.4065 2.7730 20 6 1.1674 0.0592 4.1366 21 6 2.1649 2.1169 1.2301 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.2443 1.4696 -2.0974 28 1 2.4174 7.0315 -1.7332 29 1 3.3217 5.0699 0.0067 30 1 1.9241 2.3420 4.5558 31 1 0.8006 -0.9659 4.1892 32 1 2.0918 0.1437 4.7079 33 1 0.4200 0.7347 4.5528 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396298818.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:28 Heat of formation + Delta-G solvation = -17.209254 kcal Electronic energy + Delta-G solvation = -17306.425167 eV Core-core repulsion = 14615.943882 eV Total energy + Delta-G solvation = -2690.481284 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.36673 -37.52852 -34.53693 -33.48470 -32.00776 -28.75105 -28.23113 -27.31261 -25.17471 -22.91643 -21.91580 -20.34134 -19.54970 -17.23528 -16.61578 -16.17397 -15.41088 -15.25573 -14.78377 -14.14132 -13.70981 -13.43986 -13.07200 -12.75671 -12.58145 -12.04385 -11.74652 -11.67198 -11.49930 -11.31154 -11.07832 -11.02215 -10.79327 -10.61862 -10.32594 -10.25477 -9.90455 -9.64625 -9.35092 -9.07481 -8.05095 -7.40023 -7.00229 -6.41802 -4.52189 1.91550 2.71863 2.79180 2.88622 2.97420 3.02726 3.12452 3.52503 3.76761 3.97987 4.42272 5.36570 5.38831 5.44665 5.60539 5.67113 5.75401 5.82946 6.09861 6.26432 6.32172 6.42623 6.55745 6.62223 6.76769 6.82894 6.85848 6.91725 7.07556 7.25338 7.60021 7.66099 7.80151 7.99382 8.07363 8.34499 8.61249 8.69727 9.91894 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.025891 B = 0.006726 C = 0.005535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.191123 B = 4161.785194 C = 5057.105212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.081 4.081 3 C -0.002 4.002 4 C -0.201 4.201 5 C 0.132 3.868 6 C -0.434 4.434 7 H 0.087 0.913 8 C 0.072 3.928 9 N -0.770 5.770 10 Si 0.913 3.087 11 H -0.268 1.268 12 H -0.273 1.273 13 H -0.257 1.257 14 C -0.165 4.165 15 C -0.053 4.053 16 S 0.013 5.987 17 C -0.383 4.383 18 C 0.177 3.823 19 O -0.306 6.306 20 C 0.030 3.970 21 C -0.216 4.216 22 H 0.044 0.956 23 H 0.055 0.945 24 H 0.049 0.951 25 H 0.057 0.943 26 H 0.074 0.926 27 H 0.102 0.898 28 H 0.287 0.713 29 H 0.124 0.876 30 H 0.144 0.856 31 H 0.089 0.911 32 H 0.047 0.953 33 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.122 -5.585 4.235 7.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.118 4.118 3 C -0.004 4.004 4 C -0.220 4.220 5 C 0.126 3.874 6 C -0.463 4.463 7 H 0.105 0.895 8 C -0.149 4.149 9 N -0.393 5.393 10 Si 0.736 3.264 11 H -0.193 1.193 12 H -0.197 1.197 13 H -0.181 1.181 14 C -0.192 4.192 15 C -0.168 4.168 16 S 0.270 5.730 17 C -0.516 4.516 18 C 0.122 3.878 19 O -0.220 6.220 20 C -0.066 4.066 21 C -0.221 4.221 22 H 0.063 0.937 23 H 0.074 0.926 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.092 0.908 27 H 0.121 0.879 28 H 0.098 0.902 29 H 0.142 0.858 30 H 0.162 0.838 31 H 0.108 0.892 32 H 0.066 0.934 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.869 -4.221 4.920 6.541 hybrid contribution -0.160 -0.630 -0.713 0.965 sum -1.030 -4.851 4.207 6.503 Atomic orbital electron populations 1.21610 0.95603 1.00118 1.01829 1.20529 0.95749 0.94039 1.01520 1.19029 0.96106 0.93916 0.91394 1.20542 1.08503 0.97245 0.95720 1.17492 0.86750 0.90561 0.92614 1.19665 1.37592 0.91531 0.97500 0.89536 1.26054 0.93277 0.97973 0.97630 1.69883 1.28053 1.08582 1.32782 0.86204 0.80515 0.79042 0.80591 1.19261 1.19731 1.18082 1.20534 1.09235 1.01040 0.88385 1.22059 1.03052 0.95527 0.96113 1.83467 1.74454 1.15573 0.99524 1.24105 1.26481 0.99854 1.01185 1.17674 0.94139 0.83247 0.92694 1.86125 1.80494 1.28697 1.26661 1.22887 1.00275 1.00721 0.82716 1.16802 1.19610 0.95207 0.90466 0.93725 0.92637 0.93215 0.92469 0.90784 0.87949 0.90218 0.85817 0.83819 0.89224 0.93405 0.93384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 9.76 37.15 0.36 -1.91 16 2 C -0.08 -1.51 5.41 -27.89 -0.15 -1.66 16 3 C 0.00 -0.05 5.15 -104.28 -0.54 -0.59 16 4 C -0.20 -4.73 9.27 -39.53 -0.37 -5.10 16 5 C 0.13 3.39 5.56 -106.91 -0.59 2.79 16 6 C -0.43 -10.76 9.02 -37.96 -0.34 -11.11 16 7 H 0.09 2.01 7.91 -52.48 -0.41 1.60 16 8 C 0.07 1.69 5.12 -17.35 -0.09 1.60 16 9 N -0.77 -18.98 10.99 55.54 0.61 -18.37 16 10 Si 0.91 17.43 29.59 -169.99 -5.03 12.40 16 11 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 12 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 13 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 14 C -0.17 -4.30 8.71 -38.55 -0.34 -4.63 16 15 C -0.05 -1.30 6.46 -38.55 -0.25 -1.55 16 16 S 0.01 0.27 23.29 -107.50 -2.50 -2.23 16 17 C -0.38 -7.73 9.97 28.91 0.29 -7.44 16 18 C 0.18 3.76 6.61 -40.50 -0.27 3.50 16 19 O -0.31 -5.58 7.35 -20.12 -0.15 -5.73 16 20 C 0.03 0.39 9.91 101.05 1.00 1.40 16 21 C -0.22 -5.11 5.85 -106.76 -0.62 -5.73 16 22 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.05 1.01 7.65 -51.93 -0.40 0.61 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.06 0.97 8.00 -51.93 -0.42 0.55 16 26 H 0.07 1.37 6.22 -51.92 -0.32 1.04 16 27 H 0.10 2.21 8.02 -52.48 -0.42 1.79 16 28 H 0.29 6.38 8.30 -40.82 -0.34 6.04 16 29 H 0.12 3.31 6.18 -52.48 -0.32 2.99 16 30 H 0.14 2.49 6.88 -52.49 -0.36 2.13 16 31 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.05 0.60 7.83 -51.93 -0.41 0.19 16 33 H 0.05 0.61 7.81 -51.93 -0.41 0.20 16 LS Contribution 288.56 15.07 4.35 4.35 Total: -1.00 -27.05 288.56 -8.50 -35.55 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -3.87 Total: 4.47 kcal Atomic # 6 Polarization: -28.53 SS G_CDS: -1.91 Total: -30.43 kcal Atomic # 7 Polarization: -18.98 SS G_CDS: 0.61 Total: -18.37 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: -0.15 Total: -5.73 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.03 Total: 12.40 kcal Atomic # 16 Polarization: 0.27 SS G_CDS: -2.50 Total: -2.23 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.05 -8.50 -35.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396298818.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.339 kcal (2) G-P(sol) polarization free energy of solvation -27.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds