Wall clock time and date at job start Mon Mar 30 2020 06:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50695 * 109.47569 * 2 1 4 4 C 1.35207 * 119.56178 * 265.02112 * 3 2 1 5 5 C 1.41223 * 120.38664 * 179.97438 * 4 3 2 6 6 C 1.40967 * 120.20321 * 180.02562 * 5 4 3 7 7 H 1.08003 * 119.99844 * 334.99509 * 6 5 4 8 8 C 1.39814 * 120.00294 * 154.98857 * 6 5 4 9 9 N 1.30933 * 119.99544 * 342.09311 * 8 6 5 10 10 Si 1.86796 * 120.00057 * 162.08887 * 8 6 5 11 11 H 1.48499 * 109.47025 * 94.65238 * 10 8 6 12 12 H 1.48500 * 109.47234 * 214.64873 * 10 8 6 13 13 H 1.48499 * 109.47233 * 334.65180 * 10 8 6 14 14 C 1.40419 * 119.59741 * 0.02562 * 5 4 3 15 15 C 1.38812 * 119.97616 * 359.97438 * 14 5 4 16 16 S 1.76042 * 130.40328 * 180.02562 * 15 14 5 17 17 C 1.75463 * 91.60859 * 179.79767 * 16 15 14 18 18 C 1.32997 * 110.82680 * 0.33909 * 17 16 15 19 19 O 1.36119 * 122.12861 * 179.86502 * 18 17 16 20 20 C 1.42903 * 116.99805 * 359.71009 * 19 18 17 21 21 C 1.40409 * 120.14751 * 0.02562 * 15 14 5 22 22 H 1.09005 * 109.47354 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47391 * 300.00610 * 1 2 3 24 24 H 1.09000 * 109.47312 * 60.00383 * 1 2 3 25 25 H 1.09000 * 109.47391 * 239.99390 * 2 1 3 26 26 H 1.09013 * 109.46978 * 119.99621 * 2 1 3 27 27 H 1.08006 * 119.80511 * 359.95375 * 4 3 2 28 28 H 0.97002 * 119.99015 * 179.97438 * 9 8 6 29 29 H 1.08005 * 120.01484 * 179.97438 * 14 5 4 30 30 H 1.08001 * 124.58767 * 180.20511 * 17 16 15 31 31 H 1.09000 * 109.46870 * 180.02562 * 20 19 18 32 32 H 1.08997 * 109.46952 * 300.00303 * 20 19 18 33 33 H 1.08994 * 109.47288 * 60.00376 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3510 2.0156 -1.1716 5 6 2.8229 3.3465 -1.1919 6 6 3.1535 3.9631 -2.4157 7 1 3.4395 3.3596 -3.2646 8 6 3.1111 5.3558 -2.5308 9 7 2.4464 6.0651 -1.6536 10 14 4.0027 6.2046 -3.9358 11 1 3.0566 6.4302 -5.0579 12 1 4.5355 7.5092 -3.4676 13 1 5.1247 5.3490 -4.3987 14 6 2.9609 4.0519 0.0144 15 6 2.6336 3.4403 1.2168 16 16 2.6983 4.0559 2.8648 17 6 2.0962 2.5385 3.5078 18 6 1.8831 1.6621 2.5305 19 8 1.4167 0.4065 2.7730 20 6 1.1674 0.0592 4.1366 21 6 2.1649 2.1169 1.2301 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.2443 1.4696 -2.0974 28 1 2.4174 7.0315 -1.7332 29 1 3.3217 5.0699 0.0067 30 1 1.9241 2.3420 4.5558 31 1 0.8006 -0.9659 4.1892 32 1 2.0918 0.1437 4.7079 33 1 0.4200 0.7347 4.5528 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396298818.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:28 Heat of formation + Delta-G solvation = -30.271429 kcal Electronic energy + Delta-G solvation = -17306.991585 eV Core-core repulsion = 14615.943882 eV Total energy + Delta-G solvation = -2691.047703 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.95179 -39.13980 -36.26542 -35.07629 -33.71035 -30.51738 -29.87836 -28.53115 -26.89184 -24.48523 -23.62925 -22.03546 -21.16422 -19.01035 -18.30845 -17.69713 -17.09714 -16.56812 -16.41271 -15.80636 -15.28517 -14.92908 -14.62951 -14.27498 -14.20174 -13.71770 -13.29971 -13.21749 -13.00322 -12.82958 -12.63190 -12.55034 -12.27279 -12.11214 -11.99547 -11.78867 -11.53325 -11.28742 -11.09148 -10.81604 -9.78472 -9.21905 -8.76673 -8.14238 -6.39915 0.18305 0.94087 0.98461 1.33793 1.40155 1.41413 1.54910 1.82416 2.16708 2.62106 2.65198 3.54555 4.03378 4.20545 4.33011 4.39760 4.45466 4.64486 4.67664 4.75332 4.82171 4.88062 4.96648 5.03856 5.08526 5.16560 5.18795 5.31296 5.45648 5.48027 5.80216 5.86117 6.02444 6.15533 6.49684 6.55484 6.76643 6.85847 8.18733 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.025891 B = 0.006726 C = 0.005535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.191123 B = 4161.785194 C = 5057.105212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.077 4.077 3 C -0.006 4.006 4 C -0.216 4.216 5 C 0.105 3.895 6 C -0.466 4.466 7 H 0.093 0.907 8 C 0.033 3.967 9 N -0.807 5.807 10 Si 0.988 3.012 11 H -0.258 1.258 12 H -0.268 1.268 13 H -0.253 1.253 14 C -0.193 4.193 15 C -0.080 4.080 16 S 0.021 5.979 17 C -0.373 4.373 18 C 0.171 3.829 19 O -0.312 6.312 20 C 0.019 3.981 21 C -0.232 4.232 22 H 0.078 0.922 23 H 0.040 0.960 24 H 0.041 0.959 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.116 0.884 28 H 0.293 0.707 29 H 0.104 0.896 30 H 0.178 0.822 31 H 0.123 0.877 32 H 0.057 0.943 33 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.501 -7.094 4.905 8.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.114 4.114 3 C -0.008 4.008 4 C -0.236 4.236 5 C 0.099 3.901 6 C -0.494 4.494 7 H 0.111 0.889 8 C -0.185 4.185 9 N -0.431 5.431 10 Si 0.808 3.192 11 H -0.183 1.183 12 H -0.192 1.192 13 H -0.177 1.177 14 C -0.220 4.220 15 C -0.195 4.195 16 S 0.278 5.722 17 C -0.506 4.506 18 C 0.115 3.885 19 O -0.226 6.226 20 C -0.076 4.076 21 C -0.238 4.238 22 H 0.097 0.903 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.134 0.866 28 H 0.104 0.896 29 H 0.122 0.878 30 H 0.195 0.805 31 H 0.141 0.859 32 H 0.076 0.924 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.259 -5.750 5.606 8.129 hybrid contribution -0.109 -0.273 -0.717 0.775 sum -1.368 -6.024 4.889 7.878 Atomic orbital electron populations 1.21547 0.94185 1.01969 1.00729 1.20567 0.96817 0.91440 1.02554 1.19494 0.94829 0.95826 0.90661 1.20742 1.09072 0.96877 0.96910 1.17866 0.87377 0.91784 0.93034 1.19956 1.39082 0.92721 0.97639 0.88912 1.26950 0.93268 0.98113 1.00150 1.69947 1.29242 1.09183 1.34729 0.85092 0.79206 0.77741 0.77189 1.18280 1.19210 1.17665 1.20426 1.11440 1.00599 0.89523 1.22393 1.03241 0.96634 0.97239 1.83357 1.74409 1.16681 0.97730 1.24472 1.24970 0.98466 1.02650 1.17527 0.94433 0.84802 0.91701 1.86105 1.79944 1.26725 1.29833 1.23280 1.01176 1.02780 0.80321 1.17262 1.19180 0.95034 0.92293 0.90348 0.94105 0.93935 0.90785 0.90311 0.86640 0.89571 0.87787 0.80490 0.85889 0.92403 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.03 9.76 71.98 0.70 -3.33 16 2 C -0.08 -2.71 5.41 29.84 0.16 -2.55 16 3 C -0.01 -0.27 5.15 -19.64 -0.10 -0.37 16 4 C -0.22 -10.45 9.27 22.30 0.21 -10.24 16 5 C 0.11 5.64 5.56 -21.35 -0.12 5.52 16 6 C -0.47 -23.95 9.02 23.32 0.21 -23.74 16 7 H 0.09 4.45 7.91 -2.91 -0.02 4.43 16 8 C 0.03 1.59 5.12 85.21 0.44 2.03 16 9 N -0.81 -41.42 10.99 21.81 0.24 -41.18 16 10 Si 0.99 36.18 29.59 68.60 2.03 38.21 16 11 H -0.26 -9.01 7.11 99.48 0.71 -8.31 16 12 H -0.27 -9.48 7.11 99.48 0.71 -8.77 16 13 H -0.25 -9.01 7.11 99.48 0.71 -8.30 16 14 C -0.19 -10.57 8.71 22.94 0.20 -10.37 16 15 C -0.08 -4.08 6.46 22.94 0.15 -3.93 16 16 S 0.02 0.91 23.29 -56.49 -1.32 -0.41 16 17 C -0.37 -14.27 9.97 66.65 0.66 -13.60 16 18 C 0.17 6.97 6.61 21.68 0.14 7.11 16 19 O -0.31 -10.52 7.35 -94.90 -0.70 -11.22 16 20 C 0.02 0.43 9.91 113.37 1.12 1.55 16 21 C -0.23 -11.01 5.85 -21.25 -0.12 -11.13 16 22 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 23 H 0.04 1.40 7.65 -2.39 -0.02 1.38 16 24 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.07 2.35 8.00 -2.39 -0.02 2.33 16 26 H 0.08 2.72 6.22 -2.38 -0.01 2.71 16 27 H 0.12 5.07 8.02 -2.91 -0.02 5.05 16 28 H 0.29 13.53 8.30 -92.71 -0.77 12.77 16 29 H 0.10 5.95 6.18 -2.91 -0.02 5.93 16 30 H 0.18 5.47 6.88 -2.91 -0.02 5.45 16 31 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.06 1.21 7.83 -2.39 -0.02 1.19 16 33 H 0.06 1.20 7.81 -2.39 -0.02 1.18 16 Total: -1.00 -60.37 288.56 5.03 -55.34 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 1.12 Total: 22.30 kcal Atomic # 6 Polarization: -66.70 SS G_CDS: 3.65 Total: -63.05 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.24 Total: -41.18 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: -0.70 Total: -11.22 kcal Atomic # 14 Polarization: 36.18 SS G_CDS: 2.03 Total: 38.21 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -1.32 Total: -0.41 kcal Total: -60.37 5.03 -55.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396298818.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.070 kcal (2) G-P(sol) polarization free energy of solvation -60.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds