Wall clock time and date at job start Mon Mar 30 2020 06:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50696 * 109.47319 * 2 1 4 4 C 1.37828 * 119.62104 * 269.97713 * 3 2 1 5 5 C 1.41277 * 120.90640 * 179.97438 * 4 3 2 6 6 C 1.45695 * 129.16568 * 179.97438 * 5 4 3 7 7 O 1.36157 * 122.60948 * 0.06719 * 6 5 4 8 8 C 1.42894 * 116.99994 * 179.97438 * 7 6 5 9 9 C 1.32171 * 114.77971 * 180.02562 * 6 5 4 10 10 S 1.75289 * 111.33932 * 359.97438 * 9 6 5 11 11 C 1.39463 * 119.01367 * 0.04835 * 5 4 3 12 12 C 1.42170 * 119.66750 * 359.97438 * 11 5 4 13 13 C 1.40905 * 120.11421 * 179.97438 * 12 11 5 14 14 H 1.08001 * 120.00394 * 334.44790 * 13 12 11 15 15 C 1.39884 * 120.00152 * 154.45453 * 13 12 11 16 16 N 1.30895 * 119.99738 * 342.57626 * 15 13 12 17 17 Si 1.86797 * 119.99984 * 162.57853 * 15 13 12 18 18 H 1.48498 * 109.47406 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47039 * 120.00177 * 17 15 13 20 20 H 1.48503 * 109.46861 * 239.99890 * 17 15 13 21 21 C 1.37874 * 119.61580 * 90.00083 * 3 2 1 22 22 H 1.08990 * 109.46784 * 300.00127 * 1 2 3 23 23 H 1.09004 * 109.46669 * 59.99924 * 1 2 3 24 24 H 1.08995 * 109.47113 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46877 * 240.00025 * 2 1 3 26 26 H 1.08998 * 109.47129 * 120.00598 * 2 1 3 27 27 H 1.07994 * 119.54706 * 359.97438 * 4 3 2 28 28 H 1.08996 * 109.47405 * 300.00615 * 8 7 6 29 29 H 1.09003 * 109.47003 * 59.99996 * 8 7 6 30 30 H 1.09005 * 109.47380 * 180.02562 * 8 7 6 31 31 H 1.07995 * 124.32931 * 180.02562 * 9 6 5 32 32 H 0.96997 * 119.99847 * 180.02562 * 16 15 13 33 33 H 1.07996 * 120.06108 * 359.97438 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2600 2.0629 -1.1982 5 6 2.7303 3.3947 -1.2299 6 6 3.0293 4.2378 -2.3798 7 8 2.8779 3.8090 -3.6632 8 6 3.2061 4.7361 -4.6999 9 6 3.4582 5.4516 -2.0802 10 16 3.5400 5.6891 -0.3454 11 6 2.9649 4.0580 -0.0257 12 6 2.7276 3.3872 1.2051 13 6 2.9620 4.0482 2.4272 14 1 3.6762 4.8569 2.4755 15 6 2.2696 3.6571 3.5780 16 7 1.1825 2.9354 3.4741 17 14 2.8963 4.1647 5.2629 18 1 4.1342 4.9704 5.1085 19 1 1.8606 4.9748 5.9528 20 1 3.1928 2.9518 6.0667 21 6 2.2596 2.0631 1.1986 22 1 -0.3632 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 2.0762 1.5408 -2.1255 28 1 2.5748 5.6201 -4.6100 29 1 4.2528 5.0265 -4.6097 30 1 3.0406 4.2690 -5.6708 31 1 3.7235 6.2013 -2.8108 32 1 0.7022 2.6645 4.2721 33 1 2.0774 1.5492 2.1308 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396299504.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:03 Heat of formation + Delta-G solvation = -17.587366 kcal Electronic energy + Delta-G solvation = -17092.584773 eV Core-core repulsion = 14402.087092 eV Total energy + Delta-G solvation = -2690.497681 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.13154 -37.61175 -34.17617 -34.06206 -31.41014 -29.28953 -27.64988 -27.21080 -25.37521 -23.02769 -21.77694 -20.66664 -18.96254 -17.65224 -16.36027 -16.18682 -15.31368 -15.13808 -15.03535 -14.16533 -13.75803 -13.42268 -12.89542 -12.82158 -12.59890 -12.22813 -11.77996 -11.62091 -11.41228 -11.23152 -11.16455 -10.99478 -10.66374 -10.57834 -10.36579 -10.10628 -9.94748 -9.53650 -9.31117 -9.17974 -7.99125 -7.28258 -6.90801 -6.48608 -4.42630 1.93402 2.60802 2.67022 3.00459 3.03573 3.09424 3.23739 3.47330 3.81278 3.87950 4.50061 5.28051 5.34978 5.37500 5.41947 5.62522 5.73986 5.77714 6.12195 6.13061 6.35746 6.41140 6.46761 6.51943 6.61258 6.83187 6.90725 6.98184 7.07831 7.31542 7.45248 7.76048 7.84567 8.01554 8.09350 8.44935 8.69231 8.75609 10.05415 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.017832 B = 0.008050 C = 0.005714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.845047 B = 3477.288620 C = 4898.900371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.074 4.074 3 C -0.059 4.059 4 C -0.190 4.190 5 C -0.049 4.049 6 C 0.123 3.877 7 O -0.309 6.309 8 C 0.032 3.968 9 C -0.329 4.329 10 S 0.056 5.944 11 C -0.193 4.193 12 C 0.143 3.857 13 C -0.454 4.454 14 H 0.081 0.919 15 C 0.078 3.922 16 N -0.783 5.783 17 Si 0.909 3.091 18 H -0.258 1.258 19 H -0.273 1.273 20 H -0.270 1.270 21 C -0.154 4.154 22 H 0.060 0.940 23 H 0.050 0.950 24 H 0.043 0.957 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.096 0.904 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.092 0.908 31 H 0.150 0.850 32 H 0.283 0.717 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.287 0.032 -6.021 6.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 C -0.061 4.061 4 C -0.212 4.212 5 C -0.056 4.056 6 C 0.066 3.934 7 O -0.223 6.223 8 C -0.064 4.064 9 C -0.463 4.463 10 S 0.316 5.684 11 C -0.308 4.308 12 C 0.137 3.863 13 C -0.483 4.483 14 H 0.099 0.901 15 C -0.141 4.141 16 N -0.408 5.408 17 Si 0.733 3.267 18 H -0.182 1.182 19 H -0.198 1.198 20 H -0.195 1.195 21 C -0.177 4.177 22 H 0.079 0.921 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.114 0.886 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.111 0.889 31 H 0.167 0.833 32 H 0.094 0.906 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.467 1.010 -5.118 5.419 hybrid contribution -0.154 -0.511 -0.348 0.637 sum 1.313 0.499 -5.466 5.643 Atomic orbital electron populations 1.21703 0.95692 1.00111 1.02379 1.20395 0.95561 0.94210 1.01000 1.19283 0.98771 0.94680 0.93324 1.19970 1.11588 0.93328 0.96287 1.18101 1.04434 0.94955 0.88096 1.18907 0.98659 0.92335 0.83482 1.86043 1.83224 1.40814 1.12247 1.22916 0.99974 0.93681 0.89833 1.24498 1.19387 1.00748 1.01657 1.83384 1.73851 1.14770 0.96393 1.22407 1.15830 0.96233 0.96342 1.16927 0.89188 0.90940 0.89204 1.19475 1.20543 1.15963 0.92283 0.90064 1.25888 0.93273 0.93399 1.01546 1.69852 1.11503 1.27534 1.31863 0.86233 0.80188 0.79430 0.80862 1.18196 1.19804 1.19506 1.21056 1.06521 0.93862 0.96274 0.92104 0.93101 0.93779 0.92575 0.92054 0.88571 0.93252 0.93263 0.88920 0.83282 0.90626 0.85612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.90 37.16 0.37 -2.05 16 2 C -0.07 -1.38 6.04 -27.88 -0.17 -1.54 16 3 C -0.06 -1.35 5.11 -104.91 -0.54 -1.88 16 4 C -0.19 -4.40 9.71 -38.58 -0.37 -4.78 16 5 C -0.05 -1.19 6.04 -105.31 -0.64 -1.82 16 6 C 0.12 2.64 6.85 -38.53 -0.26 2.38 16 7 O -0.31 -5.86 10.57 -20.24 -0.21 -6.07 16 8 C 0.03 0.42 9.92 101.05 1.00 1.42 16 9 C -0.33 -6.51 9.94 28.81 0.29 -6.22 16 10 S 0.06 1.23 22.83 -107.50 -2.45 -1.22 16 11 C -0.19 -4.87 6.36 -37.62 -0.24 -5.11 16 12 C 0.14 3.78 5.58 -106.55 -0.60 3.18 16 13 C -0.45 -11.76 8.82 -37.96 -0.33 -12.10 16 14 H 0.08 2.07 7.76 -52.49 -0.41 1.66 16 15 C 0.08 1.90 5.13 -17.34 -0.09 1.81 16 16 N -0.78 -19.39 10.99 55.54 0.61 -18.78 16 17 Si 0.91 18.17 29.59 -169.99 -5.03 13.14 16 18 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 19 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 20 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 21 C -0.15 -3.87 8.30 -38.89 -0.32 -4.19 16 22 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 23 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.94 8.08 -51.93 -0.42 0.53 16 26 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 27 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 28 H 0.05 0.60 7.83 -51.93 -0.41 0.20 16 29 H 0.05 0.59 7.84 -51.93 -0.41 0.19 16 30 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.15 2.44 6.90 -52.49 -0.36 2.07 16 32 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 33 H 0.13 3.21 6.19 -52.49 -0.32 2.89 16 LS Contribution 294.58 15.07 4.44 4.44 Total: -1.00 -27.76 294.58 -8.55 -36.31 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -3.99 Total: 3.10 kcal Atomic # 6 Polarization: -29.01 SS G_CDS: -1.90 Total: -30.91 kcal Atomic # 7 Polarization: -19.39 SS G_CDS: 0.61 Total: -18.78 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: -0.21 Total: -6.07 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.14 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -2.45 Total: -1.22 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -27.76 -8.55 -36.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396299504.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.722 kcal (2) G-P(sol) polarization free energy of solvation -27.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds