Wall clock time and date at job start Mon Mar 30 2020 06:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50696 * 109.47319 * 2 1 4 4 C 1.37828 * 119.62104 * 269.97713 * 3 2 1 5 5 C 1.41277 * 120.90640 * 179.97438 * 4 3 2 6 6 C 1.45695 * 129.16568 * 179.97438 * 5 4 3 7 7 O 1.36157 * 122.60948 * 0.06719 * 6 5 4 8 8 C 1.42894 * 116.99994 * 179.97438 * 7 6 5 9 9 C 1.32171 * 114.77971 * 180.02562 * 6 5 4 10 10 S 1.75289 * 111.33932 * 359.97438 * 9 6 5 11 11 C 1.39463 * 119.01367 * 0.04835 * 5 4 3 12 12 C 1.42170 * 119.66750 * 359.97438 * 11 5 4 13 13 C 1.40905 * 120.11421 * 179.97438 * 12 11 5 14 14 H 1.08001 * 120.00394 * 334.44790 * 13 12 11 15 15 C 1.39884 * 120.00152 * 154.45453 * 13 12 11 16 16 N 1.30895 * 119.99738 * 342.57626 * 15 13 12 17 17 Si 1.86797 * 119.99984 * 162.57853 * 15 13 12 18 18 H 1.48498 * 109.47406 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47039 * 120.00177 * 17 15 13 20 20 H 1.48503 * 109.46861 * 239.99890 * 17 15 13 21 21 C 1.37874 * 119.61580 * 90.00083 * 3 2 1 22 22 H 1.08990 * 109.46784 * 300.00127 * 1 2 3 23 23 H 1.09004 * 109.46669 * 59.99924 * 1 2 3 24 24 H 1.08995 * 109.47113 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46877 * 240.00025 * 2 1 3 26 26 H 1.08998 * 109.47129 * 120.00598 * 2 1 3 27 27 H 1.07994 * 119.54706 * 359.97438 * 4 3 2 28 28 H 1.08996 * 109.47405 * 300.00615 * 8 7 6 29 29 H 1.09003 * 109.47003 * 59.99996 * 8 7 6 30 30 H 1.09005 * 109.47380 * 180.02562 * 8 7 6 31 31 H 1.07995 * 124.32931 * 180.02562 * 9 6 5 32 32 H 0.96997 * 119.99847 * 180.02562 * 16 15 13 33 33 H 1.07996 * 120.06108 * 359.97438 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2600 2.0629 -1.1982 5 6 2.7303 3.3947 -1.2299 6 6 3.0293 4.2378 -2.3798 7 8 2.8779 3.8090 -3.6632 8 6 3.2061 4.7361 -4.6999 9 6 3.4582 5.4516 -2.0802 10 16 3.5400 5.6891 -0.3454 11 6 2.9649 4.0580 -0.0257 12 6 2.7276 3.3872 1.2051 13 6 2.9620 4.0482 2.4272 14 1 3.6762 4.8569 2.4755 15 6 2.2696 3.6571 3.5780 16 7 1.1825 2.9354 3.4741 17 14 2.8963 4.1647 5.2629 18 1 4.1342 4.9704 5.1085 19 1 1.8606 4.9748 5.9528 20 1 3.1928 2.9518 6.0667 21 6 2.2596 2.0631 1.1986 22 1 -0.3632 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 2.0762 1.5408 -2.1255 28 1 2.5748 5.6201 -4.6100 29 1 4.2528 5.0265 -4.6097 30 1 3.0406 4.2690 -5.6708 31 1 3.7235 6.2013 -2.8108 32 1 0.7022 2.6645 4.2721 33 1 2.0774 1.5492 2.1308 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396299504.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:02 Heat of formation + Delta-G solvation = -31.578772 kcal Electronic energy + Delta-G solvation = -17093.191486 eV Core-core repulsion = 14402.087092 eV Total energy + Delta-G solvation = -2691.104393 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.68662 -39.26687 -35.97937 -35.65201 -33.09161 -31.02326 -29.28057 -28.43389 -27.21635 -24.60721 -23.46699 -22.34400 -20.59796 -19.41132 -18.10455 -17.75859 -16.75167 -16.72795 -16.60297 -15.85070 -15.34680 -14.98469 -14.51951 -14.40358 -14.22290 -13.65737 -13.32236 -13.25064 -12.99507 -12.84422 -12.64647 -12.54708 -12.22375 -12.16253 -11.93043 -11.72952 -11.60442 -11.19620 -11.07162 -10.94867 -9.77993 -9.07997 -8.72468 -8.22602 -6.34537 0.19870 0.80973 1.00576 1.36900 1.40033 1.49006 1.53018 1.74347 2.18808 2.46846 2.67633 3.52559 3.82415 4.21506 4.30422 4.32305 4.40516 4.60028 4.65547 4.67723 4.70241 4.81465 4.91260 5.00364 5.07584 5.11021 5.22047 5.30419 5.45467 5.53342 5.63792 5.88362 6.10308 6.22774 6.45359 6.57089 6.80155 6.87949 8.26375 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.017832 B = 0.008050 C = 0.005714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.845047 B = 3477.288620 C = 4898.900371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.073 4.073 3 C -0.059 4.059 4 C -0.199 4.199 5 C -0.069 4.069 6 C 0.112 3.888 7 O -0.324 6.324 8 C 0.020 3.980 9 C -0.312 4.312 10 S 0.057 5.943 11 C -0.229 4.229 12 C 0.115 3.885 13 C -0.485 4.485 14 H 0.074 0.926 15 C 0.041 3.959 16 N -0.810 5.810 17 Si 0.980 3.020 18 H -0.260 1.260 19 H -0.264 1.264 20 H -0.259 1.259 21 C -0.178 4.178 22 H 0.037 0.963 23 H 0.047 0.953 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.112 0.888 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.124 0.876 31 H 0.188 0.812 32 H 0.292 0.708 33 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.437 0.094 -7.101 7.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.110 4.110 3 C -0.061 4.061 4 C -0.221 4.221 5 C -0.076 4.076 6 C 0.055 3.945 7 O -0.239 6.239 8 C -0.074 4.074 9 C -0.446 4.446 10 S 0.316 5.684 11 C -0.344 4.344 12 C 0.109 3.891 13 C -0.514 4.514 14 H 0.092 0.908 15 C -0.176 4.176 16 N -0.435 5.435 17 Si 0.800 3.200 18 H -0.184 1.184 19 H -0.189 1.189 20 H -0.184 1.184 21 C -0.201 4.201 22 H 0.057 0.943 23 H 0.067 0.933 24 H 0.097 0.903 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.130 0.870 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.142 0.858 31 H 0.206 0.794 32 H 0.103 0.897 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.611 1.065 -6.226 6.518 hybrid contribution -0.209 -0.517 -0.186 0.588 sum 1.402 0.548 -6.412 6.586 Atomic orbital electron populations 1.21636 0.94418 1.01995 1.01126 1.20462 0.96548 0.91693 1.02300 1.19699 0.97356 0.96614 0.92405 1.20261 1.11448 0.93458 0.96972 1.18602 1.03996 0.95704 0.89268 1.18743 0.99252 0.92210 0.84267 1.86017 1.83327 1.42762 1.11794 1.23336 1.01026 0.93761 0.89280 1.24810 1.17871 1.01056 1.00832 1.83229 1.73725 1.13052 0.98420 1.22720 1.16902 0.98178 0.96569 1.17312 0.89849 0.91780 0.90124 1.19638 1.21546 1.16756 0.93451 0.90802 1.26689 0.92977 0.93127 1.04770 1.69887 1.12202 1.28060 1.33363 0.85186 0.79448 0.79337 0.76011 1.18407 1.18863 1.18380 1.21050 1.08352 0.94008 0.96738 0.94330 0.93338 0.90300 0.90350 0.91592 0.87034 0.92097 0.91944 0.85785 0.79442 0.89712 0.86858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.44 9.90 71.98 0.71 -3.73 16 2 C -0.07 -2.64 6.04 29.85 0.18 -2.46 16 3 C -0.06 -2.74 5.11 -20.05 -0.10 -2.84 16 4 C -0.20 -9.32 9.71 22.92 0.22 -9.09 16 5 C -0.07 -3.34 6.04 -20.31 -0.12 -3.47 16 6 C 0.11 4.68 6.85 23.19 0.16 4.84 16 7 O -0.32 -11.60 10.57 -95.34 -1.01 -12.61 16 8 C 0.02 0.46 9.92 113.37 1.12 1.59 16 9 C -0.31 -11.78 9.94 66.81 0.66 -11.12 16 10 S 0.06 2.47 22.83 -56.49 -1.29 1.18 16 11 C -0.23 -11.86 6.36 23.54 0.15 -11.71 16 12 C 0.11 6.32 5.58 -21.12 -0.12 6.20 16 13 C -0.49 -26.17 8.82 23.32 0.21 -25.96 16 14 H 0.07 3.94 7.76 -2.91 -0.02 3.91 16 15 C 0.04 2.04 5.13 85.23 0.44 2.48 16 16 N -0.81 -41.22 10.99 21.82 0.24 -40.98 16 17 Si 0.98 37.68 29.59 68.60 2.03 39.72 16 18 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 19 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 20 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 21 C -0.18 -9.33 8.30 22.72 0.19 -9.14 16 22 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 24 H 0.08 2.04 8.14 -2.39 -0.02 2.03 16 25 H 0.08 2.48 8.08 -2.38 -0.02 2.46 16 26 H 0.07 2.31 8.08 -2.39 -0.02 2.29 16 27 H 0.11 4.74 8.06 -2.91 -0.02 4.71 16 28 H 0.06 1.26 7.83 -2.39 -0.02 1.24 16 29 H 0.06 1.28 7.84 -2.39 -0.02 1.26 16 30 H 0.12 2.05 8.14 -2.38 -0.02 2.03 16 31 H 0.19 5.46 6.90 -2.91 -0.02 5.44 16 32 H 0.29 13.27 8.30 -92.71 -0.77 12.50 16 33 H 0.11 6.07 6.19 -2.91 -0.02 6.05 16 Total: -1.00 -62.01 294.58 4.79 -57.23 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 1.11 Total: 19.87 kcal Atomic # 6 Polarization: -68.11 SS G_CDS: 3.70 Total: -64.41 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: 0.24 Total: -40.98 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: -1.01 Total: -12.61 kcal Atomic # 14 Polarization: 37.68 SS G_CDS: 2.03 Total: 39.72 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -1.29 Total: 1.18 kcal Total: -62.01 4.79 -57.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396299504.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.647 kcal (2) G-P(sol) polarization free energy of solvation -62.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds