Wall clock time and date at job start Mon Mar 30 2020 06:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50695 * 109.47161 * 2 1 4 4 C 1.35953 * 119.67531 * 90.00472 * 3 2 1 5 5 C 1.41888 * 120.47933 * 179.97438 * 4 3 2 6 6 C 1.39799 * 128.54711 * 179.97438 * 5 4 3 7 7 C 1.36939 * 115.02876 * 180.02562 * 6 5 4 8 8 C 1.39928 * 124.82650 * 180.02562 * 7 6 5 9 9 H 1.07997 * 119.99906 * 359.97438 * 8 7 6 10 10 C 1.40185 * 120.00182 * 179.97438 * 8 7 6 11 11 N 1.30756 * 119.99859 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 119.99928 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47395 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47297 * 120.00465 * 12 10 8 15 15 H 1.48503 * 109.47016 * 240.00049 * 12 10 8 16 16 S 1.75459 * 110.35093 * 359.97438 * 7 6 5 17 17 C 1.40372 * 118.57931 * 0.02562 * 5 4 3 18 18 C 1.39603 * 119.76916 * 0.02562 * 17 5 4 19 19 C 1.50705 * 119.85458 * 180.02562 * 18 17 5 20 20 O 1.42895 * 109.47023 * 179.97438 * 19 18 17 21 21 C 1.37698 * 120.28918 * 359.95820 * 18 17 5 22 22 H 1.09006 * 109.47186 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47059 * 299.99917 * 1 2 3 24 24 H 1.09001 * 109.47762 * 59.99758 * 1 2 3 25 25 H 1.09004 * 109.47059 * 240.00083 * 2 1 3 26 26 H 1.08996 * 109.47321 * 120.00084 * 2 1 3 27 27 H 1.08007 * 119.76013 * 359.97438 * 4 3 2 28 28 H 1.08003 * 122.48711 * 0.02867 * 6 5 4 29 29 H 0.97000 * 120.00293 * 180.02562 * 11 10 8 30 30 H 1.08999 * 109.47258 * 299.93948 * 19 18 17 31 31 H 1.09006 * 109.46788 * 59.93855 * 19 18 17 32 32 H 0.96707 * 114.00366 * 180.02562 * 20 19 18 33 33 H 1.07993 * 119.88904 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2567 2.0553 1.1812 5 6 2.7302 3.3927 1.2011 6 6 3.0151 4.1996 2.3066 7 6 3.4606 5.4590 2.0052 8 6 3.8049 6.4322 2.9498 9 1 3.7269 6.2126 4.0044 10 6 4.2511 7.6922 2.5274 11 7 4.3450 7.9582 1.2506 12 14 4.7101 8.9916 3.7884 13 1 4.5152 8.4453 5.1555 14 1 6.1327 9.3769 3.6069 15 1 3.8467 10.1858 3.6054 16 16 3.5395 5.6784 0.2662 17 6 2.9596 4.0421 -0.0220 18 6 2.7199 3.3676 -1.2206 19 6 2.9662 4.0628 -2.5348 20 8 2.6515 3.1751 -3.6095 21 6 2.2608 2.0695 -1.2071 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3635 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 2.0733 1.5376 2.1112 28 1 2.8931 3.8553 3.3230 29 1 4.6541 8.8299 0.9582 30 1 2.3360 4.9497 -2.6005 31 1 4.0140 4.3560 -2.6000 32 1 2.7871 3.5568 -4.4876 33 1 2.0779 1.5537 -2.1381 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396299697.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:33 Heat of formation + Delta-G solvation = -50.792857 kcal Electronic energy + Delta-G solvation = -16783.674501 eV Core-core repulsion = 14091.736922 eV Total energy + Delta-G solvation = -2691.937579 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.65097 -36.42340 -35.18957 -33.98813 -32.27392 -29.83503 -28.54555 -25.62147 -25.07962 -23.42350 -21.48944 -19.91859 -18.70832 -17.89590 -16.79942 -15.90946 -15.34669 -14.57681 -14.50861 -14.31393 -13.69817 -13.40151 -13.26905 -12.74410 -12.53829 -12.17290 -11.88773 -11.65151 -11.50532 -11.44634 -11.22487 -10.76783 -10.64058 -10.49736 -10.32608 -10.01519 -9.86681 -9.80628 -9.20982 -9.03635 -8.15911 -7.31343 -7.17721 -6.33387 -4.67168 2.09484 2.41155 2.80568 2.84484 2.91947 3.28600 3.57680 3.58263 3.85419 4.60732 4.63747 5.06431 5.38505 5.43055 5.63612 5.80063 5.84021 5.96509 6.06776 6.14639 6.23571 6.33707 6.38687 6.55807 6.67105 6.82456 6.88158 7.20501 7.33943 7.38981 7.52550 7.61811 7.79613 7.91618 7.98522 8.13799 8.35510 8.43675 9.65886 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.027575 B = 0.005897 C = 0.004945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.172366 B = 4747.258171 C = 5660.720932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.077 4.077 3 C -0.078 4.078 4 C -0.147 4.147 5 C 0.021 3.979 6 C -0.365 4.365 7 C 0.057 3.943 8 C -0.387 4.387 9 H 0.098 0.902 10 C 0.054 3.946 11 N -0.780 5.780 12 Si 0.937 3.063 13 H -0.256 1.256 14 H -0.268 1.268 15 H -0.268 1.268 16 S 0.133 5.867 17 C -0.263 4.263 18 C -0.031 4.031 19 C 0.120 3.880 20 O -0.569 6.569 21 C -0.164 4.164 22 H 0.048 0.952 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.300 0.700 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.372 0.628 33 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.473 -2.866 -3.976 5.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.114 4.114 3 C -0.080 4.080 4 C -0.167 4.167 5 C 0.013 3.987 6 C -0.390 4.390 7 C -0.063 4.063 8 C -0.421 4.421 9 H 0.116 0.884 10 C -0.167 4.167 11 N -0.406 5.406 12 Si 0.760 3.240 13 H -0.179 1.179 14 H -0.193 1.193 15 H -0.193 1.193 16 S 0.393 5.607 17 C -0.378 4.378 18 C -0.036 4.036 19 C 0.042 3.958 20 O -0.373 6.373 21 C -0.184 4.184 22 H 0.067 0.933 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.118 0.882 28 H 0.123 0.877 29 H 0.113 0.887 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.218 0.782 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.129 -1.886 -4.508 5.016 hybrid contribution -0.055 -0.149 1.041 1.053 sum -1.184 -2.036 -3.468 4.191 Atomic orbital electron populations 1.21725 0.95629 1.00524 1.02151 1.20427 0.95536 0.93939 1.01506 1.19022 1.00578 0.95097 0.93319 1.20383 1.05749 0.94251 0.96315 1.17929 0.95609 0.93093 0.92031 1.19582 1.27146 0.95591 0.96668 1.21410 0.94459 0.95227 0.95157 1.19346 1.33014 0.94615 0.95153 0.88361 1.26300 0.93372 1.00351 0.96693 1.68634 1.32205 1.24129 1.15659 0.85729 0.78998 0.78814 0.80415 1.17908 1.19259 1.19267 1.84660 1.69357 1.04106 1.02588 1.23348 1.15133 1.04009 0.95296 1.18707 1.00047 0.94192 0.90662 1.20893 0.98697 0.91077 0.85099 1.86480 1.90939 1.43230 1.16673 1.20161 1.07162 0.94632 0.96424 0.93338 0.92763 0.92725 0.91957 0.92051 0.88247 0.87652 0.88716 0.92824 0.92806 0.78208 0.86865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.89 37.15 0.37 -1.67 16 2 C -0.08 -1.22 6.04 -27.89 -0.17 -1.39 16 3 C -0.08 -1.58 5.08 -105.19 -0.53 -2.11 16 4 C -0.15 -3.28 9.65 -39.01 -0.38 -3.66 16 5 C 0.02 0.53 5.86 -107.11 -0.63 -0.09 16 6 C -0.36 -9.47 10.14 -39.47 -0.40 -9.87 16 7 C 0.06 1.49 6.11 -39.42 -0.24 1.25 16 8 C -0.39 -9.66 9.27 -38.22 -0.35 -10.01 16 9 H 0.10 2.33 7.85 -52.49 -0.41 1.91 16 10 C 0.05 1.23 5.50 -17.28 -0.10 1.13 16 11 N -0.78 -18.20 10.58 55.56 0.59 -17.61 16 12 Si 0.94 16.95 29.56 -169.99 -5.03 11.93 16 13 H -0.26 -4.58 7.11 56.52 0.40 -4.18 16 14 H -0.27 -4.75 7.11 56.52 0.40 -4.34 16 15 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 16 S 0.13 3.28 19.80 -107.50 -2.13 1.15 16 17 C -0.26 -6.46 6.31 -38.27 -0.24 -6.70 16 18 C -0.03 -0.70 5.90 -104.31 -0.62 -1.31 16 19 C 0.12 2.18 7.11 36.01 0.26 2.44 16 20 O -0.57 -9.08 12.11 -35.23 -0.43 -9.51 16 21 C -0.16 -3.45 9.02 -39.52 -0.36 -3.80 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 26 H 0.06 0.91 8.07 -51.93 -0.42 0.49 16 27 H 0.10 2.03 8.06 -52.48 -0.42 1.61 16 28 H 0.11 2.62 8.06 -52.48 -0.42 2.20 16 29 H 0.30 6.21 8.29 -40.82 -0.34 5.87 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.37 3.81 9.12 45.56 0.42 4.23 16 33 H 0.11 2.25 6.97 -52.49 -0.37 1.88 16 LS Contribution 294.47 15.07 4.44 4.44 Total: -1.00 -28.40 294.47 -9.24 -37.64 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -3.29 Total: 7.77 kcal Atomic # 6 Polarization: -32.42 SS G_CDS: -3.39 Total: -35.80 kcal Atomic # 7 Polarization: -18.20 SS G_CDS: 0.59 Total: -17.61 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: -0.43 Total: -9.51 kcal Atomic # 14 Polarization: 16.95 SS G_CDS: -5.03 Total: 11.93 kcal Atomic # 16 Polarization: 3.28 SS G_CDS: -2.13 Total: 1.15 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.40 -9.24 -37.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396299697.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.152 kcal (2) G-P(sol) polarization free energy of solvation -28.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds