Wall clock time and date at job start Mon Mar 30 2020 06:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50695 * 109.47161 * 2 1 4 4 C 1.35953 * 119.67531 * 90.00472 * 3 2 1 5 5 C 1.41888 * 120.47933 * 179.97438 * 4 3 2 6 6 C 1.39799 * 128.54711 * 179.97438 * 5 4 3 7 7 C 1.36939 * 115.02876 * 180.02562 * 6 5 4 8 8 C 1.39928 * 124.82650 * 180.02562 * 7 6 5 9 9 H 1.07997 * 119.99906 * 359.97438 * 8 7 6 10 10 C 1.40185 * 120.00182 * 179.97438 * 8 7 6 11 11 N 1.30756 * 119.99859 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 119.99928 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47395 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47297 * 120.00465 * 12 10 8 15 15 H 1.48503 * 109.47016 * 240.00049 * 12 10 8 16 16 S 1.75459 * 110.35093 * 359.97438 * 7 6 5 17 17 C 1.40372 * 118.57931 * 0.02562 * 5 4 3 18 18 C 1.39603 * 119.76916 * 0.02562 * 17 5 4 19 19 C 1.50705 * 119.85458 * 180.02562 * 18 17 5 20 20 O 1.42895 * 109.47023 * 179.97438 * 19 18 17 21 21 C 1.37698 * 120.28918 * 359.95820 * 18 17 5 22 22 H 1.09006 * 109.47186 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47059 * 299.99917 * 1 2 3 24 24 H 1.09001 * 109.47762 * 59.99758 * 1 2 3 25 25 H 1.09004 * 109.47059 * 240.00083 * 2 1 3 26 26 H 1.08996 * 109.47321 * 120.00084 * 2 1 3 27 27 H 1.08007 * 119.76013 * 359.97438 * 4 3 2 28 28 H 1.08003 * 122.48711 * 0.02867 * 6 5 4 29 29 H 0.97000 * 120.00293 * 180.02562 * 11 10 8 30 30 H 1.08999 * 109.47258 * 299.93948 * 19 18 17 31 31 H 1.09006 * 109.46788 * 59.93855 * 19 18 17 32 32 H 0.96707 * 114.00366 * 180.02562 * 20 19 18 33 33 H 1.07993 * 119.88904 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2567 2.0553 1.1812 5 6 2.7302 3.3927 1.2011 6 6 3.0151 4.1996 2.3066 7 6 3.4606 5.4590 2.0052 8 6 3.8049 6.4322 2.9498 9 1 3.7269 6.2126 4.0044 10 6 4.2511 7.6922 2.5274 11 7 4.3450 7.9582 1.2506 12 14 4.7101 8.9916 3.7884 13 1 4.5152 8.4453 5.1555 14 1 6.1327 9.3769 3.6069 15 1 3.8467 10.1858 3.6054 16 16 3.5395 5.6784 0.2662 17 6 2.9596 4.0421 -0.0220 18 6 2.7199 3.3676 -1.2206 19 6 2.9662 4.0628 -2.5348 20 8 2.6515 3.1751 -3.6095 21 6 2.2608 2.0695 -1.2071 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3635 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 2.0733 1.5376 2.1112 28 1 2.8931 3.8553 3.3230 29 1 4.6541 8.8299 0.9582 30 1 2.3360 4.9497 -2.6005 31 1 4.0140 4.3560 -2.6000 32 1 2.7871 3.5568 -4.4876 33 1 2.0779 1.5537 -2.1381 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396299697.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:32 Heat of formation + Delta-G solvation = -66.926273 kcal Electronic energy + Delta-G solvation = -16784.374098 eV Core-core repulsion = 14091.736922 eV Total energy + Delta-G solvation = -2692.637176 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.32914 -37.81762 -36.90860 -35.63171 -33.86077 -31.46042 -30.19125 -27.34132 -26.70324 -24.87756 -23.20632 -21.52708 -20.43652 -19.67962 -18.25239 -17.62621 -16.95974 -16.17904 -15.93220 -15.81162 -15.41003 -14.88131 -14.63908 -14.27206 -14.13766 -13.85288 -13.43400 -13.35696 -13.13072 -12.94531 -12.66318 -12.30779 -12.04609 -11.97079 -11.90312 -11.61000 -11.50501 -11.27193 -10.90974 -10.87650 -9.90651 -9.14703 -8.92434 -8.18429 -6.56781 0.32234 0.67704 1.31151 1.34798 1.42560 1.54490 1.84673 1.89249 2.13522 2.83215 3.23914 3.36191 3.99349 4.03017 4.27075 4.43547 4.51146 4.56690 4.61178 4.66934 4.78248 4.90123 4.95059 5.06674 5.12005 5.23138 5.39469 5.45808 5.52620 5.57360 5.82844 5.89530 5.97180 6.09811 6.34371 6.52482 6.57365 6.92510 7.94956 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.027575 B = 0.005897 C = 0.004945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.172366 B = 4747.258171 C = 5660.720932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.075 4.075 3 C -0.070 4.070 4 C -0.166 4.166 5 C -0.005 4.005 6 C -0.397 4.397 7 C 0.026 3.974 8 C -0.416 4.416 9 H 0.100 0.900 10 C 0.018 3.982 11 N -0.800 5.800 12 Si 1.013 2.987 13 H -0.255 1.255 14 H -0.257 1.257 15 H -0.257 1.257 16 S 0.129 5.871 17 C -0.287 4.287 18 C -0.046 4.046 19 C 0.128 3.872 20 O -0.574 6.574 21 C -0.165 4.165 22 H 0.079 0.921 23 H 0.043 0.957 24 H 0.049 0.951 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.110 0.890 28 H 0.099 0.901 29 H 0.313 0.687 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.399 0.601 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.588 -3.105 -4.827 5.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.113 4.113 3 C -0.072 4.072 4 C -0.186 4.186 5 C -0.013 4.013 6 C -0.422 4.422 7 C -0.093 4.093 8 C -0.449 4.449 9 H 0.118 0.882 10 C -0.200 4.200 11 N -0.426 5.426 12 Si 0.831 3.169 13 H -0.178 1.178 14 H -0.181 1.181 15 H -0.181 1.181 16 S 0.388 5.612 17 C -0.401 4.401 18 C -0.051 4.051 19 C 0.051 3.949 20 O -0.383 6.383 21 C -0.185 4.185 22 H 0.098 0.902 23 H 0.062 0.938 24 H 0.068 0.932 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.128 0.872 28 H 0.117 0.883 29 H 0.126 0.874 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.249 0.751 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.253 -2.149 -5.407 5.951 hybrid contribution -0.046 -0.161 1.188 1.200 sum -1.299 -2.310 -4.219 4.982 Atomic orbital electron populations 1.21693 0.94126 1.02384 1.01429 1.20521 0.96702 0.91028 1.03027 1.19526 0.98333 0.97104 0.92238 1.20604 1.06566 0.93561 0.97852 1.18246 0.96435 0.94474 0.92128 1.19707 1.29240 0.96359 0.96878 1.21790 0.95226 0.95863 0.96427 1.19679 1.34202 0.95849 0.95193 0.88247 1.27279 0.92320 1.01614 0.98821 1.68648 1.31371 1.25331 1.17233 0.84645 0.79142 0.75697 0.77378 1.17829 1.18099 1.18121 1.84305 1.70118 1.04981 1.01784 1.23551 1.16377 1.04023 0.96191 1.19199 0.99310 0.94846 0.91704 1.20682 0.99080 0.90890 0.84288 1.86397 1.90888 1.43153 1.17815 1.20509 1.06228 0.94371 0.97418 0.90211 0.93783 0.93191 0.90160 0.90840 0.87173 0.88256 0.87351 0.92304 0.92271 0.75087 0.85105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 9.89 71.98 0.71 -2.87 16 2 C -0.08 -2.21 6.04 29.84 0.18 -2.03 16 3 C -0.07 -2.75 5.08 -20.23 -0.10 -2.86 16 4 C -0.17 -7.50 9.65 22.64 0.22 -7.28 16 5 C -0.01 -0.28 5.86 -21.48 -0.13 -0.40 16 6 C -0.40 -21.76 10.14 22.34 0.23 -21.54 16 7 C 0.03 1.43 6.11 22.37 0.14 1.57 16 8 C -0.42 -21.43 9.27 23.15 0.21 -21.21 16 9 H 0.10 4.89 7.85 -2.91 -0.02 4.87 16 10 C 0.02 0.84 5.50 85.33 0.47 1.31 16 11 N -0.80 -37.40 10.58 21.87 0.23 -37.17 16 12 Si 1.01 33.98 29.56 68.60 2.03 36.01 16 13 H -0.26 -8.45 7.11 99.48 0.71 -7.74 16 14 H -0.26 -8.14 7.11 99.48 0.71 -7.44 16 15 H -0.26 -8.15 7.11 99.48 0.71 -7.45 16 16 S 0.13 6.56 19.80 -56.49 -1.12 5.44 16 17 C -0.29 -14.44 6.31 23.12 0.15 -14.29 16 18 C -0.05 -2.02 5.90 -19.66 -0.12 -2.14 16 19 C 0.13 4.53 7.11 71.24 0.51 5.03 16 20 O -0.57 -16.85 12.11 -148.98 -1.80 -18.66 16 21 C -0.17 -6.74 9.02 22.31 0.20 -6.54 16 22 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 23 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 24 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.08 2.09 8.08 -2.38 -0.02 2.07 16 26 H 0.07 1.99 8.07 -2.39 -0.02 1.97 16 27 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 28 H 0.10 5.30 8.06 -2.91 -0.02 5.27 16 29 H 0.31 12.76 8.29 -92.71 -0.77 11.99 16 30 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 32 H 0.40 6.96 9.12 -74.05 -0.68 6.28 16 33 H 0.13 4.85 6.97 -2.91 -0.02 4.83 16 Total: -1.00 -62.81 294.47 2.45 -60.36 By element: Atomic # 1 Polarization: 26.82 SS G_CDS: 0.45 Total: 27.27 kcal Atomic # 6 Polarization: -75.91 SS G_CDS: 2.67 Total: -73.24 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.23 Total: -37.17 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -1.80 Total: -18.66 kcal Atomic # 14 Polarization: 33.98 SS G_CDS: 2.03 Total: 36.01 kcal Atomic # 16 Polarization: 6.56 SS G_CDS: -1.12 Total: 5.44 kcal Total: -62.81 2.45 -60.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396299697.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.569 kcal (2) G-P(sol) polarization free energy of solvation -62.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds