Wall clock time and date at job start Mon Mar 30 2020 06:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47023 * 2 1 4 4 C 1.37476 * 119.86352 * 90.00635 * 3 2 1 5 5 C 1.40550 * 120.31116 * 179.97438 * 4 3 2 6 6 C 1.46638 * 129.53583 * 179.97438 * 5 4 3 7 7 C 1.40804 * 123.30130 * 359.97438 * 6 5 4 8 8 H 1.07997 * 120.00188 * 22.38902 * 7 6 5 9 9 C 1.39723 * 119.99625 * 202.39296 * 7 6 5 10 10 N 1.31066 * 120.00352 * 11.08938 * 9 7 6 11 11 Si 1.86800 * 119.99757 * 191.08827 * 9 7 6 12 12 H 1.48502 * 109.47080 * 90.00183 * 11 9 7 13 13 H 1.48506 * 109.47174 * 210.00130 * 11 9 7 14 14 H 1.48497 * 109.47491 * 330.00175 * 11 9 7 15 15 C 1.36438 * 113.40126 * 179.97438 * 6 5 4 16 16 S 1.69985 * 111.96385 * 359.97438 * 15 6 5 17 17 C 1.39382 * 119.23823 * 359.97307 * 5 4 3 18 18 C 1.39790 * 119.62641 * 0.02562 * 17 5 4 19 19 C 1.50696 * 119.81743 * 179.97438 * 18 17 5 20 20 O 1.42905 * 109.47224 * 180.02562 * 19 18 17 21 21 C 1.37651 * 120.36467 * 0.25636 * 18 17 5 22 22 H 1.08998 * 109.47202 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47271 * 299.99958 * 1 2 3 24 24 H 1.09008 * 109.47127 * 59.99451 * 1 2 3 25 25 H 1.09000 * 109.46797 * 239.99865 * 2 1 3 26 26 H 1.09001 * 109.46556 * 120.00206 * 2 1 3 27 27 H 1.08000 * 119.84426 * 359.96879 * 4 3 2 28 28 H 0.97003 * 119.99904 * 179.97438 * 10 9 7 29 29 H 1.08002 * 124.02057 * 179.97438 * 15 6 5 30 30 H 1.09000 * 109.47413 * 60.00427 * 19 18 17 31 31 H 1.09000 * 109.47338 * 299.99756 * 19 18 17 32 32 H 0.96695 * 114.00739 * 180.02562 * 20 19 18 33 33 H 1.07995 * 119.90347 * 179.72103 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2606 2.0662 1.1922 5 6 2.7296 3.3911 1.2032 6 6 3.0375 4.2629 2.3414 7 6 2.8942 3.8617 3.6834 8 1 2.8999 2.8119 3.9368 9 6 2.7444 4.8219 4.6873 10 7 2.5196 6.0733 4.3690 11 14 2.8648 4.3221 6.4832 12 1 4.2756 4.4310 6.9338 13 1 2.0121 5.2184 7.3047 14 1 2.4024 2.9195 6.6388 15 6 3.4765 5.5009 1.9725 16 16 3.5406 5.6753 0.2828 17 6 2.9606 4.0415 -0.0077 18 6 2.7227 3.3690 -1.2098 19 6 2.9704 4.0683 -2.5215 20 8 2.6569 3.1841 -3.5995 21 6 2.2578 2.0733 -1.2021 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5140 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8932 -0.5139 0.8900 27 1 2.0786 1.5527 2.1248 28 1 2.4153 6.7398 5.0661 29 1 3.7508 6.2777 2.6709 30 1 4.0183 4.3615 -2.5847 31 1 2.3404 4.9555 -2.5849 32 1 2.7935 3.5686 -4.4761 33 1 2.0723 1.5623 -2.1352 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396300239.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:53 Heat of formation + Delta-G solvation = -53.631455 kcal Electronic energy + Delta-G solvation = -16955.379912 eV Core-core repulsion = 14263.319243 eV Total energy + Delta-G solvation = -2692.060670 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.58407 -37.87454 -36.97977 -35.08380 -33.62435 -31.23208 -29.65742 -28.17092 -26.59426 -24.84637 -23.44551 -21.58913 -20.81126 -18.70588 -18.33672 -17.97028 -16.97137 -16.22186 -15.96857 -15.75675 -15.49702 -14.88915 -14.71145 -14.41192 -14.23497 -13.78555 -13.36643 -13.14824 -13.02404 -12.80562 -12.60403 -12.48721 -12.30667 -11.92948 -11.76367 -11.60029 -11.50715 -11.17397 -11.11177 -10.98304 -9.91993 -9.04187 -8.60733 -8.40932 -6.29430 0.23033 0.39250 1.15188 1.28834 1.35916 1.49209 1.90377 1.97088 2.21654 2.76035 3.30203 3.37020 3.89577 3.93418 4.17844 4.34828 4.41832 4.51975 4.54793 4.59585 4.66051 4.80753 5.05715 5.07097 5.10644 5.20067 5.27766 5.41418 5.43250 5.53113 5.71497 5.76980 5.97962 6.17997 6.52059 6.82274 6.93442 6.94143 8.39698 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.019710 B = 0.007141 C = 0.005397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.288264 B = 3920.243903 C = 5187.083160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.074 4.074 3 C -0.097 4.097 4 C -0.092 4.092 5 C -0.093 4.093 6 C 0.052 3.948 7 C -0.467 4.467 8 H 0.075 0.925 9 C 0.023 3.977 10 N -0.835 5.835 11 Si 0.988 3.012 12 H -0.264 1.264 13 H -0.269 1.269 14 H -0.256 1.256 15 C -0.386 4.386 16 S 0.060 5.940 17 C -0.156 4.156 18 C -0.080 4.080 19 C 0.129 3.871 20 O -0.575 6.575 21 C -0.092 4.092 22 H 0.079 0.921 23 H 0.040 0.960 24 H 0.053 0.947 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.115 0.885 28 H 0.283 0.717 29 H 0.137 0.863 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.402 0.598 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.254 -7.105 -10.063 12.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 C -0.100 4.100 4 C -0.111 4.111 5 C -0.103 4.103 6 C 0.043 3.957 7 C -0.500 4.500 8 H 0.093 0.907 9 C -0.189 4.189 10 N -0.462 5.462 11 Si 0.809 3.191 12 H -0.189 1.189 13 H -0.194 1.194 14 H -0.180 1.180 15 C -0.522 4.522 16 S 0.322 5.678 17 C -0.271 4.271 18 C -0.086 4.086 19 C 0.052 3.948 20 O -0.383 6.383 21 C -0.112 4.112 22 H 0.098 0.902 23 H 0.059 0.941 24 H 0.073 0.927 25 H 0.107 0.893 26 H 0.092 0.908 27 H 0.133 0.867 28 H 0.093 0.907 29 H 0.155 0.845 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.253 0.747 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.998 -6.003 -10.298 11.961 hybrid contribution -0.151 -0.174 1.819 1.834 sum -1.149 -6.177 -8.479 10.553 Atomic orbital electron populations 1.21732 0.94243 1.02520 1.01495 1.20513 0.96544 0.90462 1.03589 1.19965 1.00434 0.97819 0.91828 1.20855 0.99513 0.92414 0.98358 1.19836 1.01927 0.95837 0.92652 1.17800 0.93704 0.91260 0.92909 1.19262 1.45082 0.94514 0.91096 0.90694 1.26731 0.91960 0.94328 1.05907 1.69956 1.36210 1.03394 1.36658 0.85112 0.79146 0.79427 0.75461 1.18909 1.19395 1.17968 1.24277 1.26209 1.05296 0.96389 1.81236 1.73141 1.10185 1.03218 1.22573 1.08764 0.99433 0.96352 1.19336 1.02060 0.95365 0.91856 1.20669 0.99650 0.90900 0.83616 1.86364 1.90928 1.43165 1.17890 1.20793 0.99059 0.93362 0.98029 0.90217 0.94116 0.92748 0.89252 0.90812 0.86679 0.90688 0.84547 0.91570 0.91822 0.74710 0.83307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 9.89 71.98 0.71 -2.65 16 2 C -0.07 -1.92 6.05 29.85 0.18 -1.74 16 3 C -0.10 -3.43 5.12 -19.95 -0.10 -3.53 16 4 C -0.09 -3.97 9.50 22.65 0.22 -3.75 16 5 C -0.09 -4.70 6.02 -20.25 -0.12 -4.82 16 6 C 0.05 2.98 5.69 -20.88 -0.12 2.86 16 7 C -0.47 -26.24 9.07 23.26 0.21 -26.02 16 8 H 0.07 4.02 7.69 -2.91 -0.02 4.00 16 9 C 0.02 1.23 5.36 85.17 0.46 1.68 16 10 N -0.83 -46.32 10.79 21.80 0.24 -46.08 16 11 Si 0.99 40.13 29.57 68.60 2.03 42.16 16 12 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 13 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 14 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 15 C -0.39 -21.65 9.51 67.40 0.64 -21.01 16 16 S 0.06 2.76 22.63 -56.49 -1.28 1.48 16 17 C -0.16 -7.13 6.28 22.92 0.14 -6.99 16 18 C -0.08 -3.03 5.91 -19.63 -0.12 -3.15 16 19 C 0.13 3.71 7.10 71.23 0.51 4.22 16 20 O -0.57 -13.42 12.11 -148.98 -1.80 -15.23 16 21 C -0.09 -3.21 9.01 22.22 0.20 -3.01 16 22 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 25 H 0.09 1.93 8.09 -2.39 -0.02 1.91 16 26 H 0.07 1.83 8.08 -2.39 -0.02 1.81 16 27 H 0.12 4.85 7.89 -2.91 -0.02 4.83 16 28 H 0.28 14.26 8.30 -92.71 -0.77 13.49 16 29 H 0.14 8.19 6.26 -2.91 -0.02 8.18 16 30 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.40 4.84 9.12 -74.06 -0.68 4.17 16 33 H 0.15 4.45 6.97 -2.91 -0.02 4.43 16 Total: -1.00 -66.69 294.06 2.45 -64.25 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.46 Total: 21.33 kcal Atomic # 6 Polarization: -70.72 SS G_CDS: 2.81 Total: -67.92 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: 0.24 Total: -46.08 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -1.80 Total: -15.23 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.16 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -1.28 Total: 1.48 kcal Total: -66.69 2.45 -64.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396300239.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.618 kcal (2) G-P(sol) polarization free energy of solvation -66.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds