Wall clock time and date at job start Mon Mar 30 2020 06:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.47356 * 2 1 4 4 C 1.35787 * 119.70620 * 264.99908 * 3 2 1 5 5 C 1.41988 * 120.55885 * 179.97438 * 4 3 2 6 6 C 1.39719 * 128.46276 * 180.02562 * 5 4 3 7 7 C 1.36982 * 115.04957 * 179.97438 * 6 5 4 8 8 C 1.39882 * 124.82227 * 180.02562 * 7 6 5 9 9 H 1.07999 * 119.99703 * 353.27948 * 8 7 6 10 10 C 1.40114 * 120.00059 * 173.27841 * 8 7 6 11 11 N 1.30807 * 119.99715 * 6.61620 * 10 8 7 12 12 Si 1.86793 * 119.99950 * 186.61414 * 10 8 7 13 13 H 1.48504 * 109.47455 * 94.98797 * 12 10 8 14 14 H 1.48501 * 109.47399 * 214.99005 * 12 10 8 15 15 H 1.48500 * 109.47339 * 334.98519 * 12 10 8 16 16 S 1.75455 * 110.35619 * 0.02562 * 7 6 5 17 17 C 1.40455 * 118.67667 * 359.97438 * 5 4 3 18 18 C 1.39415 * 119.83383 * 0.03577 * 17 5 4 19 19 C 1.38310 * 120.24549 * 359.67470 * 18 17 5 20 20 O 1.35793 * 119.95291 * 180.28616 * 19 18 17 21 21 C 1.42902 * 116.99746 * 0.29282 * 20 19 18 22 22 H 1.08996 * 109.47315 * 300.00198 * 1 2 3 23 23 H 1.09009 * 109.46967 * 60.00262 * 1 2 3 24 24 H 1.08998 * 109.47438 * 179.97438 * 1 2 3 25 25 H 1.09009 * 109.46519 * 120.00031 * 2 1 3 26 26 H 1.09005 * 109.47419 * 239.99643 * 2 1 3 27 27 H 1.08009 * 119.72441 * 359.95275 * 4 3 2 28 28 H 1.07998 * 122.47225 * 359.94739 * 6 5 4 29 29 H 0.97002 * 119.99699 * 179.97438 * 11 10 8 30 30 H 1.07997 * 119.87698 * 180.02562 * 18 17 5 31 31 H 1.08999 * 109.47229 * 299.99834 * 21 20 19 32 32 H 1.09000 * 109.47007 * 59.99885 * 21 20 19 33 33 H 1.08996 * 109.47179 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3536 2.0209 -1.1749 5 6 2.8281 3.3590 -1.1960 6 6 3.2028 4.1309 -2.2987 7 6 3.6231 5.4005 -2.0020 8 6 4.0430 6.3438 -2.9457 9 1 4.1546 6.0588 -3.9813 10 6 4.3186 7.6585 -2.5472 11 7 4.3094 7.9726 -1.2774 12 14 4.6993 8.9626 -3.8292 13 1 3.4566 9.7019 -4.1676 14 1 5.7069 9.9098 -3.2879 15 1 5.2372 8.3131 -5.0515 16 16 3.5600 5.6752 -0.2703 17 6 2.9574 4.0475 0.0213 18 6 2.6222 3.4125 1.2163 19 6 2.1568 2.1101 1.2065 20 8 1.8265 1.4993 2.3734 21 6 1.9787 2.2634 3.5713 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8932 -0.5139 0.8901 26 1 1.8934 -0.5139 -0.8900 27 1 2.2476 1.4757 -2.1013 28 1 3.1643 3.7543 -3.3101 29 1 4.5006 8.8827 -1.0015 30 1 2.7210 3.9414 2.1527 31 1 3.0212 2.5620 3.6819 32 1 1.3499 3.1521 3.5177 33 1 1.6816 1.6588 4.4282 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396302125.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:38 Heat of formation + Delta-G solvation = -46.919502 kcal Electronic energy + Delta-G solvation = -16838.166288 eV Core-core repulsion = 14146.396671 eV Total energy + Delta-G solvation = -2691.769617 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.93910 -38.64767 -36.69789 -35.53799 -33.44740 -30.73727 -30.14897 -28.48872 -26.48996 -24.89049 -23.08818 -22.59573 -20.42364 -19.85527 -18.81110 -17.44480 -16.70617 -16.48431 -16.41345 -15.90219 -15.11335 -14.86244 -14.60435 -14.32405 -14.04987 -14.03189 -13.67808 -13.37097 -13.06470 -12.95872 -12.54692 -12.46360 -12.34728 -12.19816 -11.96323 -11.68648 -11.58710 -11.42335 -10.90758 -10.63088 -10.17745 -8.90709 -8.81315 -8.25920 -6.47923 0.32684 0.60777 1.31092 1.34960 1.40669 1.53657 1.84362 1.89134 2.14192 2.59882 2.82595 3.22957 3.96430 4.02427 4.34677 4.38664 4.42441 4.61940 4.65068 4.73410 4.74467 4.77880 4.92165 4.94199 5.08073 5.12578 5.23306 5.34385 5.43651 5.48017 5.63066 5.80697 5.94965 6.03532 6.14630 6.46134 6.57903 6.73050 7.97890 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.036040 B = 0.005307 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.725451 B = 5274.871109 C = 5935.674247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.067 4.067 3 C -0.092 4.092 4 C -0.123 4.123 5 C -0.033 4.033 6 C -0.387 4.387 7 C 0.024 3.976 8 C -0.421 4.421 9 H 0.101 0.899 10 C 0.018 3.982 11 N -0.805 5.805 12 Si 1.013 2.987 13 H -0.258 1.258 14 H -0.259 1.259 15 H -0.253 1.253 16 S 0.118 5.882 17 C -0.256 4.256 18 C -0.153 4.153 19 C 0.063 3.937 20 O -0.323 6.323 21 C 0.023 3.977 22 H 0.045 0.955 23 H 0.045 0.955 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.126 0.874 28 H 0.103 0.897 29 H 0.311 0.689 30 H 0.125 0.875 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.933 -5.070 4.408 7.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.104 4.104 3 C -0.095 4.095 4 C -0.143 4.143 5 C -0.041 4.041 6 C -0.412 4.412 7 C -0.095 4.095 8 C -0.454 4.454 9 H 0.119 0.881 10 C -0.200 4.200 11 N -0.431 5.431 12 Si 0.831 3.169 13 H -0.183 1.183 14 H -0.183 1.183 15 H -0.177 1.177 16 S 0.378 5.622 17 C -0.371 4.371 18 C -0.177 4.177 19 C 0.016 3.984 20 O -0.238 6.238 21 C -0.072 4.072 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.144 0.856 28 H 0.121 0.879 29 H 0.124 0.876 30 H 0.142 0.858 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.619 -3.869 5.502 7.218 hybrid contribution 0.012 -0.159 -1.271 1.281 sum -2.607 -4.028 4.230 6.397 Atomic orbital electron populations 1.21650 0.94214 1.02248 1.01238 1.20360 0.96658 0.90603 1.02805 1.18865 1.03076 0.97768 0.89765 1.20525 1.03154 0.93145 0.97452 1.18257 0.98871 0.94670 0.92283 1.19696 1.27743 0.96512 0.97236 1.21729 0.95952 0.95956 0.95855 1.19595 1.35704 0.93748 0.96402 0.88148 1.27267 0.91841 1.01984 0.98935 1.68716 1.32880 1.23558 1.17967 0.84683 0.79343 0.75657 0.77207 1.18268 1.18264 1.17656 1.84500 1.69326 1.05491 1.02903 1.23611 1.13571 1.03271 0.96675 1.20391 1.06129 0.94783 0.96355 1.18440 1.02309 0.91333 0.86285 1.85914 1.83056 1.41678 1.13138 1.23182 1.01352 0.97456 0.85234 0.93568 0.93564 0.90389 0.90717 0.90474 0.85599 0.87861 0.87575 0.85756 0.93168 0.93208 0.85629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 9.89 71.98 0.71 -2.86 16 2 C -0.07 -1.99 5.76 29.85 0.17 -1.81 16 3 C -0.09 -3.58 5.09 -20.13 -0.10 -3.68 16 4 C -0.12 -5.34 9.63 22.63 0.22 -5.12 16 5 C -0.03 -1.70 5.86 -21.45 -0.13 -1.82 16 6 C -0.39 -20.87 10.14 22.33 0.23 -20.65 16 7 C 0.02 1.32 6.10 22.37 0.14 1.46 16 8 C -0.42 -21.81 9.26 23.12 0.21 -21.59 16 9 H 0.10 4.94 7.86 -2.91 -0.02 4.91 16 10 C 0.02 0.83 5.49 85.30 0.47 1.30 16 11 N -0.80 -38.53 10.62 21.86 0.23 -38.30 16 12 Si 1.01 34.56 29.57 68.60 2.03 36.59 16 13 H -0.26 -8.53 7.11 99.48 0.71 -7.83 16 14 H -0.26 -8.23 7.11 99.48 0.71 -7.52 16 15 H -0.25 -8.42 7.11 99.48 0.71 -7.72 16 16 S 0.12 6.14 20.16 -56.49 -1.14 5.00 16 17 C -0.26 -12.90 6.47 23.09 0.15 -12.75 16 18 C -0.15 -6.67 9.06 22.57 0.20 -6.47 16 19 C 0.06 2.49 6.67 22.59 0.15 2.64 16 20 O -0.32 -10.76 9.62 -91.23 -0.88 -11.63 16 21 C 0.02 0.56 9.81 113.37 1.11 1.67 16 22 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 24 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.07 2.12 7.69 -2.38 -0.02 2.10 16 26 H 0.08 2.05 8.02 -2.38 -0.02 2.03 16 27 H 0.13 4.88 8.03 -2.91 -0.02 4.86 16 28 H 0.10 5.36 8.06 -2.91 -0.02 5.34 16 29 H 0.31 13.09 8.30 -92.71 -0.77 12.32 16 30 H 0.12 4.83 6.26 -2.91 -0.02 4.81 16 31 H 0.05 1.24 7.64 -2.39 -0.02 1.22 16 32 H 0.05 1.23 7.66 -2.39 -0.02 1.22 16 33 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -60.94 292.57 4.89 -56.05 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: 1.11 Total: 21.98 kcal Atomic # 6 Polarization: -73.22 SS G_CDS: 3.54 Total: -69.69 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.23 Total: -38.30 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -0.88 Total: -11.63 kcal Atomic # 14 Polarization: 34.56 SS G_CDS: 2.03 Total: 36.59 kcal Atomic # 16 Polarization: 6.14 SS G_CDS: -1.14 Total: 5.00 kcal Total: -60.94 4.89 -56.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396302125.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.130 kcal (2) G-P(sol) polarization free energy of solvation -60.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds