Wall clock time and date at job start Mon Mar 30 2020 06:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50702 * 109.47302 * 2 1 4 4 C 1.38547 * 119.89836 * 265.00197 * 3 2 1 5 5 C 1.37654 * 120.25309 * 180.02562 * 4 3 2 6 6 C 1.39902 * 120.48640 * 359.97438 * 5 4 3 7 7 S 1.75798 * 130.16524 * 180.02562 * 6 5 4 8 8 C 1.69984 * 93.22492 * 179.97438 * 7 6 5 9 9 C 1.36474 * 111.93037 * 0.02562 * 8 7 6 10 10 C 1.40819 * 123.30158 * 179.97438 * 9 8 7 11 11 H 1.07994 * 120.00243 * 156.29305 * 10 9 8 12 12 C 1.39683 * 119.99453 * 336.29322 * 10 9 8 13 13 N 1.31090 * 120.00204 * 349.18616 * 12 10 9 14 14 Si 1.86799 * 119.99727 * 169.18505 * 12 10 9 15 15 H 1.48502 * 109.47126 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47409 * 120.00037 * 14 12 10 17 17 H 1.48496 * 109.47149 * 239.99877 * 14 12 10 18 18 C 1.39262 * 119.65179 * 0.02562 * 6 5 4 19 19 C 1.38020 * 119.90614 * 85.01814 * 3 2 1 20 20 O 1.35824 * 119.90197 * 0.02562 * 19 3 2 21 21 C 1.42902 * 116.99846 * 89.99684 * 20 19 3 22 22 H 1.09001 * 109.47274 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47466 * 300.00046 * 1 2 3 24 24 H 1.09003 * 109.47121 * 60.00354 * 1 2 3 25 25 H 1.08996 * 109.47257 * 239.99313 * 2 1 3 26 26 H 1.09003 * 109.47121 * 119.99646 * 2 1 3 27 27 H 1.07997 * 119.87839 * 359.97438 * 4 3 2 28 28 H 1.07990 * 119.75783 * 179.71771 * 5 4 3 29 29 H 1.07998 * 124.03085 * 179.97438 * 8 7 6 30 30 H 0.97002 * 119.99651 * 180.02562 * 13 12 10 31 31 H 1.09001 * 109.47052 * 300.00473 * 21 20 19 32 32 H 1.09005 * 109.46742 * 60.00144 * 21 20 19 33 33 H 1.08999 * 109.47097 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3612 2.0370 -1.1965 5 6 2.8213 3.3344 -1.2050 6 6 2.9617 4.0455 -0.0083 7 16 3.5166 5.6893 0.2754 8 6 3.3169 5.5683 1.9591 9 6 2.8489 4.3412 2.3301 10 6 2.5977 3.9816 3.6682 11 1 1.8971 3.1909 3.8925 12 6 3.2546 4.6478 4.7054 13 7 4.2533 5.4536 4.4380 14 14 2.7098 4.3903 6.4735 15 1 1.5690 3.4401 6.5066 16 1 3.8387 3.8368 7.2638 17 1 2.2882 5.6897 7.0558 18 6 2.6335 3.4340 1.1991 19 6 2.1638 2.1042 1.1919 20 8 1.8404 1.4941 2.3615 21 6 2.8821 0.7802 3.0304 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.2570 1.4973 -2.1261 28 1 3.0796 3.8054 -2.1418 29 1 3.5351 6.3670 2.6526 30 1 4.7097 5.9159 5.1584 31 1 3.2554 -0.0113 2.3805 32 1 3.6947 1.4653 3.2723 33 1 2.4906 0.3417 3.9483 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396302191.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:33 Heat of formation + Delta-G solvation = -16.178748 kcal Electronic energy + Delta-G solvation = -17604.967062 eV Core-core repulsion = 14914.530464 eV Total energy + Delta-G solvation = -2690.436598 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.48063 -36.57607 -35.36404 -33.37472 -31.64210 -28.85031 -28.01832 -26.12855 -25.87146 -23.40175 -21.89695 -20.88324 -19.09674 -17.54735 -16.67891 -15.66611 -15.37139 -15.03489 -14.64872 -14.15740 -13.66175 -13.44330 -13.19443 -12.98134 -12.64034 -12.19759 -11.87243 -11.68323 -11.34974 -11.19503 -10.92785 -10.88212 -10.82916 -10.60114 -10.43715 -10.11208 -9.79346 -9.32099 -9.12419 -9.06115 -8.25424 -7.34825 -6.65884 -6.55975 -4.23438 1.77221 1.89461 2.85825 2.97571 3.11911 3.18140 3.72259 3.81820 4.04016 4.23511 4.67947 5.22006 5.28172 5.35172 5.61588 5.71783 5.75099 5.78412 5.90367 5.99309 6.10245 6.12343 6.30305 6.33871 6.43366 6.56061 6.63596 6.91645 7.05330 7.17438 7.26830 7.34491 7.76157 8.03805 8.32291 8.58254 8.86541 8.96820 10.35037 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.018518 B = 0.009165 C = 0.006451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.717062 B = 3054.392044 C = 4339.173833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.069 4.069 3 C -0.131 4.131 4 C -0.112 4.112 5 C -0.100 4.100 6 C -0.136 4.136 7 S 0.036 5.964 8 C -0.351 4.351 9 C 0.083 3.917 10 C -0.425 4.425 11 H 0.088 0.912 12 C 0.065 3.935 13 N -0.805 5.805 14 Si 0.907 3.093 15 H -0.260 1.260 16 H -0.277 1.277 17 H -0.275 1.275 18 C -0.077 4.077 19 C 0.140 3.860 20 O -0.326 6.326 21 C 0.042 3.958 22 H 0.049 0.951 23 H 0.060 0.940 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.118 0.882 28 H 0.114 0.886 29 H 0.161 0.839 30 H 0.274 0.726 31 H 0.032 0.968 32 H 0.058 0.942 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.312 -7.352 -5.449 9.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 C -0.135 4.135 4 C -0.133 4.133 5 C -0.124 4.124 6 C -0.252 4.252 7 S 0.299 5.701 8 C -0.487 4.487 9 C 0.074 3.926 10 C -0.459 4.459 11 H 0.106 0.894 12 C -0.150 4.150 13 N -0.432 5.432 14 Si 0.732 3.268 15 H -0.184 1.184 16 H -0.202 1.202 17 H -0.200 1.200 18 C -0.088 4.088 19 C 0.095 3.905 20 O -0.242 6.242 21 C -0.053 4.053 22 H 0.068 0.932 23 H 0.080 0.920 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.136 0.864 28 H 0.132 0.868 29 H 0.178 0.822 30 H 0.085 0.915 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.794 -5.959 -6.038 8.671 hybrid contribution -0.279 -1.042 1.843 2.135 sum -2.073 -7.001 -4.195 8.421 Atomic orbital electron populations 1.21711 0.95161 1.00755 1.02345 1.20284 0.95987 0.92705 1.01665 1.19729 1.04580 0.96542 0.92636 1.20459 1.01759 0.94561 0.96511 1.20348 1.02260 0.94293 0.95486 1.22594 1.06711 0.99756 0.96117 1.81872 1.71754 1.09441 1.07019 1.24350 1.27057 1.03202 0.94124 1.17288 0.94741 0.88894 0.91671 1.19201 1.21143 1.16444 0.89069 0.89431 1.25810 0.93640 0.94313 1.01236 1.69891 1.16193 1.23083 1.34078 0.86266 0.79533 0.79102 0.81885 1.18398 1.20246 1.20015 1.20050 1.00282 0.94403 0.94023 1.18254 0.97871 0.89558 0.84858 1.85917 1.35296 1.68523 1.34480 1.22838 0.91876 0.94794 0.95763 0.93223 0.92042 0.93014 0.91974 0.91554 0.86418 0.86798 0.82154 0.91487 0.94974 0.92378 0.89853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.89 37.15 0.37 -1.56 16 2 C -0.07 -1.01 5.77 -27.89 -0.16 -1.17 16 3 C -0.13 -2.38 5.14 -104.59 -0.54 -2.92 16 4 C -0.11 -1.92 9.65 -39.68 -0.38 -2.30 16 5 C -0.10 -1.88 10.06 -39.17 -0.39 -2.28 16 6 C -0.14 -3.07 6.44 -38.58 -0.25 -3.32 16 7 S 0.04 0.81 22.96 -107.50 -2.47 -1.66 16 8 C -0.35 -9.34 9.50 30.10 0.29 -9.05 16 9 C 0.08 2.23 5.68 -106.20 -0.60 1.63 16 10 C -0.43 -11.37 7.94 -38.07 -0.30 -11.67 16 11 H 0.09 2.31 6.18 -52.49 -0.32 1.98 16 12 C 0.06 1.66 5.35 -17.33 -0.09 1.57 16 13 N -0.80 -21.35 10.85 55.54 0.60 -20.75 16 14 Si 0.91 19.31 29.57 -169.99 -5.03 14.28 16 15 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 16 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 17 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 18 C -0.08 -1.88 6.04 -105.10 -0.63 -2.51 16 19 C 0.14 3.03 5.74 -38.60 -0.22 2.81 16 20 O -0.33 -6.84 7.77 -19.19 -0.15 -6.99 16 21 C 0.04 0.74 10.19 101.05 1.03 1.77 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.77 8.05 -51.93 -0.42 0.36 16 26 H 0.07 0.97 6.36 -51.93 -0.33 0.64 16 27 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 28 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 29 H 0.16 4.51 6.34 -52.49 -0.33 4.18 16 30 H 0.27 6.68 8.30 -40.82 -0.34 6.35 16 31 H 0.03 0.50 7.15 -51.93 -0.37 0.12 16 32 H 0.06 1.17 7.66 -51.93 -0.40 0.77 16 33 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 288.59 15.07 4.35 4.35 Total: -1.00 -28.46 288.59 -8.43 -36.89 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -3.85 Total: 2.88 kcal Atomic # 6 Polarization: -27.11 SS G_CDS: -1.89 Total: -29.00 kcal Atomic # 7 Polarization: -21.35 SS G_CDS: 0.60 Total: -20.75 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: -0.15 Total: -6.99 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.28 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -2.47 Total: -1.66 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.46 -8.43 -36.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396302191.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.716 kcal (2) G-P(sol) polarization free energy of solvation -28.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds