Wall clock time and date at job start Mon Mar 30 2020 06:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50702 * 109.47302 * 2 1 4 4 C 1.38547 * 119.89836 * 265.00197 * 3 2 1 5 5 C 1.37654 * 120.25309 * 180.02562 * 4 3 2 6 6 C 1.39902 * 120.48640 * 359.97438 * 5 4 3 7 7 S 1.75798 * 130.16524 * 180.02562 * 6 5 4 8 8 C 1.69984 * 93.22492 * 179.97438 * 7 6 5 9 9 C 1.36474 * 111.93037 * 0.02562 * 8 7 6 10 10 C 1.40819 * 123.30158 * 179.97438 * 9 8 7 11 11 H 1.07994 * 120.00243 * 156.29305 * 10 9 8 12 12 C 1.39683 * 119.99453 * 336.29322 * 10 9 8 13 13 N 1.31090 * 120.00204 * 349.18616 * 12 10 9 14 14 Si 1.86799 * 119.99727 * 169.18505 * 12 10 9 15 15 H 1.48502 * 109.47126 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47409 * 120.00037 * 14 12 10 17 17 H 1.48496 * 109.47149 * 239.99877 * 14 12 10 18 18 C 1.39262 * 119.65179 * 0.02562 * 6 5 4 19 19 C 1.38020 * 119.90614 * 85.01814 * 3 2 1 20 20 O 1.35824 * 119.90197 * 0.02562 * 19 3 2 21 21 C 1.42902 * 116.99846 * 89.99684 * 20 19 3 22 22 H 1.09001 * 109.47274 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47466 * 300.00046 * 1 2 3 24 24 H 1.09003 * 109.47121 * 60.00354 * 1 2 3 25 25 H 1.08996 * 109.47257 * 239.99313 * 2 1 3 26 26 H 1.09003 * 109.47121 * 119.99646 * 2 1 3 27 27 H 1.07997 * 119.87839 * 359.97438 * 4 3 2 28 28 H 1.07990 * 119.75783 * 179.71771 * 5 4 3 29 29 H 1.07998 * 124.03085 * 179.97438 * 8 7 6 30 30 H 0.97002 * 119.99651 * 180.02562 * 13 12 10 31 31 H 1.09001 * 109.47052 * 300.00473 * 21 20 19 32 32 H 1.09005 * 109.46742 * 60.00144 * 21 20 19 33 33 H 1.08999 * 109.47097 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3612 2.0370 -1.1965 5 6 2.8213 3.3344 -1.2050 6 6 2.9617 4.0455 -0.0083 7 16 3.5166 5.6893 0.2754 8 6 3.3169 5.5683 1.9591 9 6 2.8489 4.3412 2.3301 10 6 2.5977 3.9816 3.6682 11 1 1.8971 3.1909 3.8925 12 6 3.2546 4.6478 4.7054 13 7 4.2533 5.4536 4.4380 14 14 2.7098 4.3903 6.4735 15 1 1.5690 3.4401 6.5066 16 1 3.8387 3.8368 7.2638 17 1 2.2882 5.6897 7.0558 18 6 2.6335 3.4340 1.1991 19 6 2.1638 2.1042 1.1919 20 8 1.8404 1.4941 2.3615 21 6 2.8821 0.7802 3.0304 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.2570 1.4973 -2.1261 28 1 3.0796 3.8054 -2.1418 29 1 3.5351 6.3670 2.6526 30 1 4.7097 5.9159 5.1584 31 1 3.2554 -0.0113 2.3805 32 1 3.6947 1.4653 3.2723 33 1 2.4906 0.3417 3.9483 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396302191.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:32 Heat of formation + Delta-G solvation = -31.212491 kcal Electronic energy + Delta-G solvation = -17605.618974 eV Core-core repulsion = 14914.530464 eV Total energy + Delta-G solvation = -2691.088510 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.03497 -38.15959 -37.07067 -34.96404 -33.27048 -30.33405 -29.67011 -27.82204 -27.56274 -24.78136 -23.51970 -22.41795 -20.78670 -19.17260 -18.53752 -17.39574 -16.89114 -16.65771 -16.26755 -15.62937 -15.20489 -14.85010 -14.72487 -14.36928 -14.24076 -13.74081 -13.38459 -13.15909 -13.03076 -12.78884 -12.66425 -12.51995 -12.31644 -11.99783 -11.93327 -11.58732 -11.48448 -11.17983 -10.96091 -10.62585 -9.90714 -9.06858 -8.57683 -8.36033 -6.23858 0.15748 0.32689 1.16240 1.25425 1.34794 1.49747 1.90785 1.97446 2.22660 2.61064 3.08061 3.43348 3.92825 3.99062 4.32990 4.40306 4.44304 4.57257 4.59369 4.63194 4.71420 4.82697 4.95543 5.03535 5.10643 5.19539 5.29675 5.35994 5.44531 5.47754 5.68636 5.76512 5.90751 6.03712 6.58650 6.75882 6.88970 6.99080 8.42817 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.018518 B = 0.009165 C = 0.006451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.717062 B = 3054.392044 C = 4339.173833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.068 4.068 3 C -0.122 4.122 4 C -0.093 4.093 5 C -0.102 4.102 6 C -0.152 4.152 7 S 0.056 5.944 8 C -0.392 4.392 9 C 0.060 3.940 10 C -0.449 4.449 11 H 0.082 0.918 12 C 0.021 3.979 13 N -0.837 5.837 14 Si 0.978 3.022 15 H -0.256 1.256 16 H -0.265 1.265 17 H -0.270 1.270 18 C -0.121 4.121 19 C 0.119 3.881 20 O -0.341 6.341 21 C 0.042 3.958 22 H 0.076 0.924 23 H 0.033 0.967 24 H 0.058 0.942 25 H 0.096 0.904 26 H 0.065 0.935 27 H 0.169 0.831 28 H 0.147 0.853 29 H 0.133 0.867 30 H 0.280 0.720 31 H 0.059 0.941 32 H 0.024 0.976 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.108 -10.091 -7.091 12.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.106 4.106 3 C -0.125 4.125 4 C -0.114 4.114 5 C -0.126 4.126 6 C -0.267 4.267 7 S 0.319 5.681 8 C -0.527 4.527 9 C 0.051 3.949 10 C -0.482 4.482 11 H 0.100 0.900 12 C -0.190 4.190 13 N -0.465 5.465 14 Si 0.800 3.200 15 H -0.179 1.179 16 H -0.190 1.190 17 H -0.195 1.195 18 C -0.131 4.131 19 C 0.073 3.927 20 O -0.257 6.257 21 C -0.052 4.052 22 H 0.095 0.905 23 H 0.053 0.947 24 H 0.077 0.923 25 H 0.115 0.885 26 H 0.084 0.916 27 H 0.187 0.813 28 H 0.165 0.835 29 H 0.151 0.849 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.043 0.957 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.589 -8.707 -7.693 11.904 hybrid contribution -0.055 -0.316 2.237 2.260 sum -2.644 -9.023 -5.456 10.871 Atomic orbital electron populations 1.21678 0.94317 1.02277 1.01359 1.20415 0.96560 0.90226 1.03358 1.20244 1.02448 0.98224 0.91627 1.21067 0.98592 0.93750 0.97967 1.20809 1.01580 0.94962 0.95209 1.22915 1.07181 0.99441 0.97167 1.81376 1.72561 1.10399 1.03786 1.24214 1.29156 1.02915 0.96448 1.17749 0.94449 0.89702 0.92985 1.19375 1.21782 1.17049 0.89967 0.89970 1.26708 0.93251 0.93615 1.05460 1.69998 1.17087 1.23806 1.35601 0.85198 0.79356 0.79127 0.76341 1.17950 1.18970 1.19545 1.20241 1.03041 0.95986 0.93868 1.18560 0.98695 0.89070 0.86336 1.85876 1.36229 1.68755 1.34887 1.22947 0.90637 0.94363 0.97233 0.90494 0.94738 0.92320 0.88516 0.91631 0.81331 0.83545 0.84938 0.90962 0.92290 0.95747 0.87497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 9.89 71.98 0.71 -2.53 16 2 C -0.07 -1.70 5.77 29.85 0.17 -1.53 16 3 C -0.12 -4.06 5.14 -19.84 -0.10 -4.16 16 4 C -0.09 -2.76 9.65 22.21 0.21 -2.55 16 5 C -0.10 -3.54 10.06 22.53 0.23 -3.31 16 6 C -0.15 -6.83 6.44 22.92 0.15 -6.68 16 7 S 0.06 2.63 22.96 -56.49 -1.30 1.33 16 8 C -0.39 -22.18 9.50 67.41 0.64 -21.54 16 9 C 0.06 3.43 5.68 -20.88 -0.12 3.32 16 10 C -0.45 -25.23 7.94 23.25 0.18 -25.04 16 11 H 0.08 4.55 6.18 -2.91 -0.02 4.53 16 12 C 0.02 1.15 5.35 85.15 0.46 1.60 16 13 N -0.84 -46.71 10.85 21.79 0.24 -46.47 16 14 Si 0.98 40.70 29.57 68.60 2.03 42.73 16 15 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 16 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 17 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 18 C -0.12 -6.09 6.04 -20.17 -0.12 -6.21 16 19 C 0.12 5.10 5.74 22.90 0.13 5.23 16 20 O -0.34 -14.35 7.77 -91.57 -0.71 -15.06 16 21 C 0.04 1.49 10.19 113.37 1.16 2.64 16 22 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.10 1.79 8.05 -2.39 -0.02 1.77 16 26 H 0.07 1.66 6.36 -2.39 -0.02 1.65 16 27 H 0.17 3.35 8.06 -2.91 -0.02 3.33 16 28 H 0.15 4.07 8.06 -2.92 -0.02 4.05 16 29 H 0.13 8.08 6.34 -2.91 -0.02 8.06 16 30 H 0.28 14.26 8.30 -92.71 -0.77 13.49 16 31 H 0.06 1.73 7.15 -2.39 -0.02 1.71 16 32 H 0.02 1.01 7.66 -2.38 -0.02 0.99 16 33 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -66.63 288.59 5.08 -61.55 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 1.12 Total: 16.69 kcal Atomic # 6 Polarization: -64.46 SS G_CDS: 3.70 Total: -60.76 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: 0.24 Total: -46.47 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.71 Total: -15.06 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -1.30 Total: 1.33 kcal Total: -66.63 5.08 -61.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396302191.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.339 kcal (2) G-P(sol) polarization free energy of solvation -66.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds