Wall clock time and date at job start Mon Mar 30 2020 06:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50696 * 109.47308 * 2 1 4 4 C 1.39645 * 119.85719 * 90.00356 * 3 2 1 5 5 S 1.75983 * 130.26900 * 0.02562 * 4 3 2 6 6 C 1.75460 * 91.78612 * 180.02562 * 5 4 3 7 7 C 1.39926 * 124.82635 * 180.02562 * 6 5 4 8 8 H 1.08004 * 119.99861 * 173.26471 * 7 6 5 9 9 C 1.40183 * 120.00021 * 353.25961 * 7 6 5 10 10 N 1.30757 * 119.99787 * 6.55896 * 9 7 6 11 11 Si 1.86798 * 119.99881 * 186.56384 * 9 7 6 12 12 H 1.48497 * 109.47248 * 94.98553 * 11 9 7 13 13 H 1.48507 * 109.46813 * 214.98479 * 11 9 7 14 14 H 1.48499 * 109.47449 * 334.98397 * 11 9 7 15 15 C 1.36942 * 110.34641 * 359.97438 * 6 5 4 16 16 C 1.39798 * 115.02526 * 0.02562 * 15 6 5 17 17 C 1.41936 * 128.53483 * 179.71840 * 16 15 6 18 18 C 1.35915 * 120.46983 * 179.77281 * 17 16 15 19 19 C 1.37659 * 119.86400 * 270.02570 * 3 2 1 20 20 C 1.50710 * 119.87863 * 0.02562 * 19 3 2 21 21 O 1.42894 * 109.47173 * 179.97438 * 20 19 3 22 22 H 1.08999 * 109.47189 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46991 * 299.99529 * 1 2 3 24 24 H 1.08996 * 109.47289 * 59.99463 * 1 2 3 25 25 H 1.09003 * 109.46991 * 240.00471 * 2 1 3 26 26 H 1.09001 * 109.47717 * 120.00695 * 2 1 3 27 27 H 0.97008 * 119.99639 * 179.97438 * 10 9 7 28 28 H 1.07996 * 122.48867 * 180.02562 * 15 6 5 29 29 H 1.08000 * 119.76211 * 0.27345 * 17 16 15 30 30 H 1.08003 * 119.66978 * 180.25517 * 18 17 16 31 31 H 1.09000 * 109.46488 * 299.99916 * 20 19 3 32 32 H 1.08995 * 109.47074 * 59.99392 * 20 19 3 33 33 H 0.96694 * 114.00052 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2642 2.0762 1.2111 5 16 2.0654 1.5119 2.8661 6 6 2.6078 3.0498 3.5137 7 6 2.7145 3.3501 4.8762 8 1 3.1597 4.2826 5.1904 9 6 2.2434 2.4407 5.8334 10 7 1.8227 1.2598 5.4618 11 14 2.2167 2.9161 7.6397 12 1 0.8733 3.4406 7.9937 13 1 2.5165 1.7220 8.4702 14 1 3.2390 3.9634 7.8912 15 6 2.9131 3.9139 2.4962 16 6 2.7313 3.3995 1.2090 17 6 2.9517 4.0398 -0.0384 18 6 2.7236 3.3773 -1.2030 19 6 2.2603 2.0672 -1.1938 20 6 2.0061 1.3516 -2.4956 21 8 2.3131 2.2228 -3.5859 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 1.4970 0.6303 6.1242 28 1 3.2678 4.9181 2.6747 29 1 3.3109 5.0581 -0.0622 30 1 2.8996 3.8757 -2.1449 31 1 2.6358 0.4637 -2.5510 32 1 0.9579 1.0576 -2.5499 33 1 2.1728 1.8272 -4.4569 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396302373.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:52 Heat of formation + Delta-G solvation = -48.849318 kcal Electronic energy + Delta-G solvation = -16971.361660 eV Core-core repulsion = 14279.508360 eV Total energy + Delta-G solvation = -2691.853301 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.76095 -36.44022 -35.11384 -33.84778 -32.50461 -29.51731 -28.60036 -26.72015 -23.97093 -23.27718 -21.49905 -20.32541 -18.64930 -17.86939 -16.94664 -15.81816 -15.32433 -14.74203 -14.50276 -14.10888 -13.87207 -13.32362 -13.12381 -12.59629 -12.51394 -12.38950 -11.86312 -11.67132 -11.47412 -11.30428 -11.12919 -11.05200 -10.61417 -10.48568 -10.34678 -10.01547 -9.86051 -9.69049 -9.18372 -8.97568 -8.21920 -7.26315 -7.17248 -6.31121 -4.65702 2.04470 2.52307 2.80551 2.85342 2.91310 3.30713 3.55544 3.59238 3.88323 4.61050 4.62401 5.09449 5.38908 5.47746 5.64563 5.74691 5.76174 5.93441 6.09566 6.12835 6.19819 6.35581 6.50256 6.64681 6.68200 6.83430 6.94515 7.18270 7.28636 7.40213 7.55602 7.60044 7.81542 7.91939 7.95165 8.13995 8.36298 8.44363 9.66323 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.035815 B = 0.005795 C = 0.005079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.618084 B = 4830.425777 C = 5511.988342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.086 4.086 3 C -0.011 4.011 4 C -0.261 4.261 5 S 0.137 5.863 6 C 0.055 3.945 7 C -0.387 4.387 8 H 0.098 0.902 9 C 0.054 3.946 10 N -0.777 5.777 11 Si 0.937 3.063 12 H -0.264 1.264 13 H -0.271 1.271 14 H -0.256 1.256 15 C -0.365 4.365 16 C 0.022 3.978 17 C -0.161 4.161 18 C -0.081 4.081 19 C -0.174 4.174 20 C 0.137 3.863 21 O -0.570 6.570 22 H 0.050 0.950 23 H 0.060 0.940 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.300 0.700 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.043 0.957 32 H 0.044 0.956 33 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.882 -3.585 -5.606 6.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 C -0.015 4.015 4 C -0.375 4.375 5 S 0.397 5.603 6 C -0.064 4.064 7 C -0.421 4.421 8 H 0.116 0.884 9 C -0.167 4.167 10 N -0.403 5.403 11 Si 0.760 3.240 12 H -0.189 1.189 13 H -0.196 1.196 14 H -0.180 1.180 15 C -0.390 4.390 16 C 0.014 3.986 17 C -0.181 4.181 18 C -0.101 4.101 19 C -0.176 4.176 20 C 0.060 3.940 21 O -0.374 6.374 22 H 0.069 0.931 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.113 0.887 28 H 0.123 0.877 29 H 0.118 0.882 30 H 0.129 0.871 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -2.291 -4.711 -4.340 6.802 hybrid contribution 0.341 1.218 -0.313 1.303 sum -1.949 -3.493 -4.653 6.136 Atomic orbital electron populations 1.21673 0.95186 1.00790 1.02300 1.20524 0.95995 0.93985 1.01858 1.18604 0.98178 0.94166 0.90557 1.23408 1.14230 0.99561 1.00300 1.84669 1.71094 1.14882 0.89608 1.21461 0.94280 0.94343 0.96352 1.19328 1.30159 1.03566 0.89004 0.88394 1.26305 0.92841 0.93839 1.03744 1.68696 1.28358 1.05355 1.37885 0.85765 0.80102 0.79515 0.78583 1.18864 1.19587 1.17996 1.19625 1.27964 1.01497 0.89910 1.18054 0.95005 0.92215 0.93356 1.20538 1.06906 0.99133 0.91499 1.20024 0.99068 0.94033 0.96960 1.18782 1.11207 0.96075 0.91582 1.20709 0.97570 0.90841 0.84868 1.86501 1.90964 1.43440 1.16486 0.93069 0.92056 0.93083 0.92019 0.91243 0.88690 0.87714 0.88200 0.87134 0.93904 0.93800 0.78386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.89 37.16 0.37 -1.86 16 2 C -0.09 -1.51 5.50 -27.89 -0.15 -1.66 16 3 C -0.01 -0.23 5.16 -104.31 -0.54 -0.76 16 4 C -0.26 -6.35 6.30 -38.27 -0.24 -6.59 16 5 S 0.14 3.39 19.44 -107.50 -2.09 1.30 16 6 C 0.05 1.45 6.11 -39.42 -0.24 1.21 16 7 C -0.39 -9.69 9.26 -38.22 -0.35 -10.04 16 8 H 0.10 2.33 7.86 -52.48 -0.41 1.91 16 9 C 0.05 1.24 5.49 -17.28 -0.09 1.14 16 10 N -0.78 -18.20 10.62 55.56 0.59 -17.60 16 11 Si 0.94 17.03 29.57 -169.99 -5.03 12.00 16 12 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 13 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 14 H -0.26 -4.61 7.11 56.52 0.40 -4.21 16 15 C -0.36 -9.55 10.14 -39.47 -0.40 -9.95 16 16 C 0.02 0.55 5.86 -107.11 -0.63 -0.08 16 17 C -0.16 -3.68 10.04 -39.00 -0.39 -4.08 16 18 C -0.08 -1.72 9.28 -40.14 -0.37 -2.09 16 19 C -0.17 -3.53 5.88 -104.56 -0.62 -4.15 16 20 C 0.14 2.16 6.13 36.01 0.22 2.38 16 21 O -0.57 -8.38 12.12 -35.23 -0.43 -8.81 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.05 0.76 7.35 -51.93 -0.38 0.38 16 25 H 0.06 0.93 6.60 -51.93 -0.34 0.59 16 26 H 0.07 1.26 7.58 -51.93 -0.39 0.87 16 27 H 0.30 6.26 8.29 -40.82 -0.34 5.92 16 28 H 0.10 2.63 8.06 -52.49 -0.42 2.21 16 29 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 30 H 0.11 2.19 6.99 -52.48 -0.37 1.82 16 31 H 0.04 0.61 7.46 -51.93 -0.39 0.23 16 32 H 0.04 0.63 7.34 -51.93 -0.38 0.25 16 33 H 0.37 3.32 9.12 45.56 0.42 3.73 16 LS Contribution 289.10 15.07 4.36 4.36 Total: -1.00 -28.63 289.10 -9.11 -37.74 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -3.08 Total: 7.54 kcal Atomic # 6 Polarization: -33.08 SS G_CDS: -3.44 Total: -36.52 kcal Atomic # 7 Polarization: -18.20 SS G_CDS: 0.59 Total: -17.60 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: -0.43 Total: -8.81 kcal Atomic # 14 Polarization: 17.03 SS G_CDS: -5.03 Total: 12.00 kcal Atomic # 16 Polarization: 3.39 SS G_CDS: -2.09 Total: 1.30 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.63 -9.11 -37.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396302373.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.112 kcal (2) G-P(sol) polarization free energy of solvation -28.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds