Wall clock time and date at job start Mon Mar 30 2020 06:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50696 * 109.47308 * 2 1 4 4 C 1.39645 * 119.85719 * 90.00356 * 3 2 1 5 5 S 1.75983 * 130.26900 * 0.02562 * 4 3 2 6 6 C 1.75460 * 91.78612 * 180.02562 * 5 4 3 7 7 C 1.39926 * 124.82635 * 180.02562 * 6 5 4 8 8 H 1.08004 * 119.99861 * 173.26471 * 7 6 5 9 9 C 1.40183 * 120.00021 * 353.25961 * 7 6 5 10 10 N 1.30757 * 119.99787 * 6.55896 * 9 7 6 11 11 Si 1.86798 * 119.99881 * 186.56384 * 9 7 6 12 12 H 1.48497 * 109.47248 * 94.98553 * 11 9 7 13 13 H 1.48507 * 109.46813 * 214.98479 * 11 9 7 14 14 H 1.48499 * 109.47449 * 334.98397 * 11 9 7 15 15 C 1.36942 * 110.34641 * 359.97438 * 6 5 4 16 16 C 1.39798 * 115.02526 * 0.02562 * 15 6 5 17 17 C 1.41936 * 128.53483 * 179.71840 * 16 15 6 18 18 C 1.35915 * 120.46983 * 179.77281 * 17 16 15 19 19 C 1.37659 * 119.86400 * 270.02570 * 3 2 1 20 20 C 1.50710 * 119.87863 * 0.02562 * 19 3 2 21 21 O 1.42894 * 109.47173 * 179.97438 * 20 19 3 22 22 H 1.08999 * 109.47189 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46991 * 299.99529 * 1 2 3 24 24 H 1.08996 * 109.47289 * 59.99463 * 1 2 3 25 25 H 1.09003 * 109.46991 * 240.00471 * 2 1 3 26 26 H 1.09001 * 109.47717 * 120.00695 * 2 1 3 27 27 H 0.97008 * 119.99639 * 179.97438 * 10 9 7 28 28 H 1.07996 * 122.48867 * 180.02562 * 15 6 5 29 29 H 1.08000 * 119.76211 * 0.27345 * 17 16 15 30 30 H 1.08003 * 119.66978 * 180.25517 * 18 17 16 31 31 H 1.09000 * 109.46488 * 299.99916 * 20 19 3 32 32 H 1.08995 * 109.47074 * 59.99392 * 20 19 3 33 33 H 0.96694 * 114.00052 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2642 2.0762 1.2111 5 16 2.0654 1.5119 2.8661 6 6 2.6078 3.0498 3.5137 7 6 2.7145 3.3501 4.8762 8 1 3.1597 4.2826 5.1904 9 6 2.2434 2.4407 5.8334 10 7 1.8227 1.2598 5.4618 11 14 2.2167 2.9161 7.6397 12 1 0.8733 3.4406 7.9937 13 1 2.5165 1.7220 8.4702 14 1 3.2390 3.9634 7.8912 15 6 2.9131 3.9139 2.4962 16 6 2.7313 3.3995 1.2090 17 6 2.9517 4.0398 -0.0384 18 6 2.7236 3.3773 -1.2030 19 6 2.2603 2.0672 -1.1938 20 6 2.0061 1.3516 -2.4956 21 8 2.3131 2.2228 -3.5859 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 1.4970 0.6303 6.1242 28 1 3.2678 4.9181 2.6747 29 1 3.3109 5.0581 -0.0622 30 1 2.8996 3.8757 -2.1449 31 1 2.6358 0.4637 -2.5510 32 1 0.9579 1.0576 -2.5499 33 1 2.1728 1.8272 -4.4569 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396302373.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:52 Heat of formation + Delta-G solvation = -65.635284 kcal Electronic energy + Delta-G solvation = -16972.089554 eV Core-core repulsion = 14279.508360 eV Total energy + Delta-G solvation = -2692.581195 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.40311 -37.80153 -36.75763 -35.47476 -34.14675 -31.21053 -30.17413 -28.35730 -25.61144 -24.78357 -23.13327 -22.01991 -20.41434 -19.62551 -18.21994 -17.52915 -16.93834 -16.28801 -15.82620 -15.66421 -15.42661 -14.84374 -14.61989 -14.22802 -14.19544 -13.89117 -13.45392 -13.27172 -13.14043 -12.87718 -12.67038 -12.50125 -12.04834 -11.98773 -11.89921 -11.70287 -11.33015 -11.21798 -10.85728 -10.76106 -9.99231 -9.06687 -8.92442 -8.17695 -6.55595 0.29436 0.75182 1.29887 1.34357 1.44804 1.52770 1.83369 1.91574 2.13745 2.82790 3.25125 3.53645 3.98435 4.10878 4.28649 4.36464 4.49975 4.55953 4.65577 4.71802 4.82574 4.87511 4.90220 5.03401 5.14730 5.24643 5.36152 5.47867 5.49363 5.56144 5.81775 5.91549 5.95812 6.09944 6.34564 6.51098 6.56750 7.06328 7.95002 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.035815 B = 0.005795 C = 0.005079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.618084 B = 4830.425777 C = 5511.988342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.084 4.084 3 C -0.021 4.021 4 C -0.280 4.280 5 S 0.133 5.867 6 C 0.023 3.977 7 C -0.418 4.418 8 H 0.098 0.902 9 C 0.019 3.981 10 N -0.798 5.798 11 Si 1.013 2.987 12 H -0.257 1.257 13 H -0.256 1.256 14 H -0.255 1.255 15 C -0.399 4.399 16 C -0.010 4.010 17 C -0.178 4.178 18 C -0.082 4.082 19 C -0.170 4.170 20 C 0.142 3.858 21 O -0.586 6.586 22 H 0.081 0.919 23 H 0.033 0.967 24 H 0.062 0.938 25 H 0.095 0.905 26 H 0.056 0.944 27 H 0.313 0.687 28 H 0.096 0.904 29 H 0.108 0.892 30 H 0.129 0.871 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.616 -5.159 -6.700 8.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.121 4.121 3 C -0.025 4.025 4 C -0.395 4.395 5 S 0.392 5.608 6 C -0.096 4.096 7 C -0.451 4.451 8 H 0.116 0.884 9 C -0.200 4.200 10 N -0.424 5.424 11 Si 0.831 3.169 12 H -0.182 1.182 13 H -0.180 1.180 14 H -0.178 1.178 15 C -0.424 4.424 16 C -0.018 4.018 17 C -0.198 4.198 18 C -0.102 4.102 19 C -0.173 4.173 20 C 0.064 3.936 21 O -0.395 6.395 22 H 0.100 0.900 23 H 0.052 0.948 24 H 0.081 0.919 25 H 0.113 0.887 26 H 0.075 0.925 27 H 0.126 0.874 28 H 0.114 0.886 29 H 0.126 0.874 30 H 0.147 0.853 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -3.026 -6.299 -5.488 8.886 hybrid contribution 0.569 1.677 -0.165 1.778 sum -2.457 -4.623 -5.653 7.705 Atomic orbital electron populations 1.21644 0.93707 1.02596 1.01506 1.20596 0.97163 0.91502 1.02864 1.19085 0.97574 0.96114 0.89729 1.23706 1.14991 0.99629 1.01165 1.84318 1.71612 1.14387 0.90445 1.21827 0.95186 0.95303 0.97261 1.19649 1.31546 1.04569 0.89356 0.88385 1.27277 0.91479 0.93243 1.08007 1.68712 1.27668 1.06122 1.39871 0.84688 0.80219 0.79599 0.72418 1.18179 1.17966 1.17834 1.19739 1.30152 1.01540 0.90965 1.18320 0.96354 0.93311 0.93796 1.20752 1.07693 0.99894 0.91465 1.20331 0.98237 0.94765 0.96865 1.19417 1.08397 0.95720 0.93732 1.20673 0.99365 0.90635 0.82887 1.86420 1.91105 1.44053 1.17897 0.89967 0.94808 0.91911 0.88681 0.92492 0.87382 0.88560 0.87393 0.85329 0.91588 0.91527 0.75179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.96 9.89 71.98 0.71 -3.25 16 2 C -0.08 -2.74 5.50 29.85 0.16 -2.57 16 3 C -0.02 -0.86 5.16 -19.66 -0.10 -0.96 16 4 C -0.28 -14.04 6.30 23.12 0.15 -13.89 16 5 S 0.13 6.81 19.44 -56.49 -1.10 5.71 16 6 C 0.02 1.30 6.11 22.37 0.14 1.44 16 7 C -0.42 -21.87 9.26 23.15 0.21 -21.65 16 8 H 0.10 4.91 7.86 -2.91 -0.02 4.89 16 9 C 0.02 0.88 5.49 85.33 0.47 1.35 16 10 N -0.80 -37.77 10.62 21.87 0.23 -37.54 16 11 Si 1.01 34.48 29.57 68.60 2.03 36.51 16 12 H -0.26 -8.48 7.11 99.48 0.71 -7.77 16 13 H -0.26 -8.04 7.11 99.48 0.71 -7.33 16 14 H -0.25 -8.54 7.11 99.48 0.71 -7.83 16 15 C -0.40 -22.32 10.14 22.34 0.23 -22.09 16 16 C -0.01 -0.54 5.86 -21.48 -0.13 -0.67 16 17 C -0.18 -8.35 10.04 22.65 0.23 -8.13 16 18 C -0.08 -3.41 9.28 21.90 0.20 -3.20 16 19 C -0.17 -6.54 5.88 -19.82 -0.12 -6.65 16 20 C 0.14 3.83 6.13 71.24 0.44 4.27 16 21 O -0.59 -14.76 12.12 -148.98 -1.81 -16.57 16 22 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 23 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.06 1.65 7.35 -2.39 -0.02 1.63 16 25 H 0.09 2.46 6.60 -2.39 -0.02 2.44 16 26 H 0.06 2.00 7.58 -2.39 -0.02 1.98 16 27 H 0.31 12.93 8.29 -92.70 -0.77 12.16 16 28 H 0.10 5.27 8.06 -2.91 -0.02 5.24 16 29 H 0.11 4.69 8.06 -2.91 -0.02 4.66 16 30 H 0.13 4.83 6.99 -2.91 -0.02 4.81 16 31 H 0.07 1.54 7.46 -2.39 -0.02 1.52 16 32 H 0.07 1.56 7.34 -2.39 -0.02 1.54 16 33 H 0.40 5.24 9.12 -74.06 -0.68 4.57 16 Total: -1.00 -64.84 289.10 2.41 -62.43 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: 0.46 Total: 25.47 kcal Atomic # 6 Polarization: -78.60 SS G_CDS: 2.59 Total: -76.01 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.23 Total: -37.54 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -1.81 Total: -16.57 kcal Atomic # 14 Polarization: 34.48 SS G_CDS: 2.03 Total: 36.51 kcal Atomic # 16 Polarization: 6.81 SS G_CDS: -1.10 Total: 5.71 kcal Total: -64.84 2.41 -62.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396302373.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.208 kcal (2) G-P(sol) polarization free energy of solvation -64.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds