Wall clock time and date at job start Mon Mar 30 2020 06:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50705 * 109.46721 * 2 1 4 4 C 1.37659 * 119.66044 * 264.99602 * 3 2 1 5 5 C 1.40484 * 119.95188 * 179.97438 * 4 3 2 6 6 C 1.40804 * 120.03855 * 179.97438 * 5 4 3 7 7 H 1.08005 * 119.99331 * 205.12031 * 6 5 4 8 8 C 1.39801 * 120.00290 * 25.12250 * 6 5 4 9 9 N 1.30966 * 119.99623 * 17.98754 * 8 6 5 10 10 Si 1.86796 * 119.99858 * 197.99366 * 8 6 5 11 11 H 1.48498 * 109.47169 * 94.68509 * 10 8 6 12 12 H 1.48501 * 109.46790 * 214.68075 * 10 8 6 13 13 H 1.48493 * 109.47352 * 334.67723 * 10 8 6 14 14 C 1.42311 * 119.92013 * 0.02562 * 5 4 3 15 15 S 1.75913 * 130.47854 * 180.02562 * 14 5 4 16 16 C 1.75318 * 92.15359 * 179.97438 * 15 14 5 17 17 C 1.31930 * 111.27015 * 359.97438 * 16 15 14 18 18 C 1.39150 * 119.73705 * 359.97438 * 14 5 4 19 19 C 1.38527 * 119.66558 * 84.72342 * 3 2 1 20 20 O 1.35584 * 119.61759 * 359.97438 * 19 3 2 21 21 C 1.42900 * 117.00317 * 89.99877 * 20 19 3 22 22 H 1.09005 * 109.46882 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47401 * 300.00116 * 1 2 3 24 24 H 1.09007 * 109.46864 * 60.00379 * 1 2 3 25 25 H 1.08997 * 109.46944 * 119.99662 * 2 1 3 26 26 H 1.08993 * 109.47401 * 239.99884 * 2 1 3 27 27 H 1.08002 * 120.02608 * 359.95795 * 4 3 2 28 28 H 0.97011 * 119.99854 * 180.02562 * 9 8 6 29 29 H 1.07998 * 124.36294 * 179.97438 * 16 15 14 30 30 H 1.08000 * 122.55607 * 180.02562 * 17 16 15 31 31 H 1.08998 * 109.46911 * 59.99595 * 21 20 19 32 32 H 1.08999 * 109.47288 * 179.97438 * 21 20 19 33 33 H 1.09007 * 109.46988 * 300.00203 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3577 2.0284 -1.1917 5 6 2.8260 3.3529 -1.1988 6 6 3.1599 3.9759 -2.4166 7 1 3.8709 4.7888 -2.4301 8 6 2.5711 3.5422 -3.6081 9 7 1.4766 2.8239 -3.5741 10 14 3.3456 3.9874 -5.2486 11 1 4.2340 2.8833 -5.6924 12 1 2.2779 4.1999 -6.2586 13 1 4.1404 5.2327 -5.0991 14 6 2.9635 4.0638 0.0263 15 16 3.5135 5.7053 0.3385 16 6 3.2885 5.5224 2.0676 17 6 2.8359 4.3198 2.3668 18 6 2.6322 3.4418 1.2262 19 6 2.1565 2.1042 1.1986 20 8 1.8241 1.4872 2.3592 21 6 2.8602 0.7689 3.0320 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 2.2534 1.4871 -2.1204 28 1 1.0682 2.5227 -4.4009 29 1 3.4938 6.2947 2.7941 30 1 2.6324 4.0113 3.3815 31 1 3.6706 1.4523 3.2853 32 1 2.4613 0.3249 3.9441 33 1 3.2391 -0.0182 2.3799 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396302815.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:35 Heat of formation + Delta-G solvation = -16.934370 kcal Electronic energy + Delta-G solvation = -17472.094895 eV Core-core repulsion = 14781.625530 eV Total energy + Delta-G solvation = -2690.469365 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.93607 -36.45671 -35.04101 -33.84232 -31.76780 -28.98990 -27.68787 -26.61873 -24.71076 -23.15908 -21.89574 -20.66764 -18.89049 -17.47575 -17.01474 -15.94995 -15.08791 -14.81651 -14.55144 -14.01330 -13.58998 -13.23441 -13.22165 -12.72230 -12.41254 -12.33606 -11.83574 -11.64018 -11.40308 -11.24087 -11.04334 -10.90334 -10.67766 -10.37122 -10.34827 -10.09086 -9.78069 -9.55611 -9.20143 -8.83223 -8.13755 -7.29596 -6.99969 -6.67459 -4.46996 1.86521 2.49424 2.66722 2.95526 2.99486 3.02814 3.19446 3.42018 3.79745 4.29316 4.87199 5.34900 5.47190 5.75976 5.77626 5.86850 5.92499 6.04624 6.09486 6.16138 6.29927 6.46204 6.51698 6.62785 6.72061 6.84641 6.89063 6.97136 7.13772 7.21564 7.35303 7.60436 7.81664 7.98147 8.28804 8.51934 8.60473 8.83727 9.95979 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.016762 B = 0.009286 C = 0.006304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.077467 B = 3014.460189 C = 4440.909659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.070 4.070 3 C -0.058 4.058 4 C -0.161 4.161 5 C 0.146 3.854 6 C -0.447 4.447 7 H 0.083 0.917 8 C 0.077 3.923 9 N -0.776 5.776 10 Si 0.911 3.089 11 H -0.266 1.266 12 H -0.275 1.275 13 H -0.259 1.259 14 C -0.202 4.202 15 S 0.042 5.958 16 C -0.217 4.217 17 C -0.115 4.115 18 C -0.057 4.057 19 C -0.019 4.019 20 O -0.325 6.325 21 C 0.029 3.971 22 H 0.042 0.958 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.129 0.871 28 H 0.285 0.715 29 H 0.149 0.851 30 H 0.125 0.875 31 H 0.032 0.968 32 H 0.073 0.927 33 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.744 -1.856 4.462 5.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.107 4.107 3 C -0.060 4.060 4 C -0.184 4.184 5 C 0.140 3.860 6 C -0.475 4.475 7 H 0.101 0.899 8 C -0.144 4.144 9 N -0.399 5.399 10 Si 0.735 3.265 11 H -0.190 1.190 12 H -0.200 1.200 13 H -0.183 1.183 14 C -0.317 4.317 15 S 0.304 5.696 16 C -0.351 4.351 17 C -0.147 4.147 18 C -0.064 4.064 19 C -0.066 4.066 20 O -0.242 6.242 21 C -0.066 4.066 22 H 0.061 0.939 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.146 0.854 28 H 0.096 0.904 29 H 0.167 0.833 30 H 0.143 0.857 31 H 0.051 0.949 32 H 0.092 0.908 33 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.895 -0.714 3.528 4.068 hybrid contribution 0.025 -0.915 0.173 0.932 sum 1.921 -1.629 3.701 4.477 Atomic orbital electron populations 1.21651 0.95408 1.00024 1.02423 1.20299 0.95901 0.93855 1.00685 1.19563 0.98741 0.94862 0.92798 1.20897 1.07245 0.94261 0.96029 1.17004 0.88879 0.90666 0.89427 1.19519 1.21560 1.15575 0.90835 0.89926 1.25941 0.93423 0.93303 1.01694 1.69887 1.13283 1.26075 1.30667 0.86228 0.79838 0.80277 0.80165 1.19046 1.19980 1.18276 1.22440 1.15790 0.96313 0.97133 1.83530 1.72003 1.14556 0.99490 1.24869 1.09511 1.00979 0.99750 1.20835 1.02108 0.93229 0.98530 1.19104 1.01299 0.94691 0.91336 1.17683 1.14875 0.89987 0.84069 1.86010 1.34281 1.67892 1.36028 1.22893 0.92072 0.95441 0.96181 0.93915 0.92535 0.92476 0.92509 0.92335 0.85378 0.90389 0.83325 0.85679 0.94883 0.90810 0.94737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.90 37.16 0.37 -2.10 16 2 C -0.07 -1.34 5.74 -27.88 -0.16 -1.50 16 3 C -0.06 -1.33 5.12 -104.72 -0.54 -1.87 16 4 C -0.16 -4.03 8.26 -38.95 -0.32 -4.36 16 5 C 0.15 3.80 5.59 -106.52 -0.60 3.20 16 6 C -0.45 -11.39 8.80 -38.03 -0.33 -11.72 16 7 H 0.08 2.07 7.74 -52.48 -0.41 1.66 16 8 C 0.08 1.83 5.11 -17.34 -0.09 1.74 16 9 N -0.78 -18.95 10.98 55.54 0.61 -18.34 16 10 Si 0.91 17.87 29.60 -169.99 -5.03 12.84 16 11 H -0.27 -5.13 7.11 56.52 0.40 -4.72 16 12 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 13 H -0.26 -5.08 7.11 56.52 0.40 -4.67 16 14 C -0.20 -4.99 6.36 -37.68 -0.24 -5.23 16 15 S 0.04 0.89 22.82 -107.50 -2.45 -1.56 16 16 C -0.22 -4.09 11.03 28.82 0.32 -3.78 16 17 C -0.11 -2.34 10.26 -38.65 -0.40 -2.73 16 18 C -0.06 -1.34 6.04 -105.28 -0.64 -1.98 16 19 C -0.02 -0.44 5.77 -38.04 -0.22 -0.66 16 20 O -0.33 -6.75 9.53 -18.45 -0.18 -6.93 16 21 C 0.03 0.48 10.76 101.05 1.09 1.57 16 22 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.06 1.02 6.30 -51.93 -0.33 0.69 16 26 H 0.06 1.07 8.04 -51.93 -0.42 0.65 16 27 H 0.13 3.25 6.16 -52.49 -0.32 2.93 16 28 H 0.29 6.29 8.30 -40.82 -0.34 5.95 16 29 H 0.15 2.25 8.06 -52.49 -0.42 1.82 16 30 H 0.13 2.27 8.06 -52.49 -0.42 1.85 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.03 0.55 7.12 -51.93 -0.37 0.18 16 LS Contribution 293.49 15.07 4.42 4.42 Total: -1.00 -27.01 293.49 -8.32 -35.33 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -3.94 Total: 3.65 kcal Atomic # 6 Polarization: -27.66 SS G_CDS: -1.76 Total: -29.42 kcal Atomic # 7 Polarization: -18.95 SS G_CDS: 0.61 Total: -18.34 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -0.18 Total: -6.93 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.84 kcal Atomic # 16 Polarization: 0.89 SS G_CDS: -2.45 Total: -1.56 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.01 -8.32 -35.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396302815.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.399 kcal (2) G-P(sol) polarization free energy of solvation -27.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds