Wall clock time and date at job start Mon Mar 30 2020 06:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50705 * 109.46721 * 2 1 4 4 C 1.37659 * 119.66044 * 264.99602 * 3 2 1 5 5 C 1.40484 * 119.95188 * 179.97438 * 4 3 2 6 6 C 1.40804 * 120.03855 * 179.97438 * 5 4 3 7 7 H 1.08005 * 119.99331 * 205.12031 * 6 5 4 8 8 C 1.39801 * 120.00290 * 25.12250 * 6 5 4 9 9 N 1.30966 * 119.99623 * 17.98754 * 8 6 5 10 10 Si 1.86796 * 119.99858 * 197.99366 * 8 6 5 11 11 H 1.48498 * 109.47169 * 94.68509 * 10 8 6 12 12 H 1.48501 * 109.46790 * 214.68075 * 10 8 6 13 13 H 1.48493 * 109.47352 * 334.67723 * 10 8 6 14 14 C 1.42311 * 119.92013 * 0.02562 * 5 4 3 15 15 S 1.75913 * 130.47854 * 180.02562 * 14 5 4 16 16 C 1.75318 * 92.15359 * 179.97438 * 15 14 5 17 17 C 1.31930 * 111.27015 * 359.97438 * 16 15 14 18 18 C 1.39150 * 119.73705 * 359.97438 * 14 5 4 19 19 C 1.38527 * 119.66558 * 84.72342 * 3 2 1 20 20 O 1.35584 * 119.61759 * 359.97438 * 19 3 2 21 21 C 1.42900 * 117.00317 * 89.99877 * 20 19 3 22 22 H 1.09005 * 109.46882 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47401 * 300.00116 * 1 2 3 24 24 H 1.09007 * 109.46864 * 60.00379 * 1 2 3 25 25 H 1.08997 * 109.46944 * 119.99662 * 2 1 3 26 26 H 1.08993 * 109.47401 * 239.99884 * 2 1 3 27 27 H 1.08002 * 120.02608 * 359.95795 * 4 3 2 28 28 H 0.97011 * 119.99854 * 180.02562 * 9 8 6 29 29 H 1.07998 * 124.36294 * 179.97438 * 16 15 14 30 30 H 1.08000 * 122.55607 * 180.02562 * 17 16 15 31 31 H 1.08998 * 109.46911 * 59.99595 * 21 20 19 32 32 H 1.08999 * 109.47288 * 179.97438 * 21 20 19 33 33 H 1.09007 * 109.46988 * 300.00203 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3577 2.0284 -1.1917 5 6 2.8260 3.3529 -1.1988 6 6 3.1599 3.9759 -2.4166 7 1 3.8709 4.7888 -2.4301 8 6 2.5711 3.5422 -3.6081 9 7 1.4766 2.8239 -3.5741 10 14 3.3456 3.9874 -5.2486 11 1 4.2340 2.8833 -5.6924 12 1 2.2779 4.1999 -6.2586 13 1 4.1404 5.2327 -5.0991 14 6 2.9635 4.0638 0.0263 15 16 3.5135 5.7053 0.3385 16 6 3.2885 5.5224 2.0676 17 6 2.8359 4.3198 2.3668 18 6 2.6322 3.4418 1.2262 19 6 2.1565 2.1042 1.1986 20 8 1.8241 1.4872 2.3592 21 6 2.8602 0.7689 3.0320 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 2.2534 1.4871 -2.1204 28 1 1.0682 2.5227 -4.4009 29 1 3.4938 6.2947 2.7941 30 1 2.6324 4.0113 3.3815 31 1 3.6706 1.4523 3.2853 32 1 2.4613 0.3249 3.9441 33 1 3.2391 -0.0182 2.3799 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396302815.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:34 Heat of formation + Delta-G solvation = -30.099959 kcal Electronic energy + Delta-G solvation = -17472.665798 eV Core-core repulsion = 14781.625530 eV Total energy + Delta-G solvation = -2691.040267 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.63062 -38.11770 -36.71312 -35.53982 -33.43738 -30.69384 -29.36669 -28.14042 -26.41010 -24.79806 -23.51281 -22.40573 -20.54881 -19.21836 -18.72842 -17.62445 -16.77458 -16.41614 -16.14406 -15.60964 -15.10090 -14.89442 -14.74316 -14.34839 -14.07587 -13.90664 -13.47407 -13.23318 -12.94601 -12.81250 -12.75861 -12.52090 -12.21323 -11.98409 -11.90671 -11.69727 -11.48444 -11.23317 -10.93300 -10.46110 -9.87288 -9.06143 -8.77620 -8.41355 -6.34115 0.19330 0.71673 1.03413 1.35172 1.38903 1.48688 1.50461 1.74550 2.16231 2.55230 3.21905 3.57080 3.93188 4.21330 4.30835 4.52558 4.54818 4.62540 4.65623 4.75870 4.79101 4.86106 4.95954 5.02880 5.12086 5.15654 5.25889 5.34283 5.47412 5.48760 5.63092 5.81699 6.01762 6.14393 6.44205 6.71868 6.76117 7.12418 8.21604 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.016762 B = 0.009286 C = 0.006304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.077467 B = 3014.460189 C = 4440.909659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.068 4.068 3 C -0.068 4.068 4 C -0.184 4.184 5 C 0.116 3.884 6 C -0.479 4.479 7 H 0.075 0.925 8 C 0.040 3.960 9 N -0.806 5.806 10 Si 0.980 3.020 11 H -0.259 1.259 12 H -0.264 1.264 13 H -0.260 1.260 14 C -0.238 4.238 15 S 0.039 5.961 16 C -0.192 4.192 17 C -0.130 4.130 18 C -0.077 4.077 19 C -0.019 4.019 20 O -0.335 6.335 21 C 0.026 3.974 22 H 0.077 0.923 23 H 0.046 0.954 24 H 0.036 0.964 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.115 0.885 28 H 0.293 0.707 29 H 0.195 0.805 30 H 0.151 0.849 31 H 0.034 0.966 32 H 0.110 0.890 33 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.982 -2.039 5.803 6.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.105 4.105 3 C -0.069 4.069 4 C -0.207 4.207 5 C 0.111 3.889 6 C -0.508 4.508 7 H 0.093 0.907 8 C -0.177 4.177 9 N -0.430 5.430 10 Si 0.801 3.199 11 H -0.183 1.183 12 H -0.189 1.189 13 H -0.183 1.183 14 C -0.353 4.353 15 S 0.300 5.700 16 C -0.325 4.325 17 C -0.161 4.161 18 C -0.085 4.085 19 C -0.066 4.066 20 O -0.252 6.252 21 C -0.068 4.068 22 H 0.096 0.904 23 H 0.066 0.934 24 H 0.055 0.945 25 H 0.092 0.908 26 H 0.081 0.919 27 H 0.133 0.867 28 H 0.104 0.896 29 H 0.212 0.788 30 H 0.169 0.831 31 H 0.052 0.948 32 H 0.129 0.871 33 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.128 -0.910 4.891 5.411 hybrid contribution -0.061 -0.882 -0.045 0.885 sum 2.067 -1.792 4.846 5.565 Atomic orbital electron populations 1.21573 0.94345 1.01824 1.00935 1.20350 0.96702 0.91760 1.01682 1.19924 0.98126 0.96667 0.92229 1.20871 1.09006 0.94429 0.96378 1.17359 0.89683 0.91433 0.90424 1.19658 1.22685 1.16483 0.91950 0.90653 1.26729 0.93434 0.92934 1.04648 1.69926 1.14204 1.26919 1.31972 0.85204 0.79044 0.79916 0.75766 1.18317 1.18859 1.18344 1.22786 1.16869 0.98283 0.97354 1.83427 1.71943 1.12716 1.01896 1.25326 1.07052 1.01432 0.98736 1.21007 1.03145 0.93268 0.98698 1.19617 1.01089 0.95457 0.92287 1.17852 1.13511 0.90242 0.84956 1.85932 1.35998 1.68170 1.35136 1.23115 0.91476 0.95137 0.97117 0.90444 0.93442 0.94451 0.90829 0.91879 0.86742 0.89608 0.78808 0.83125 0.94773 0.87143 0.94382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 9.90 71.98 0.71 -3.81 16 2 C -0.07 -2.56 5.74 29.85 0.17 -2.39 16 3 C -0.07 -3.16 5.12 -19.93 -0.10 -3.26 16 4 C -0.18 -9.60 8.26 22.68 0.19 -9.42 16 5 C 0.12 6.33 5.59 -21.09 -0.12 6.21 16 6 C -0.48 -25.55 8.80 23.28 0.20 -25.34 16 7 H 0.08 3.95 7.74 -2.91 -0.02 3.93 16 8 C 0.04 1.97 5.11 85.20 0.44 2.40 16 9 N -0.81 -40.79 10.98 21.81 0.24 -40.55 16 10 Si 0.98 37.30 29.60 68.60 2.03 39.33 16 11 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 12 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 13 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 14 C -0.24 -12.06 6.36 23.50 0.15 -11.91 16 15 S 0.04 1.63 22.82 -56.49 -1.29 0.34 16 16 C -0.19 -6.73 11.03 66.96 0.74 -5.99 16 17 C -0.13 -5.03 10.26 23.25 0.24 -4.79 16 18 C -0.08 -3.61 6.04 -20.29 -0.12 -3.74 16 19 C -0.02 -0.86 5.77 23.27 0.13 -0.72 16 20 O -0.34 -13.33 9.53 -88.93 -0.85 -14.18 16 21 C 0.03 0.79 10.76 113.37 1.22 2.01 16 22 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 23 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 25 H 0.07 2.50 6.30 -2.39 -0.02 2.49 16 26 H 0.06 2.29 8.04 -2.39 -0.02 2.27 16 27 H 0.11 6.14 6.16 -2.91 -0.02 6.12 16 28 H 0.29 13.28 8.30 -92.70 -0.77 12.51 16 29 H 0.19 4.96 8.06 -2.91 -0.02 4.93 16 30 H 0.15 4.99 8.06 -2.91 -0.02 4.96 16 31 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.04 1.12 7.12 -2.38 -0.02 1.10 16 Total: -1.00 -60.47 293.49 5.10 -55.37 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 1.12 Total: 20.44 kcal Atomic # 6 Polarization: -64.60 SS G_CDS: 3.85 Total: -60.75 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 0.24 Total: -40.55 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.85 Total: -14.18 kcal Atomic # 14 Polarization: 37.30 SS G_CDS: 2.03 Total: 39.33 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -1.29 Total: 0.34 kcal Total: -60.47 5.10 -55.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396302815.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.275 kcal (2) G-P(sol) polarization free energy of solvation -60.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds