Wall clock time and date at job start Mon Mar 30 2020 06:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.46932 * 2 1 4 4 C 1.35908 * 119.65165 * 269.97492 * 3 2 1 5 5 C 1.42025 * 120.57990 * 180.02562 * 4 3 2 6 6 C 1.39810 * 128.49780 * 180.02562 * 5 4 3 7 7 C 1.36943 * 115.02282 * 180.02562 * 6 5 4 8 8 C 1.39960 * 124.83909 * 180.02562 * 7 6 5 9 9 H 1.08001 * 119.99968 * 359.97438 * 8 7 6 10 10 C 1.40167 * 119.99997 * 180.02562 * 8 7 6 11 11 N 1.30768 * 120.00029 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99884 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47072 * 89.99909 * 12 10 8 14 14 H 1.48500 * 109.47180 * 209.99964 * 12 10 8 15 15 H 1.48502 * 109.47026 * 329.99875 * 12 10 8 16 16 S 1.75456 * 110.32269 * 359.97438 * 7 6 5 17 17 C 1.40203 * 118.60675 * 359.79928 * 5 4 3 18 18 C 1.40037 * 119.75443 * 0.46858 * 17 5 4 19 19 O 1.35975 * 119.90220 * 179.74983 * 18 17 5 20 20 C 1.42903 * 116.99935 * 179.72540 * 19 18 17 21 21 C 1.38117 * 120.19290 * 359.48204 * 18 17 5 22 22 H 1.08993 * 109.47070 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47223 * 300.00119 * 1 2 3 24 24 H 1.08997 * 109.47022 * 59.99609 * 1 2 3 25 25 H 1.08990 * 109.46825 * 239.99757 * 2 1 3 26 26 H 1.08993 * 109.46903 * 119.99662 * 2 1 3 27 27 H 1.08001 * 119.70781 * 0.02919 * 4 3 2 28 28 H 1.08003 * 122.48323 * 359.97438 * 6 5 4 29 29 H 0.96994 * 119.99899 * 180.02562 * 11 10 8 30 30 H 1.09002 * 109.47382 * 300.00318 * 20 19 18 31 31 H 1.09001 * 109.46938 * 180.02562 * 20 19 18 32 32 H 1.09004 * 109.46926 * 60.00425 * 20 19 18 33 33 H 1.08004 * 119.91500 * 180.27822 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2569 2.0546 -1.1811 5 6 2.7307 3.3932 -1.2041 6 6 3.0149 4.1969 -2.3123 7 6 3.4616 5.4568 -2.0148 8 6 3.8047 6.4280 -2.9624 9 1 3.7254 6.2059 -4.0163 10 6 4.2522 7.6886 -2.5436 11 7 4.3487 7.9574 -1.2675 12 14 4.7108 8.9845 -3.8084 13 1 3.5128 9.7960 -4.1423 14 1 5.7673 9.8674 -3.2518 15 1 5.2169 8.3204 -5.0364 16 16 3.5410 5.6805 -0.2764 17 6 2.9570 4.0463 0.0157 18 6 2.7236 3.3703 1.2197 19 8 2.9469 3.9991 2.4045 20 6 2.6826 3.2535 3.5946 21 6 2.2619 2.0686 1.2073 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.0734 1.5356 -2.1103 28 1 2.8922 3.8495 -3.3275 29 1 4.6580 8.8298 -0.9777 30 1 1.6336 2.9582 3.6129 31 1 2.9013 3.8706 4.4660 32 1 3.3111 2.3631 3.6125 33 1 2.0791 1.5531 2.1385 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396302817.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:41 Heat of formation + Delta-G solvation = -34.676393 kcal Electronic energy + Delta-G solvation = -16856.430447 eV Core-core repulsion = 14165.191730 eV Total energy + Delta-G solvation = -2691.238716 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.21035 -37.16745 -35.18313 -33.96666 -31.57096 -28.88165 -28.69118 -26.82062 -25.22174 -23.44576 -21.48585 -20.81803 -18.70068 -18.06121 -16.60989 -15.96084 -15.23135 -15.10945 -14.98760 -13.97059 -13.78762 -13.72148 -13.20683 -12.77045 -12.45946 -12.19205 -11.95532 -11.73045 -11.56412 -11.44248 -11.15076 -10.85734 -10.81293 -10.64165 -10.54211 -10.27674 -10.00187 -9.82589 -9.18362 -8.95227 -7.89372 -7.35880 -7.14895 -6.15225 -4.69082 2.11712 2.46316 2.83298 2.86245 2.92552 3.35142 3.58917 3.60805 3.93915 4.02590 4.62375 5.08126 5.31498 5.39583 5.48825 5.53352 5.72876 5.75597 5.95254 6.01111 6.08616 6.12643 6.29482 6.48839 6.50674 6.68420 6.82218 7.02161 7.19436 7.22657 7.43399 7.57503 7.78577 7.82299 7.98269 8.30958 8.35599 8.43757 9.67761 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.028546 B = 0.005915 C = 0.004988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.628352 B = 4732.655046 C = 5611.760120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.077 4.077 3 C -0.042 4.042 4 C -0.178 4.178 5 C 0.048 3.952 6 C -0.364 4.364 7 C 0.052 3.948 8 C -0.381 4.381 9 H 0.099 0.901 10 C 0.052 3.948 11 N -0.774 5.774 12 Si 0.939 3.061 13 H -0.263 1.263 14 H -0.271 1.271 15 H -0.256 1.256 16 S 0.160 5.840 17 C -0.297 4.297 18 C 0.189 3.811 19 O -0.320 6.320 20 C 0.034 3.966 21 C -0.285 4.285 22 H 0.048 0.952 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.101 0.899 28 H 0.107 0.893 29 H 0.301 0.699 30 H 0.048 0.952 31 H 0.089 0.911 32 H 0.048 0.952 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.184 -4.839 3.725 6.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 C -0.044 4.044 4 C -0.198 4.198 5 C 0.040 3.960 6 C -0.389 4.389 7 C -0.068 4.068 8 C -0.416 4.416 9 H 0.117 0.883 10 C -0.170 4.170 11 N -0.400 5.400 12 Si 0.761 3.239 13 H -0.188 1.188 14 H -0.196 1.196 15 H -0.180 1.180 16 S 0.420 5.580 17 C -0.412 4.412 18 C 0.141 3.859 19 O -0.234 6.234 20 C -0.062 4.062 21 C -0.306 4.306 22 H 0.067 0.933 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.119 0.881 28 H 0.125 0.875 29 H 0.115 0.885 30 H 0.066 0.934 31 H 0.107 0.893 32 H 0.067 0.933 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.624 -3.277 4.832 6.060 hybrid contribution -0.331 -0.920 -1.244 1.582 sum -1.955 -4.197 3.588 5.857 Atomic orbital electron populations 1.21717 0.95523 1.00558 1.02202 1.20437 0.95592 0.93888 1.01543 1.18699 0.98460 0.94605 0.92671 1.20270 1.08736 0.94553 0.96265 1.17792 0.94137 0.92787 0.91332 1.19589 1.27081 0.95603 0.96583 1.21565 0.94036 0.95217 0.95994 1.19346 1.32493 0.94581 0.95146 0.88339 1.26333 0.93507 1.00388 0.96744 1.68662 1.31422 1.24107 1.15784 0.85758 0.79209 0.78786 0.80105 1.18791 1.19573 1.18005 1.84899 1.68416 1.03762 1.00880 1.22841 1.20003 1.05169 0.93187 1.18121 0.94411 0.90364 0.83033 1.86080 1.83022 1.41662 1.12639 1.22862 1.00266 0.96914 0.86146 1.20253 1.17713 0.95161 0.97451 0.93288 0.92864 0.92580 0.91820 0.92111 0.88136 0.87495 0.88539 0.93353 0.89287 0.93333 0.87424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.89 37.16 0.37 -1.57 16 2 C -0.08 -1.18 6.04 -27.88 -0.17 -1.35 16 3 C -0.04 -0.83 5.08 -105.21 -0.53 -1.37 16 4 C -0.18 -3.95 9.64 -38.97 -0.38 -4.33 16 5 C 0.05 1.22 5.85 -107.12 -0.63 0.60 16 6 C -0.36 -9.50 10.14 -39.46 -0.40 -9.90 16 7 C 0.05 1.38 6.11 -39.41 -0.24 1.14 16 8 C -0.38 -9.57 9.27 -38.21 -0.35 -9.92 16 9 H 0.10 2.32 7.85 -52.49 -0.41 1.90 16 10 C 0.05 1.20 5.50 -17.28 -0.10 1.11 16 11 N -0.77 -18.47 10.59 55.56 0.59 -17.88 16 12 Si 0.94 17.06 29.56 -169.99 -5.03 12.03 16 13 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 14 H -0.27 -4.79 7.11 56.52 0.40 -4.39 16 15 H -0.26 -4.60 7.11 56.52 0.40 -4.20 16 16 S 0.16 4.16 20.10 -107.50 -2.16 2.00 16 17 C -0.30 -7.61 6.42 -38.17 -0.25 -7.85 16 18 C 0.19 4.34 6.71 -38.95 -0.26 4.08 16 19 O -0.32 -6.72 10.47 -19.66 -0.21 -6.93 16 20 C 0.03 0.50 9.81 101.05 0.99 1.49 16 21 C -0.28 -5.79 8.68 -39.37 -0.34 -6.13 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.06 0.91 8.07 -51.93 -0.42 0.50 16 26 H 0.06 0.84 8.08 -51.93 -0.42 0.42 16 27 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 28 H 0.11 2.64 8.06 -52.48 -0.42 2.22 16 29 H 0.30 6.41 8.29 -40.82 -0.34 6.07 16 30 H 0.05 0.66 7.65 -51.93 -0.40 0.26 16 31 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.05 0.66 7.65 -51.93 -0.40 0.26 16 33 H 0.11 1.87 6.25 -52.48 -0.33 1.54 16 LS Contribution 293.73 15.07 4.43 4.43 Total: -1.00 -28.30 293.73 -8.71 -37.01 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -4.04 Total: 3.35 kcal Atomic # 6 Polarization: -31.72 SS G_CDS: -2.29 Total: -34.01 kcal Atomic # 7 Polarization: -18.47 SS G_CDS: 0.59 Total: -17.88 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: -0.21 Total: -6.93 kcal Atomic # 14 Polarization: 17.06 SS G_CDS: -5.03 Total: 12.03 kcal Atomic # 16 Polarization: 4.16 SS G_CDS: -2.16 Total: 2.00 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.30 -8.71 -37.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396302817.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.331 kcal (2) G-P(sol) polarization free energy of solvation -28.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds