Wall clock time and date at job start Mon Mar 30 2020 06:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.46932 * 2 1 4 4 C 1.35908 * 119.65165 * 269.97492 * 3 2 1 5 5 C 1.42025 * 120.57990 * 180.02562 * 4 3 2 6 6 C 1.39810 * 128.49780 * 180.02562 * 5 4 3 7 7 C 1.36943 * 115.02282 * 180.02562 * 6 5 4 8 8 C 1.39960 * 124.83909 * 180.02562 * 7 6 5 9 9 H 1.08001 * 119.99968 * 359.97438 * 8 7 6 10 10 C 1.40167 * 119.99997 * 180.02562 * 8 7 6 11 11 N 1.30768 * 120.00029 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99884 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47072 * 89.99909 * 12 10 8 14 14 H 1.48500 * 109.47180 * 209.99964 * 12 10 8 15 15 H 1.48502 * 109.47026 * 329.99875 * 12 10 8 16 16 S 1.75456 * 110.32269 * 359.97438 * 7 6 5 17 17 C 1.40203 * 118.60675 * 359.79928 * 5 4 3 18 18 C 1.40037 * 119.75443 * 0.46858 * 17 5 4 19 19 O 1.35975 * 119.90220 * 179.74983 * 18 17 5 20 20 C 1.42903 * 116.99935 * 179.72540 * 19 18 17 21 21 C 1.38117 * 120.19290 * 359.48204 * 18 17 5 22 22 H 1.08993 * 109.47070 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47223 * 300.00119 * 1 2 3 24 24 H 1.08997 * 109.47022 * 59.99609 * 1 2 3 25 25 H 1.08990 * 109.46825 * 239.99757 * 2 1 3 26 26 H 1.08993 * 109.46903 * 119.99662 * 2 1 3 27 27 H 1.08001 * 119.70781 * 0.02919 * 4 3 2 28 28 H 1.08003 * 122.48323 * 359.97438 * 6 5 4 29 29 H 0.96994 * 119.99899 * 180.02562 * 11 10 8 30 30 H 1.09002 * 109.47382 * 300.00318 * 20 19 18 31 31 H 1.09001 * 109.46938 * 180.02562 * 20 19 18 32 32 H 1.09004 * 109.46926 * 60.00425 * 20 19 18 33 33 H 1.08004 * 119.91500 * 180.27822 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2569 2.0546 -1.1811 5 6 2.7307 3.3932 -1.2041 6 6 3.0149 4.1969 -2.3123 7 6 3.4616 5.4568 -2.0148 8 6 3.8047 6.4280 -2.9624 9 1 3.7254 6.2059 -4.0163 10 6 4.2522 7.6886 -2.5436 11 7 4.3487 7.9574 -1.2675 12 14 4.7108 8.9845 -3.8084 13 1 3.5128 9.7960 -4.1423 14 1 5.7673 9.8674 -3.2518 15 1 5.2169 8.3204 -5.0364 16 16 3.5410 5.6805 -0.2764 17 6 2.9570 4.0463 0.0157 18 6 2.7236 3.3703 1.2197 19 8 2.9469 3.9991 2.4045 20 6 2.6826 3.2535 3.5946 21 6 2.2619 2.0686 1.2073 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.0734 1.5356 -2.1103 28 1 2.8922 3.8495 -3.3275 29 1 4.6580 8.8298 -0.9777 30 1 1.6336 2.9582 3.6129 31 1 2.9013 3.8706 4.4660 32 1 3.3111 2.3631 3.6125 33 1 2.0791 1.5531 2.1385 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396302817.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:40 Heat of formation + Delta-G solvation = -49.343638 kcal Electronic energy + Delta-G solvation = -16857.066466 eV Core-core repulsion = 14165.191730 eV Total energy + Delta-G solvation = -2691.874736 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.84456 -38.79410 -36.91035 -35.63569 -33.14058 -30.61968 -30.21429 -28.25364 -26.92427 -24.89362 -23.21417 -22.39156 -20.40817 -19.90889 -18.26390 -17.64842 -16.93232 -16.55831 -16.52172 -15.65439 -15.18744 -15.11959 -14.72384 -14.29628 -14.01243 -13.78068 -13.51591 -13.29031 -13.12902 -12.97197 -12.56005 -12.31704 -12.30136 -12.19095 -11.99358 -11.69751 -11.58494 -11.49874 -10.89436 -10.86315 -9.70742 -9.18781 -8.91332 -8.03670 -6.60338 0.32794 0.73616 1.32873 1.35180 1.44995 1.54391 1.85440 1.95184 2.14975 2.55774 2.83741 3.24882 3.96849 4.18288 4.36463 4.37503 4.42249 4.53679 4.59847 4.71412 4.73720 4.78909 4.89275 4.96641 5.07642 5.17172 5.31698 5.40037 5.45579 5.46670 5.57674 5.87086 5.96622 6.03162 6.17710 6.49311 6.53734 6.70515 7.95058 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.028546 B = 0.005915 C = 0.004988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.628352 B = 4732.655046 C = 5611.760120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.075 4.075 3 C -0.032 4.032 4 C -0.199 4.199 5 C 0.026 3.974 6 C -0.396 4.396 7 C 0.026 3.974 8 C -0.410 4.410 9 H 0.105 0.895 10 C 0.015 3.985 11 N -0.798 5.798 12 Si 1.016 2.984 13 H -0.255 1.255 14 H -0.258 1.258 15 H -0.252 1.252 16 S 0.127 5.873 17 C -0.329 4.329 18 C 0.177 3.823 19 O -0.344 6.344 20 C 0.022 3.978 21 C -0.275 4.275 22 H 0.079 0.921 23 H 0.051 0.949 24 H 0.042 0.958 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.113 0.887 28 H 0.106 0.894 29 H 0.313 0.687 30 H 0.063 0.937 31 H 0.117 0.883 32 H 0.063 0.937 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.588 -5.948 4.579 7.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.112 4.112 3 C -0.034 4.034 4 C -0.219 4.219 5 C 0.018 3.982 6 C -0.421 4.421 7 C -0.093 4.093 8 C -0.443 4.443 9 H 0.123 0.877 10 C -0.204 4.204 11 N -0.424 5.424 12 Si 0.834 3.166 13 H -0.180 1.180 14 H -0.182 1.182 15 H -0.175 1.175 16 S 0.386 5.614 17 C -0.444 4.444 18 C 0.128 3.872 19 O -0.259 6.259 20 C -0.072 4.072 21 C -0.296 4.296 22 H 0.098 0.902 23 H 0.070 0.930 24 H 0.061 0.939 25 H 0.093 0.907 26 H 0.103 0.897 27 H 0.131 0.869 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.081 0.919 31 H 0.135 0.865 32 H 0.082 0.918 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.040 -4.419 5.716 7.507 hybrid contribution -0.248 -0.695 -1.335 1.525 sum -2.288 -5.114 4.381 7.112 Atomic orbital electron populations 1.21694 0.94026 1.02434 1.01538 1.20540 0.96710 0.90675 1.03319 1.19276 0.95898 0.96745 0.91526 1.20513 1.09646 0.93640 0.98077 1.18108 0.94703 0.94269 0.91114 1.19741 1.29106 0.96226 0.96981 1.21897 0.94940 0.96029 0.96453 1.19726 1.33572 0.95721 0.95313 0.87743 1.27382 0.92371 1.01779 0.98873 1.68720 1.30877 1.25201 1.17600 0.84652 0.79261 0.75582 0.77129 1.17960 1.18228 1.17527 1.84636 1.69845 1.05584 1.01300 1.23084 1.21662 1.04903 0.94747 1.18329 0.94437 0.91193 0.83207 1.86046 1.83023 1.43303 1.13498 1.23277 1.01558 0.97848 0.84506 1.20723 1.15538 0.94116 0.99226 0.90172 0.93001 0.93854 0.90726 0.89735 0.86935 0.87632 0.87374 0.91882 0.86478 0.91831 0.83746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 9.89 71.98 0.71 -2.60 16 2 C -0.08 -2.03 6.04 29.85 0.18 -1.85 16 3 C -0.03 -1.22 5.08 -20.24 -0.10 -1.32 16 4 C -0.20 -8.86 9.64 22.67 0.22 -8.64 16 5 C 0.03 1.38 5.85 -21.48 -0.13 1.26 16 6 C -0.40 -21.91 10.14 22.35 0.23 -21.69 16 7 C 0.03 1.49 6.11 22.38 0.14 1.63 16 8 C -0.41 -21.41 9.27 23.16 0.21 -21.20 16 9 H 0.10 5.12 7.85 -2.91 -0.02 5.09 16 10 C 0.02 0.71 5.50 85.32 0.47 1.17 16 11 N -0.80 -38.99 10.59 21.87 0.23 -38.76 16 12 Si 1.02 34.57 29.56 68.60 2.03 36.59 16 13 H -0.26 -8.34 7.11 99.48 0.71 -7.64 16 14 H -0.26 -8.21 7.11 99.48 0.71 -7.50 16 15 H -0.25 -8.32 7.11 99.48 0.71 -7.62 16 16 S 0.13 6.95 20.10 -56.49 -1.14 5.82 16 17 C -0.33 -17.47 6.42 23.18 0.15 -17.32 16 18 C 0.18 8.11 6.71 22.68 0.15 8.26 16 19 O -0.34 -14.26 10.47 -93.26 -0.98 -15.23 16 20 C 0.02 0.60 9.81 113.37 1.11 1.71 16 21 C -0.28 -10.59 8.68 22.40 0.19 -10.40 16 22 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.07 1.88 8.07 -2.39 -0.02 1.86 16 26 H 0.08 1.92 8.08 -2.39 -0.02 1.90 16 27 H 0.11 4.59 8.06 -2.91 -0.02 4.56 16 28 H 0.11 5.59 8.06 -2.91 -0.02 5.57 16 29 H 0.31 13.41 8.29 -92.71 -0.77 12.64 16 30 H 0.06 1.51 7.65 -2.39 -0.02 1.49 16 31 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.06 1.52 7.65 -2.38 -0.02 1.50 16 33 H 0.14 4.41 6.25 -2.91 -0.02 4.39 16 Total: -1.00 -64.89 293.73 4.80 -60.09 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: 1.11 Total: 22.46 kcal Atomic # 6 Polarization: -74.51 SS G_CDS: 3.54 Total: -70.97 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.23 Total: -38.76 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.98 Total: -15.23 kcal Atomic # 14 Polarization: 34.57 SS G_CDS: 2.03 Total: 36.59 kcal Atomic # 16 Polarization: 6.95 SS G_CDS: -1.14 Total: 5.82 kcal Total: -64.89 4.80 -60.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396302817.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.751 kcal (2) G-P(sol) polarization free energy of solvation -64.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds