Wall clock time and date at job start Mon Mar 30 2020 06:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.47294 * 2 1 4 4 C 1.38646 * 119.87809 * 270.02189 * 3 2 1 5 5 C 1.37643 * 120.11608 * 179.55118 * 4 3 2 6 6 C 1.39802 * 120.47950 * 0.70313 * 5 4 3 7 7 S 1.75873 * 129.71743 * 179.19427 * 6 5 4 8 8 C 1.75177 * 92.75792 * 180.02562 * 7 6 5 9 9 O 1.35247 * 124.56830 * 180.02562 * 8 7 6 10 10 C 1.42896 * 117.00433 * 358.54907 * 9 8 7 11 11 C 1.37450 * 110.85858 * 359.97438 * 8 7 6 12 12 C 1.40672 * 123.23668 * 179.97438 * 11 8 7 13 13 H 1.08003 * 120.00137 * 144.83276 * 12 11 8 14 14 C 1.39562 * 120.00117 * 324.82931 * 12 11 8 15 15 N 1.31253 * 120.00071 * 157.06331 * 14 12 11 16 16 Si 1.86803 * 119.99884 * 336.78337 * 14 12 11 17 17 H 1.48495 * 109.47025 * 116.26786 * 16 14 12 18 18 H 1.48499 * 109.47161 * 236.26482 * 16 14 12 19 19 H 1.48498 * 109.47345 * 356.26624 * 16 14 12 20 20 C 1.39286 * 119.65294 * 359.49497 * 6 5 4 21 21 C 1.37349 * 119.87625 * 89.99935 * 3 2 1 22 22 H 1.09002 * 109.46909 * 60.00123 * 1 2 3 23 23 H 1.09000 * 109.47174 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47065 * 300.00253 * 1 2 3 25 25 H 1.09001 * 109.47387 * 239.99702 * 2 1 3 26 26 H 1.09002 * 109.46909 * 119.99877 * 2 1 3 27 27 H 1.08006 * 119.94162 * 359.97438 * 4 3 2 28 28 H 1.08006 * 119.75677 * 179.97438 * 5 4 3 29 29 H 1.09003 * 109.47011 * 60.00511 * 10 9 8 30 30 H 1.08998 * 109.47449 * 179.97438 * 10 9 8 31 31 H 1.08994 * 109.46926 * 300.00213 * 10 9 8 32 32 H 0.97002 * 119.99730 * 179.72658 * 15 14 12 33 33 H 1.07997 * 119.78469 * 359.97438 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2622 2.0721 -1.2022 5 6 2.7123 3.3729 -1.2079 6 6 2.9557 4.0443 -0.0061 7 16 3.5440 5.6788 0.2689 8 6 3.4829 5.4985 2.0103 9 8 3.8304 6.4614 2.8941 10 6 4.3068 7.6959 2.3547 11 6 3.0330 4.2469 2.3573 12 6 2.8839 3.8233 3.6904 13 1 2.0738 3.1617 3.9594 14 6 3.7830 4.2579 4.6653 15 7 3.4298 4.2602 5.9294 16 14 5.4918 4.8289 4.1720 17 1 5.6495 6.2667 4.5081 18 1 6.5101 4.0347 4.9052 19 1 5.6744 4.6393 2.7105 20 6 2.7305 3.3936 1.2047 21 6 2.2605 2.0659 1.1910 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.0813 1.5602 -2.1358 28 1 2.8898 3.8746 -2.1478 29 1 3.5345 8.1400 1.7266 30 1 4.5493 8.3788 3.1690 31 1 5.1993 7.5109 1.7571 32 1 4.0561 4.5585 6.6074 33 1 2.0782 1.5517 2.1230 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396302831.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:05 Heat of formation + Delta-G solvation = -7.196602 kcal Electronic energy + Delta-G solvation = -17283.990955 eV Core-core repulsion = 14593.943852 eV Total energy + Delta-G solvation = -2690.047103 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.95545 -37.73168 -34.94177 -33.36153 -31.98545 -29.40491 -28.42904 -26.57552 -25.26081 -23.49220 -21.86708 -20.98675 -19.11976 -17.58583 -17.24637 -15.86956 -15.29642 -15.11823 -14.70170 -14.33682 -13.68066 -13.51911 -13.35508 -13.00980 -12.87326 -12.70242 -12.10830 -11.98209 -11.52870 -11.38682 -11.18678 -10.95678 -10.86509 -10.69243 -10.29030 -10.09745 -9.78794 -9.50034 -9.27559 -9.00288 -8.55831 -7.20785 -6.81182 -6.73199 -4.23314 1.67768 1.86142 2.45220 2.98846 3.08471 3.33684 3.51065 3.54838 4.23094 4.35948 4.59469 5.12472 5.14568 5.21714 5.49865 5.54515 5.61248 5.71396 5.74350 5.82711 5.96603 5.98002 5.99624 6.09692 6.29230 6.37113 6.45828 6.65678 6.86138 6.89099 7.15516 7.41547 7.51336 7.56352 8.23944 8.37075 8.66080 8.96978 10.26283 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.021707 B = 0.008313 C = 0.006523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.604589 B = 3367.546696 C = 4291.647755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.077 4.077 3 C -0.101 4.101 4 C -0.121 4.121 5 C -0.092 4.092 6 C -0.130 4.130 7 S -0.020 6.020 8 C -0.167 4.167 9 O -0.268 6.268 10 C 0.028 3.972 11 C 0.049 3.951 12 C -0.428 4.428 13 H 0.089 0.911 14 C 0.099 3.901 15 N -0.813 5.813 16 Si 0.925 3.075 17 H -0.275 1.275 18 H -0.302 1.302 19 H -0.252 1.252 20 C -0.033 4.033 21 C -0.071 4.071 22 H 0.053 0.947 23 H 0.052 0.948 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.117 0.883 28 H 0.113 0.887 29 H 0.046 0.954 30 H 0.088 0.912 31 H 0.041 0.959 32 H 0.280 0.720 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.547 -2.251 -10.110 10.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 C -0.104 4.104 4 C -0.141 4.141 5 C -0.115 4.115 6 C -0.245 4.245 7 S 0.238 5.762 8 C -0.324 4.324 9 O -0.184 6.184 10 C -0.069 4.069 11 C 0.040 3.960 12 C -0.460 4.460 13 H 0.107 0.893 14 C -0.119 4.119 15 N -0.439 5.439 16 Si 0.755 3.245 17 H -0.201 1.201 18 H -0.231 1.231 19 H -0.176 1.176 20 C -0.041 4.041 21 C -0.091 4.091 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.135 0.865 28 H 0.131 0.869 29 H 0.065 0.935 30 H 0.106 0.894 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.120 -1.000 -10.483 10.532 hybrid contribution 0.492 -0.446 0.645 0.926 sum 0.373 -1.446 -9.838 9.951 Atomic orbital electron populations 1.21754 0.95236 1.01044 1.02295 1.20440 0.95797 0.92966 1.02276 1.19508 1.01814 0.96141 0.92963 1.20604 1.02257 0.94206 0.97067 1.20306 1.01544 0.94540 0.95126 1.22142 1.07867 0.97605 0.96876 1.83020 1.75244 1.12949 1.04975 1.22140 1.29628 0.93057 0.87534 1.85562 1.81253 1.21705 1.29832 1.22847 0.98238 0.86158 0.99672 1.17009 0.98107 0.87883 0.93028 1.18522 1.12060 1.26306 0.89082 0.89313 1.25918 1.00957 0.91036 0.94002 1.69924 1.36117 1.35863 1.01967 0.85708 0.80079 0.77916 0.80838 1.20125 1.23127 1.17649 1.19330 0.99038 0.94033 0.91735 1.20809 0.97856 0.92956 0.97448 0.92808 0.92938 0.92366 0.91606 0.91234 0.86536 0.86854 0.93514 0.89369 0.94084 0.90977 0.85784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.90 37.16 0.37 -1.36 16 2 C -0.08 -1.01 6.06 -27.88 -0.17 -1.17 16 3 C -0.10 -1.68 5.12 -104.79 -0.54 -2.22 16 4 C -0.12 -1.92 9.68 -39.65 -0.38 -2.30 16 5 C -0.09 -1.62 10.06 -39.21 -0.39 -2.01 16 6 C -0.13 -2.76 6.41 -38.61 -0.25 -3.01 16 7 S -0.02 -0.43 21.83 -107.50 -2.35 -2.78 16 8 C -0.17 -4.17 5.29 30.45 0.16 -4.01 16 9 O -0.27 -6.56 5.95 -17.44 -0.10 -6.67 16 10 C 0.03 0.53 10.18 101.05 1.03 1.56 16 11 C 0.05 1.29 4.92 -105.91 -0.52 0.77 16 12 C -0.43 -11.96 9.39 -38.17 -0.36 -12.32 16 13 H 0.09 2.55 8.06 -52.48 -0.42 2.12 16 14 C 0.10 2.74 5.09 -17.31 -0.09 2.66 16 15 N -0.81 -22.79 13.95 55.53 0.77 -22.01 16 16 Si 0.93 23.12 24.17 -169.99 -4.11 19.01 16 17 H -0.27 -6.68 7.00 56.52 0.40 -6.28 16 18 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 19 H -0.25 -6.51 6.23 56.52 0.35 -6.16 16 20 C -0.03 -0.76 6.00 -105.16 -0.63 -1.39 16 21 C -0.07 -1.43 9.46 -38.91 -0.37 -1.80 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 26 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 27 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 28 H 0.11 1.71 8.06 -52.48 -0.42 1.28 16 29 H 0.05 0.81 7.99 -51.93 -0.41 0.39 16 30 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.04 0.73 8.04 -51.93 -0.42 0.32 16 32 H 0.28 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.12 2.45 8.03 -52.49 -0.42 2.03 16 LS Contribution 289.07 15.07 4.36 4.36 Total: -1.00 -29.79 289.07 -7.81 -37.60 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: -4.24 Total: -2.90 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: -2.14 Total: -26.60 kcal Atomic # 7 Polarization: -22.79 SS G_CDS: 0.77 Total: -22.01 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -0.10 Total: -6.67 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -4.11 Total: 19.01 kcal Atomic # 16 Polarization: -0.43 SS G_CDS: -2.35 Total: -2.78 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.79 -7.81 -37.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396302831.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.403 kcal (2) G-P(sol) polarization free energy of solvation -29.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds