Wall clock time and date at job start Mon Mar 30 2020 06:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50698 * 109.47136 * 2 1 4 4 C 1.37647 * 119.45690 * 264.99980 * 3 2 1 5 5 C 1.40317 * 120.13701 * 179.97438 * 4 3 2 6 6 C 1.40589 * 120.40573 * 179.97438 * 5 4 3 7 7 H 1.08001 * 120.00135 * 204.79343 * 6 5 4 8 8 C 1.40003 * 119.99569 * 24.78680 * 6 5 4 9 9 N 1.30828 * 120.00433 * 17.81601 * 8 6 5 10 10 Si 1.86804 * 119.99733 * 197.81113 * 8 6 5 11 11 H 1.48500 * 109.46991 * 0.02562 * 10 8 6 12 12 H 1.48491 * 109.46910 * 120.00371 * 10 8 6 13 13 H 1.48501 * 109.46836 * 240.00382 * 10 8 6 14 14 C 1.47862 * 119.19503 * 359.97438 * 5 4 3 15 15 C 1.39988 * 129.23907 * 179.97438 * 14 5 4 16 16 C 1.32720 * 115.80911 * 180.02562 * 15 14 5 17 17 S 1.75511 * 110.66709 * 359.97438 * 16 15 14 18 18 C 1.39737 * 118.06282 * 359.97438 * 14 5 4 19 19 C 1.38116 * 119.45227 * 84.72474 * 3 2 1 20 20 C 1.50700 * 119.27963 * 0.02749 * 19 3 2 21 21 O 1.42901 * 109.47166 * 89.99636 * 20 19 3 22 22 H 1.08997 * 109.47055 * 60.00262 * 1 2 3 23 23 H 1.09003 * 109.46842 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47455 * 299.99531 * 1 2 3 25 25 H 1.08998 * 109.47246 * 120.00253 * 2 1 3 26 26 H 1.08998 * 109.46967 * 240.00268 * 2 1 3 27 27 H 1.08002 * 119.93176 * 359.97438 * 4 3 2 28 28 H 0.96999 * 120.00615 * 179.97438 * 9 8 6 29 29 H 1.08004 * 122.09505 * 359.97438 * 15 14 5 30 30 H 1.07998 * 124.66565 * 180.02562 * 16 15 14 31 31 H 1.09002 * 109.47122 * 210.00232 * 20 19 3 32 32 H 1.09000 * 109.46966 * 329.99720 * 20 19 3 33 33 H 0.96703 * 113.99745 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3564 2.0242 -1.1940 5 6 2.8250 3.3467 -1.2106 6 6 3.1582 3.9683 -2.4268 7 1 3.8652 4.7846 -2.4402 8 6 2.5735 3.5290 -3.6206 9 7 1.4855 2.8031 -3.5879 10 14 3.3468 3.9793 -5.2604 11 1 4.5618 4.8003 -5.0258 12 1 3.7201 2.7402 -5.9884 13 1 2.3734 4.7551 -6.0702 14 6 2.9640 4.0787 0.0665 15 6 3.4055 5.3876 0.2934 16 6 3.4256 5.7791 1.5614 17 16 2.8710 4.4906 2.6163 18 6 2.6185 3.4141 1.2462 19 6 2.1544 2.0979 1.1976 20 6 1.7826 1.3997 2.4803 21 8 2.9301 0.7323 3.0092 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 2.2499 1.4785 -2.1199 28 1 1.0802 2.4990 -4.4150 29 1 3.7115 6.0379 -0.5128 30 1 3.7392 6.7562 1.8978 31 1 1.4238 2.1332 3.2024 32 1 0.9971 0.6704 2.2824 33 1 2.7639 0.2600 3.8366 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396303252.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:20 Heat of formation + Delta-G solvation = -30.090416 kcal Electronic energy + Delta-G solvation = -17383.173878 eV Core-core repulsion = 14692.134025 eV Total energy + Delta-G solvation = -2691.039854 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.51908 -36.26305 -34.84989 -34.23745 -31.54812 -30.27631 -27.59182 -26.68557 -23.80634 -23.20217 -21.34259 -20.36333 -18.78688 -17.49840 -16.81747 -16.16441 -15.12782 -14.97699 -14.39540 -13.85539 -13.64262 -13.13579 -12.87709 -12.63181 -12.48282 -12.20761 -11.83230 -11.62141 -11.48246 -11.21328 -11.11631 -10.84766 -10.55319 -10.39440 -10.27165 -9.83332 -9.64102 -9.46239 -9.33771 -9.22242 -8.19847 -7.21700 -7.02664 -6.73694 -4.52856 1.95163 2.58134 2.72170 2.92058 2.97145 3.00518 3.12142 3.60431 3.70278 4.27478 5.12138 5.47090 5.64407 5.70457 5.82108 5.89464 5.92774 6.07149 6.20696 6.38436 6.40376 6.49421 6.53126 6.57381 6.78691 6.83496 7.01958 7.15369 7.23771 7.35328 7.70316 7.78580 7.87361 8.02291 8.20115 8.35905 8.54645 8.70231 9.80802 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.017850 B = 0.008571 C = 0.006118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.248739 B = 3266.093450 C = 4575.665251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.081 4.081 3 C -0.004 4.004 4 C -0.195 4.195 5 C 0.160 3.840 6 C -0.425 4.425 7 H 0.087 0.913 8 C 0.073 3.927 9 N -0.762 5.762 10 Si 0.915 3.085 11 H -0.256 1.256 12 H -0.268 1.268 13 H -0.270 1.270 14 C -0.199 4.199 15 C -0.056 4.056 16 C -0.281 4.281 17 S -0.002 6.002 18 C -0.043 4.043 19 C -0.208 4.208 20 C 0.135 3.865 21 O -0.568 6.568 22 H 0.060 0.940 23 H 0.045 0.955 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.124 0.876 28 H 0.288 0.712 29 H 0.123 0.877 30 H 0.144 0.856 31 H 0.030 0.970 32 H 0.044 0.956 33 H 0.359 0.641 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.065 -2.188 3.654 4.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.119 4.119 3 C -0.007 4.007 4 C -0.216 4.216 5 C 0.154 3.846 6 C -0.452 4.452 7 H 0.105 0.895 8 C -0.149 4.149 9 N -0.384 5.384 10 Si 0.738 3.262 11 H -0.180 1.180 12 H -0.192 1.192 13 H -0.195 1.195 14 C -0.205 4.205 15 C -0.085 4.085 16 C -0.414 4.414 17 S 0.259 5.741 18 C -0.158 4.158 19 C -0.216 4.216 20 C 0.059 3.941 21 O -0.372 6.372 22 H 0.079 0.921 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.142 0.858 28 H 0.099 0.901 29 H 0.141 0.859 30 H 0.161 0.839 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -1.135 -2.034 4.510 5.076 hybrid contribution 0.128 0.255 -1.729 1.752 sum -1.006 -1.779 2.782 3.452 Atomic orbital electron populations 1.21731 0.95685 1.00234 1.02275 1.20500 0.95395 0.94504 1.01494 1.19077 0.95501 0.93631 0.92478 1.20872 1.09641 0.94981 0.96145 1.18452 0.86367 0.90329 0.89433 1.19696 1.20295 1.14549 0.90658 0.89510 1.26108 0.93542 0.93201 1.02093 1.69840 1.13263 1.24305 1.30969 0.86135 0.80449 0.79640 0.80003 1.17951 1.19240 1.19548 1.19116 1.13914 0.93985 0.93502 1.19699 0.97848 0.95375 0.95610 1.24499 1.18025 1.02619 0.96266 1.83391 1.72365 1.06851 1.11541 1.22032 1.02343 0.97033 0.94373 1.17750 1.18641 0.92667 0.92553 1.20826 0.86851 0.93569 0.92896 1.86730 1.37204 1.70877 1.42395 0.92134 0.93625 0.93055 0.91851 0.91986 0.85841 0.90127 0.85904 0.83865 0.95142 0.93770 0.79633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.67 37.16 0.36 -2.00 16 2 C -0.08 -1.53 5.34 -27.89 -0.15 -1.68 16 3 C 0.00 -0.09 5.11 -104.88 -0.54 -0.63 16 4 C -0.19 -4.89 8.26 -39.02 -0.32 -5.21 16 5 C 0.16 4.15 5.76 -104.29 -0.60 3.55 16 6 C -0.42 -10.58 8.83 -38.03 -0.34 -10.91 16 7 H 0.09 2.07 7.52 -52.49 -0.39 1.68 16 8 C 0.07 1.68 5.13 -17.32 -0.09 1.60 16 9 N -0.76 -18.02 10.97 55.55 0.61 -17.41 16 10 Si 0.91 17.18 29.60 -169.99 -5.03 12.15 16 11 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 12 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 13 H -0.27 -5.00 7.11 56.52 0.40 -4.59 16 14 C -0.20 -5.02 6.02 -104.74 -0.63 -5.65 16 15 C -0.06 -1.26 9.76 -40.81 -0.40 -1.66 16 16 C -0.28 -5.78 11.11 28.85 0.32 -5.46 16 17 S 0.00 -0.04 22.56 -107.50 -2.42 -2.46 16 18 C -0.04 -1.03 6.29 -38.50 -0.24 -1.28 16 19 C -0.21 -4.82 5.54 -104.14 -0.58 -5.39 16 20 C 0.14 2.59 6.17 36.01 0.22 2.81 16 21 O -0.57 -10.46 13.58 -35.23 -0.48 -10.94 16 22 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.05 0.84 6.82 -51.93 -0.35 0.48 16 25 H 0.06 1.14 6.84 -51.93 -0.36 0.78 16 26 H 0.06 1.13 8.03 -51.93 -0.42 0.72 16 27 H 0.12 3.12 6.15 -52.49 -0.32 2.80 16 28 H 0.29 6.08 8.30 -40.82 -0.34 5.74 16 29 H 0.12 2.56 7.72 -52.48 -0.41 2.16 16 30 H 0.14 2.48 8.06 -52.49 -0.42 2.06 16 31 H 0.03 0.56 7.55 -51.93 -0.39 0.17 16 32 H 0.04 0.76 5.21 -51.93 -0.27 0.49 16 33 H 0.36 4.50 9.12 45.56 0.42 4.92 16 LS Contribution 288.60 15.07 4.35 4.35 Total: -1.00 -28.05 288.60 -8.85 -36.90 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -2.90 Total: 9.32 kcal Atomic # 6 Polarization: -28.94 SS G_CDS: -2.98 Total: -31.91 kcal Atomic # 7 Polarization: -18.02 SS G_CDS: 0.61 Total: -17.41 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: -0.48 Total: -10.94 kcal Atomic # 14 Polarization: 17.18 SS G_CDS: -5.03 Total: 12.15 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -2.42 Total: -2.46 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.05 -8.85 -36.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396303252.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.814 kcal (2) G-P(sol) polarization free energy of solvation -28.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds