Wall clock time and date at job start Mon Mar 30 2020 06:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50698 * 109.47136 * 2 1 4 4 C 1.37647 * 119.45690 * 264.99980 * 3 2 1 5 5 C 1.40317 * 120.13701 * 179.97438 * 4 3 2 6 6 C 1.40589 * 120.40573 * 179.97438 * 5 4 3 7 7 H 1.08001 * 120.00135 * 204.79343 * 6 5 4 8 8 C 1.40003 * 119.99569 * 24.78680 * 6 5 4 9 9 N 1.30828 * 120.00433 * 17.81601 * 8 6 5 10 10 Si 1.86804 * 119.99733 * 197.81113 * 8 6 5 11 11 H 1.48500 * 109.46991 * 0.02562 * 10 8 6 12 12 H 1.48491 * 109.46910 * 120.00371 * 10 8 6 13 13 H 1.48501 * 109.46836 * 240.00382 * 10 8 6 14 14 C 1.47862 * 119.19503 * 359.97438 * 5 4 3 15 15 C 1.39988 * 129.23907 * 179.97438 * 14 5 4 16 16 C 1.32720 * 115.80911 * 180.02562 * 15 14 5 17 17 S 1.75511 * 110.66709 * 359.97438 * 16 15 14 18 18 C 1.39737 * 118.06282 * 359.97438 * 14 5 4 19 19 C 1.38116 * 119.45227 * 84.72474 * 3 2 1 20 20 C 1.50700 * 119.27963 * 0.02749 * 19 3 2 21 21 O 1.42901 * 109.47166 * 89.99636 * 20 19 3 22 22 H 1.08997 * 109.47055 * 60.00262 * 1 2 3 23 23 H 1.09003 * 109.46842 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47455 * 299.99531 * 1 2 3 25 25 H 1.08998 * 109.47246 * 120.00253 * 2 1 3 26 26 H 1.08998 * 109.46967 * 240.00268 * 2 1 3 27 27 H 1.08002 * 119.93176 * 359.97438 * 4 3 2 28 28 H 0.96999 * 120.00615 * 179.97438 * 9 8 6 29 29 H 1.08004 * 122.09505 * 359.97438 * 15 14 5 30 30 H 1.07998 * 124.66565 * 180.02562 * 16 15 14 31 31 H 1.09002 * 109.47122 * 210.00232 * 20 19 3 32 32 H 1.09000 * 109.46966 * 329.99720 * 20 19 3 33 33 H 0.96703 * 113.99745 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3564 2.0242 -1.1940 5 6 2.8250 3.3467 -1.2106 6 6 3.1582 3.9683 -2.4268 7 1 3.8652 4.7846 -2.4402 8 6 2.5735 3.5290 -3.6206 9 7 1.4855 2.8031 -3.5879 10 14 3.3468 3.9793 -5.2604 11 1 4.5618 4.8003 -5.0258 12 1 3.7201 2.7402 -5.9884 13 1 2.3734 4.7551 -6.0702 14 6 2.9640 4.0787 0.0665 15 6 3.4055 5.3876 0.2934 16 6 3.4256 5.7791 1.5614 17 16 2.8710 4.4906 2.6163 18 6 2.6185 3.4141 1.2462 19 6 2.1544 2.0979 1.1976 20 6 1.7826 1.3997 2.4803 21 8 2.9301 0.7323 3.0092 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 2.2499 1.4785 -2.1199 28 1 1.0802 2.4990 -4.4150 29 1 3.7115 6.0379 -0.5128 30 1 3.7392 6.7562 1.8978 31 1 1.4238 2.1332 3.2024 32 1 0.9971 0.6704 2.2824 33 1 2.7639 0.2600 3.8366 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396303252.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:20 Heat of formation + Delta-G solvation = -46.526267 kcal Electronic energy + Delta-G solvation = -17383.886590 eV Core-core repulsion = 14692.134025 eV Total energy + Delta-G solvation = -2691.752566 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.22856 -37.81055 -36.50760 -35.91615 -33.14842 -32.00866 -29.27206 -28.36159 -25.48203 -24.81692 -22.97648 -22.09074 -20.52039 -19.24538 -18.23761 -17.87551 -16.76313 -16.62123 -16.09585 -15.43382 -15.22711 -14.71758 -14.34355 -14.31296 -14.10137 -13.78325 -13.47879 -13.17417 -13.03940 -12.90384 -12.72485 -12.46906 -12.07033 -11.98141 -11.80350 -11.53367 -11.29835 -11.17924 -10.97696 -10.75120 -9.97884 -8.96535 -8.77122 -8.46782 -6.36193 0.20048 0.83662 1.00758 1.35616 1.39268 1.45585 1.52259 1.83329 2.13353 2.54060 3.48256 3.92084 4.12702 4.24402 4.31168 4.33371 4.41547 4.59941 4.66808 4.82463 4.84682 4.91166 4.98418 5.03454 5.08104 5.29112 5.42826 5.43954 5.46680 5.58814 5.93100 5.98867 6.10481 6.22235 6.55352 6.72906 6.88335 7.06461 8.12469 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.017850 B = 0.008571 C = 0.006118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.248739 B = 3266.093450 C = 4575.665251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.077 4.077 3 C -0.013 4.013 4 C -0.222 4.222 5 C 0.126 3.874 6 C -0.458 4.458 7 H 0.084 0.916 8 C 0.037 3.963 9 N -0.791 5.791 10 Si 0.987 3.013 11 H -0.257 1.257 12 H -0.260 1.260 13 H -0.261 1.261 14 C -0.227 4.227 15 C -0.085 4.085 16 C -0.263 4.263 17 S 0.039 5.961 18 C -0.080 4.080 19 C -0.222 4.222 20 C 0.143 3.857 21 O -0.585 6.585 22 H 0.039 0.961 23 H 0.079 0.921 24 H 0.054 0.946 25 H 0.077 0.923 26 H 0.060 0.940 27 H 0.111 0.889 28 H 0.297 0.703 29 H 0.130 0.870 30 H 0.181 0.819 31 H 0.037 0.963 32 H 0.066 0.934 33 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.167 -2.341 4.699 5.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.115 4.115 3 C -0.015 4.015 4 C -0.243 4.243 5 C 0.121 3.879 6 C -0.485 4.485 7 H 0.102 0.898 8 C -0.183 4.183 9 N -0.414 5.414 10 Si 0.806 3.194 11 H -0.180 1.180 12 H -0.185 1.185 13 H -0.185 1.185 14 C -0.233 4.233 15 C -0.114 4.114 16 C -0.395 4.395 17 S 0.300 5.700 18 C -0.195 4.195 19 C -0.230 4.230 20 C 0.066 3.934 21 O -0.393 6.393 22 H 0.058 0.942 23 H 0.098 0.902 24 H 0.073 0.927 25 H 0.096 0.904 26 H 0.079 0.921 27 H 0.128 0.872 28 H 0.108 0.892 29 H 0.148 0.852 30 H 0.198 0.802 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -1.248 -2.205 5.596 6.143 hybrid contribution 0.162 0.318 -1.861 1.895 sum -1.086 -1.887 3.735 4.324 Atomic orbital electron populations 1.21663 0.93830 1.02205 1.01418 1.20528 0.96871 0.92013 1.02075 1.19528 0.94539 0.95565 0.91914 1.20881 1.11718 0.95131 0.96618 1.18855 0.87372 0.91143 0.90484 1.19881 1.21453 1.15504 0.91647 0.89818 1.26917 0.93533 0.92792 1.05013 1.69869 1.14163 1.24987 1.32387 0.85079 0.79411 0.79505 0.75384 1.18032 1.18455 1.18541 1.19534 1.14549 0.95323 0.93885 1.19831 0.99643 0.94984 0.96947 1.25017 1.15174 1.03866 0.95469 1.83116 1.71601 1.05591 1.09662 1.22519 1.02987 0.98285 0.95676 1.18303 1.17489 0.92828 0.94385 1.20709 0.87318 0.94135 0.91237 1.86638 1.37071 1.71245 1.44348 0.94192 0.90192 0.92684 0.90447 0.92092 0.87166 0.89209 0.85215 0.80151 0.94518 0.91612 0.76436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.26 9.67 71.98 0.70 -3.57 16 2 C -0.08 -2.86 5.34 29.85 0.16 -2.70 16 3 C -0.01 -0.59 5.11 -20.03 -0.10 -0.69 16 4 C -0.22 -11.64 8.26 22.64 0.19 -11.46 16 5 C 0.13 6.90 5.76 -19.65 -0.11 6.79 16 6 C -0.46 -23.88 8.83 23.27 0.21 -23.68 16 7 H 0.08 4.21 7.52 -2.91 -0.02 4.19 16 8 C 0.04 1.76 5.13 85.27 0.44 2.20 16 9 N -0.79 -38.78 10.97 21.84 0.24 -38.54 16 10 Si 0.99 35.78 29.60 68.60 2.03 37.81 16 11 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 12 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 13 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 14 C -0.23 -11.73 6.02 -19.94 -0.12 -11.85 16 15 C -0.08 -3.84 9.76 21.52 0.21 -3.63 16 16 C -0.26 -10.30 11.11 66.65 0.74 -9.56 16 17 S 0.04 1.58 22.56 -56.49 -1.27 0.31 16 18 C -0.08 -3.86 6.29 22.97 0.14 -3.71 16 19 C -0.22 -10.24 5.54 -19.55 -0.11 -10.35 16 20 C 0.14 5.17 6.17 71.24 0.44 5.61 16 21 O -0.59 -20.10 13.58 -148.98 -2.02 -22.12 16 22 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.05 1.69 6.82 -2.39 -0.02 1.67 16 25 H 0.08 2.62 6.84 -2.39 -0.02 2.61 16 26 H 0.06 2.23 8.03 -2.39 -0.02 2.21 16 27 H 0.11 5.90 6.15 -2.91 -0.02 5.89 16 28 H 0.30 12.87 8.30 -92.71 -0.77 12.10 16 29 H 0.13 5.53 7.72 -2.91 -0.02 5.50 16 30 H 0.18 5.61 8.06 -2.91 -0.02 5.59 16 31 H 0.04 1.27 7.55 -2.39 -0.02 1.26 16 32 H 0.07 2.08 5.21 -2.39 -0.01 2.07 16 33 H 0.39 8.44 9.12 -74.06 -0.68 7.76 16 Total: -1.00 -62.29 288.60 2.22 -60.07 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: 0.47 Total: 29.08 kcal Atomic # 6 Polarization: -69.38 SS G_CDS: 2.78 Total: -66.60 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.24 Total: -38.54 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -2.02 Total: -22.12 kcal Atomic # 14 Polarization: 35.78 SS G_CDS: 2.03 Total: 37.81 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -1.27 Total: 0.31 kcal Total: -62.29 2.22 -60.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396303252.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.542 kcal (2) G-P(sol) polarization free energy of solvation -62.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds