Wall clock time and date at job start Mon Mar 30 2020 06:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50696 * 109.47572 * 2 1 4 4 C 1.38888 * 119.69758 * 90.00135 * 3 2 1 5 5 C 1.37705 * 120.19490 * 179.97438 * 4 3 2 6 6 C 1.39635 * 120.30332 * 0.02562 * 5 4 3 7 7 S 1.75971 * 130.11741 * 180.32098 * 6 5 4 8 8 C 1.75423 * 91.91703 * 180.02562 * 7 6 5 9 9 C 1.39655 * 124.85024 * 179.97438 * 8 7 6 10 10 H 1.07999 * 120.00210 * 179.69724 * 9 8 7 11 11 C 1.40050 * 119.99808 * 359.69160 * 9 8 7 12 12 N 1.30910 * 119.99664 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00158 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46692 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.46785 * 120.00534 * 13 11 9 16 16 H 1.48497 * 109.47025 * 240.00334 * 13 11 9 17 17 C 1.37632 * 110.30482 * 359.67851 * 8 7 6 18 18 O 1.35643 * 122.62456 * 180.21966 * 17 8 7 19 19 C 1.42897 * 116.99574 * 90.02765 * 18 17 8 20 20 C 1.40119 * 119.75190 * 0.02562 * 6 5 4 21 21 C 1.36007 * 119.70722 * 270.02906 * 3 2 1 22 22 H 1.09003 * 109.47211 * 59.99360 * 1 2 3 23 23 H 1.08996 * 109.47863 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47171 * 299.99575 * 1 2 3 25 25 H 1.09005 * 109.47171 * 240.00424 * 2 1 3 26 26 H 1.09003 * 109.47211 * 120.00640 * 2 1 3 27 27 H 1.08003 * 119.89899 * 0.02562 * 4 3 2 28 28 H 1.08004 * 119.84279 * 180.02562 * 5 4 3 29 29 H 0.97005 * 119.99785 * 179.97438 * 12 11 9 30 30 H 1.08999 * 109.47203 * 300.00096 * 19 18 17 31 31 H 1.09000 * 109.47346 * 59.99980 * 19 18 17 32 32 H 1.08998 * 109.47290 * 179.97438 * 19 18 17 33 33 H 1.08000 * 119.74047 * 359.97438 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2618 2.0694 1.2065 5 6 2.7214 3.3675 1.2184 6 6 2.9598 4.0416 0.0190 7 16 3.5464 5.6760 -0.2659 8 6 3.4641 5.4654 -2.0055 9 6 3.8103 6.4395 -2.9445 10 1 3.7339 6.2235 -3.9999 11 6 4.2564 7.6965 -2.5175 12 7 4.3493 7.9582 -1.2382 13 14 4.7201 8.9993 -3.7734 14 1 4.5281 8.4573 -5.1425 15 1 3.8576 10.1939 -3.5888 16 1 6.1427 9.3822 -3.5871 17 6 3.0160 4.2010 -2.3129 18 8 2.8625 3.7698 -3.5898 19 6 3.9891 3.1379 -4.2009 20 6 2.7291 3.3925 -1.2012 21 6 2.2565 2.0564 -1.1813 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3635 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8901 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 2.0800 1.5540 2.1380 28 1 2.8983 3.8663 2.1599 29 1 4.6586 8.8287 -0.9424 30 1 4.8272 3.8343 -4.2256 31 1 4.2672 2.2551 -3.6251 32 1 3.7322 2.8417 -5.2179 33 1 2.0734 1.5388 -2.1114 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396303624.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:57 Heat of formation + Delta-G solvation = -34.848450 kcal Electronic energy + Delta-G solvation = -17071.766947 eV Core-core repulsion = 14380.520770 eV Total energy + Delta-G solvation = -2691.246177 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.69586 -36.98188 -34.56237 -33.85237 -31.64220 -29.41074 -28.49074 -26.39410 -24.96037 -23.30050 -21.69053 -20.78468 -18.79172 -18.01217 -16.17062 -15.86020 -15.24080 -14.49168 -14.44371 -14.25987 -13.72416 -13.39666 -12.98614 -12.85442 -12.50171 -12.44401 -12.02946 -11.80724 -11.57204 -11.47751 -11.10140 -10.80638 -10.67219 -10.56482 -10.32425 -10.27834 -9.94597 -9.23493 -9.18429 -8.55109 -8.30524 -7.43341 -7.25320 -6.33140 -4.68780 2.04671 2.38190 2.75775 2.81818 2.90428 3.18600 3.37343 3.53691 3.76853 4.56996 4.79572 5.35275 5.39376 5.49694 5.77100 5.85301 5.99916 6.02851 6.16132 6.21065 6.24002 6.30601 6.42799 6.48137 6.52324 6.59733 6.70358 6.93361 7.16360 7.22676 7.47846 7.51160 7.63267 7.83030 7.95194 8.12700 8.35250 9.07237 9.56274 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.030738 B = 0.006327 C = 0.005434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.718905 B = 4424.221817 C = 5151.421104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.077 4.077 3 C -0.077 4.077 4 C -0.187 4.187 5 C -0.053 4.053 6 C -0.262 4.262 7 S 0.154 5.846 8 C 0.036 3.964 9 C -0.362 4.362 10 H 0.103 0.897 11 C 0.050 3.950 12 N -0.771 5.771 13 Si 0.940 3.060 14 H -0.254 1.254 15 H -0.266 1.266 16 H -0.267 1.267 17 C -0.170 4.170 18 O -0.299 6.299 19 C 0.023 3.977 20 C 0.009 3.991 21 C -0.136 4.136 22 H 0.055 0.945 23 H 0.048 0.952 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.302 0.698 30 H 0.032 0.968 31 H 0.024 0.976 32 H 0.066 0.934 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.418 -3.956 0.806 4.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 C -0.079 4.079 4 C -0.207 4.207 5 C -0.076 4.076 6 C -0.377 4.377 7 S 0.413 5.587 8 C -0.084 4.084 9 C -0.395 4.395 10 H 0.121 0.879 11 C -0.172 4.172 12 N -0.397 5.397 13 Si 0.762 3.238 14 H -0.177 1.177 15 H -0.191 1.191 16 H -0.192 1.192 17 C -0.220 4.220 18 O -0.215 6.215 19 C -0.073 4.073 20 C 0.001 3.999 21 C -0.156 4.156 22 H 0.074 0.926 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.115 0.885 30 H 0.051 0.949 31 H 0.043 0.957 32 H 0.084 0.916 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.090 -2.582 1.753 3.122 hybrid contribution 0.117 -0.673 -1.286 1.456 sum 0.028 -3.255 0.467 3.288 Atomic orbital electron populations 1.21727 0.95545 1.00583 1.02221 1.20436 0.95615 0.93905 1.01508 1.19014 1.00486 0.95092 0.93340 1.20345 1.08796 0.95389 0.96207 1.20161 0.98495 0.93922 0.94994 1.23382 1.14091 1.04243 0.95941 1.84777 1.69091 1.04349 1.00468 1.21677 0.95037 0.95542 0.96177 1.19307 1.30490 0.94087 0.95635 0.87869 1.26398 0.93429 1.00543 0.96802 1.68698 1.31042 1.24426 1.15536 0.85681 0.79008 0.78673 0.80406 1.17720 1.19075 1.19172 1.17067 1.28768 0.93227 0.82934 1.86107 1.33955 1.76413 1.24990 1.22889 0.91641 0.96158 0.96568 1.18036 0.96353 0.93229 0.92280 1.20296 1.04840 0.94110 0.96373 0.92624 0.93303 0.92768 0.92018 0.92008 0.87907 0.87926 0.88457 0.94887 0.95710 0.91552 0.88060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.89 37.15 0.37 -1.61 16 2 C -0.08 -1.18 6.04 -27.89 -0.17 -1.35 16 3 C -0.08 -1.51 5.08 -105.18 -0.53 -2.04 16 4 C -0.19 -3.65 9.68 -39.54 -0.38 -4.03 16 5 C -0.05 -1.14 10.07 -39.25 -0.40 -1.53 16 6 C -0.26 -6.35 6.46 -38.35 -0.25 -6.60 16 7 S 0.15 3.77 20.10 -107.50 -2.16 1.60 16 8 C 0.04 0.94 6.12 -39.27 -0.24 0.70 16 9 C -0.36 -9.03 9.08 -38.37 -0.35 -9.38 16 10 H 0.10 2.53 7.71 -52.49 -0.40 2.12 16 11 C 0.05 1.13 5.50 -17.27 -0.09 1.04 16 12 N -0.77 -17.72 10.58 55.56 0.59 -17.13 16 13 Si 0.94 16.86 29.56 -169.99 -5.03 11.83 16 14 H -0.25 -4.55 7.11 56.52 0.40 -4.15 16 15 H -0.27 -4.67 7.11 56.52 0.40 -4.27 16 16 H -0.27 -4.66 7.11 56.52 0.40 -4.26 16 17 C -0.17 -4.45 5.87 -38.98 -0.23 -4.68 16 18 O -0.30 -7.42 10.07 -18.63 -0.19 -7.61 16 19 C 0.02 0.48 11.13 101.05 1.12 1.60 16 20 C 0.01 0.22 5.86 -107.03 -0.63 -0.40 16 21 C -0.14 -3.05 9.57 -39.05 -0.37 -3.42 16 22 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.90 8.07 -51.93 -0.42 0.48 16 26 H 0.06 0.85 8.08 -51.93 -0.42 0.43 16 27 H 0.10 1.71 8.06 -52.48 -0.42 1.29 16 28 H 0.10 1.94 8.06 -52.48 -0.42 1.52 16 29 H 0.30 6.14 8.30 -40.82 -0.34 5.80 16 30 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.10 2.18 8.06 -52.49 -0.42 1.75 16 LS Contribution 297.17 15.07 4.48 4.48 Total: -1.00 -27.30 297.17 -8.64 -35.94 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -4.18 Total: 2.59 kcal Atomic # 6 Polarization: -29.56 SS G_CDS: -2.15 Total: -31.71 kcal Atomic # 7 Polarization: -17.72 SS G_CDS: 0.59 Total: -17.13 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -0.19 Total: -7.61 kcal Atomic # 14 Polarization: 16.86 SS G_CDS: -5.03 Total: 11.83 kcal Atomic # 16 Polarization: 3.77 SS G_CDS: -2.16 Total: 1.60 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.30 -8.64 -35.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396303624.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.092 kcal (2) G-P(sol) polarization free energy of solvation -27.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds