Wall clock time and date at job start Mon Mar 30 2020 06:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50696 * 109.47572 * 2 1 4 4 C 1.38888 * 119.69758 * 90.00135 * 3 2 1 5 5 C 1.37705 * 120.19490 * 179.97438 * 4 3 2 6 6 C 1.39635 * 120.30332 * 0.02562 * 5 4 3 7 7 S 1.75971 * 130.11741 * 180.32098 * 6 5 4 8 8 C 1.75423 * 91.91703 * 180.02562 * 7 6 5 9 9 C 1.39655 * 124.85024 * 179.97438 * 8 7 6 10 10 H 1.07999 * 120.00210 * 179.69724 * 9 8 7 11 11 C 1.40050 * 119.99808 * 359.69160 * 9 8 7 12 12 N 1.30910 * 119.99664 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00158 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46692 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.46785 * 120.00534 * 13 11 9 16 16 H 1.48497 * 109.47025 * 240.00334 * 13 11 9 17 17 C 1.37632 * 110.30482 * 359.67851 * 8 7 6 18 18 O 1.35643 * 122.62456 * 180.21966 * 17 8 7 19 19 C 1.42897 * 116.99574 * 90.02765 * 18 17 8 20 20 C 1.40119 * 119.75190 * 0.02562 * 6 5 4 21 21 C 1.36007 * 119.70722 * 270.02906 * 3 2 1 22 22 H 1.09003 * 109.47211 * 59.99360 * 1 2 3 23 23 H 1.08996 * 109.47863 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47171 * 299.99575 * 1 2 3 25 25 H 1.09005 * 109.47171 * 240.00424 * 2 1 3 26 26 H 1.09003 * 109.47211 * 120.00640 * 2 1 3 27 27 H 1.08003 * 119.89899 * 0.02562 * 4 3 2 28 28 H 1.08004 * 119.84279 * 180.02562 * 5 4 3 29 29 H 0.97005 * 119.99785 * 179.97438 * 12 11 9 30 30 H 1.08999 * 109.47203 * 300.00096 * 19 18 17 31 31 H 1.09000 * 109.47346 * 59.99980 * 19 18 17 32 32 H 1.08998 * 109.47290 * 179.97438 * 19 18 17 33 33 H 1.08000 * 119.74047 * 359.97438 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2618 2.0694 1.2065 5 6 2.7214 3.3675 1.2184 6 6 2.9598 4.0416 0.0190 7 16 3.5464 5.6760 -0.2659 8 6 3.4641 5.4654 -2.0055 9 6 3.8103 6.4395 -2.9445 10 1 3.7339 6.2235 -3.9999 11 6 4.2564 7.6965 -2.5175 12 7 4.3493 7.9582 -1.2382 13 14 4.7201 8.9993 -3.7734 14 1 4.5281 8.4573 -5.1425 15 1 3.8576 10.1939 -3.5888 16 1 6.1427 9.3822 -3.5871 17 6 3.0160 4.2010 -2.3129 18 8 2.8625 3.7698 -3.5898 19 6 3.9891 3.1379 -4.2009 20 6 2.7291 3.3925 -1.2012 21 6 2.2565 2.0564 -1.1813 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3635 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8901 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 2.0800 1.5540 2.1380 28 1 2.8983 3.8663 2.1599 29 1 4.6586 8.8287 -0.9424 30 1 4.8272 3.8343 -4.2256 31 1 4.2672 2.2551 -3.6251 32 1 3.7322 2.8417 -5.2179 33 1 2.0734 1.5388 -2.1114 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396303624.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:57 Heat of formation + Delta-G solvation = -48.157315 kcal Electronic energy + Delta-G solvation = -17072.344063 eV Core-core repulsion = 14380.520770 eV Total energy + Delta-G solvation = -2691.823293 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.41421 -38.71898 -36.33806 -35.37762 -33.26319 -31.13143 -30.05368 -28.10781 -26.68567 -24.71787 -23.40487 -22.38417 -20.49333 -19.82975 -17.93376 -17.59772 -16.88514 -16.14841 -16.04656 -15.90125 -15.17150 -15.06944 -14.45554 -14.32003 -14.13849 -14.05735 -13.64411 -13.31679 -13.18945 -12.96176 -12.68900 -12.30701 -12.10074 -12.04394 -11.88278 -11.76362 -11.58258 -11.02339 -10.88581 -10.37885 -10.04027 -9.21928 -8.96641 -8.16529 -6.53892 0.30514 0.68727 1.23385 1.32566 1.36744 1.52590 1.71144 1.85131 2.11243 2.79970 3.08354 3.72330 4.01817 4.09620 4.36908 4.49873 4.53888 4.60126 4.68871 4.75376 4.76793 4.79204 4.86341 4.94875 5.08063 5.16218 5.26182 5.42411 5.48367 5.49701 5.72667 5.77294 5.92618 6.06982 6.12584 6.43210 6.53095 7.23307 7.89156 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.030738 B = 0.006327 C = 0.005434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.718905 B = 4424.221817 C = 5151.421104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.076 4.076 3 C -0.069 4.069 4 C -0.176 4.176 5 C -0.064 4.064 6 C -0.286 4.286 7 S 0.142 5.858 8 C 0.004 3.996 9 C -0.391 4.391 10 H 0.096 0.904 11 C 0.017 3.983 12 N -0.792 5.792 13 Si 1.012 2.988 14 H -0.257 1.257 15 H -0.255 1.255 16 H -0.254 1.254 17 C -0.199 4.199 18 O -0.320 6.320 19 C 0.025 3.975 20 C -0.021 4.021 21 C -0.156 4.156 22 H 0.038 0.962 23 H 0.078 0.922 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.143 0.857 28 H 0.125 0.875 29 H 0.315 0.685 30 H 0.024 0.976 31 H 0.025 0.975 32 H 0.101 0.899 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.603 -4.894 1.527 5.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.113 4.113 3 C -0.071 4.071 4 C -0.196 4.196 5 C -0.086 4.086 6 C -0.400 4.400 7 S 0.401 5.599 8 C -0.116 4.116 9 C -0.424 4.424 10 H 0.114 0.886 11 C -0.203 4.203 12 N -0.418 5.418 13 Si 0.830 3.170 14 H -0.180 1.180 15 H -0.179 1.179 16 H -0.178 1.178 17 C -0.249 4.249 18 O -0.236 6.236 19 C -0.070 4.070 20 C -0.028 4.028 21 C -0.176 4.176 22 H 0.057 0.943 23 H 0.097 0.903 24 H 0.074 0.926 25 H 0.086 0.914 26 H 0.106 0.894 27 H 0.161 0.839 28 H 0.143 0.857 29 H 0.129 0.871 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.119 0.881 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.280 -3.543 2.495 4.342 hybrid contribution 0.133 -0.532 -1.429 1.530 sum -0.147 -4.075 1.066 4.215 Atomic orbital electron populations 1.21702 0.94208 1.02362 1.01488 1.20531 0.96614 0.91005 1.03145 1.19539 0.98188 0.97090 0.92304 1.20852 1.06325 0.94610 0.97806 1.20551 0.98338 0.94852 0.94861 1.23634 1.15285 1.04112 0.96951 1.84437 1.69941 1.05526 0.99983 1.22018 0.96096 0.96238 0.97215 1.19500 1.32207 0.95470 0.95224 0.88602 1.27312 0.92458 1.01671 0.98824 1.68706 1.30543 1.25584 1.16956 0.84659 0.79294 0.75700 0.77342 1.17993 1.17936 1.17810 1.17376 1.30029 0.93893 0.83623 1.85995 1.35835 1.76836 1.24946 1.23002 0.90467 0.95546 0.98012 1.18335 0.97530 0.94614 0.92370 1.20458 1.05937 0.93453 0.97728 0.94260 0.90312 0.92647 0.91389 0.89426 0.83912 0.85720 0.87141 0.95721 0.95663 0.88062 0.88165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 9.89 71.98 0.71 -2.70 16 2 C -0.08 -2.06 6.04 29.84 0.18 -1.88 16 3 C -0.07 -2.57 5.08 -20.23 -0.10 -2.67 16 4 C -0.18 -6.37 9.68 22.30 0.22 -6.15 16 5 C -0.06 -2.65 10.07 22.48 0.23 -2.42 16 6 C -0.29 -14.11 6.46 23.06 0.15 -13.96 16 7 S 0.14 7.23 20.10 -56.49 -1.14 6.09 16 8 C 0.00 0.23 6.12 22.47 0.14 0.37 16 9 C -0.39 -20.34 9.08 23.05 0.21 -20.13 16 10 H 0.10 4.94 7.71 -2.91 -0.02 4.91 16 11 C 0.02 0.77 5.50 85.27 0.47 1.24 16 12 N -0.79 -36.91 10.58 21.86 0.23 -36.67 16 13 Si 1.01 34.27 29.56 68.60 2.03 36.30 16 14 H -0.26 -8.69 7.11 99.48 0.71 -7.99 16 15 H -0.26 -8.16 7.11 99.48 0.71 -7.46 16 16 H -0.25 -8.04 7.11 99.48 0.71 -7.33 16 17 C -0.20 -10.92 5.87 22.66 0.13 -10.79 16 18 O -0.32 -16.53 10.07 -89.57 -0.90 -17.43 16 19 C 0.03 1.05 11.13 113.37 1.26 2.31 16 20 C -0.02 -1.08 5.86 -21.43 -0.13 -1.21 16 21 C -0.16 -7.00 9.57 22.62 0.22 -6.78 16 22 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 25 H 0.07 1.79 8.07 -2.38 -0.02 1.77 16 26 H 0.09 1.98 8.08 -2.39 -0.02 1.96 16 27 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 28 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 29 H 0.31 12.76 8.30 -92.70 -0.77 11.99 16 30 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 33 H 0.10 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -61.56 297.17 5.01 -56.56 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 1.10 Total: 19.94 kcal Atomic # 6 Polarization: -68.47 SS G_CDS: 3.68 Total: -64.78 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.23 Total: -36.67 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.90 Total: -17.43 kcal Atomic # 14 Polarization: 34.27 SS G_CDS: 2.03 Total: 36.30 kcal Atomic # 16 Polarization: 7.23 SS G_CDS: -1.14 Total: 6.09 kcal Total: -61.56 5.01 -56.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396303624.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.400 kcal (2) G-P(sol) polarization free energy of solvation -61.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds